RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 R3HCC1Q9Y3T6 440 aaKnown RBP18.37■□□□□ 0.53
VPS9D1-201ENST00000389386 TMEM132EQ6IEE7 984 aa18.37■□□□□ 0.53
VPS9D1-201ENST00000389386 RWDD1Q9H446 243 aaPredicted RBP18.37■□□□□ 0.53
VPS9D1-201ENST00000389386 PTMSP20962 102 aa18.36■□□□□ 0.53
VPS9D1-201ENST00000389386 SMC5Q8IY18 1101 aa18.36■□□□□ 0.53
VPS9D1-201ENST00000389386 IQGAP1P46940 1657 aa18.36■□□□□ 0.53
VPS9D1-201ENST00000389386 CAMSAP1Q5T5Y3 1602 aa18.36■□□□□ 0.53
VPS9D1-201ENST00000389386 NOS1P29475 1434 aa18.36■□□□□ 0.53
VPS9D1-201ENST00000389386 RAB3GAP1Q15042 981 aa18.36■□□□□ 0.53
VPS9D1-201ENST00000389386 MROH2AA6NES4 1674 aa18.36■□□□□ 0.53
VPS9D1-201ENST00000389386 TRAK1Q9UPV9 953 aa18.36■□□□□ 0.53
VPS9D1-201ENST00000389386 ARHGEF40Q8TER5 1519 aa18.35■□□□□ 0.53
VPS9D1-201ENST00000389386 RLBP1P12271 317 aa18.35■□□□□ 0.53
VPS9D1-201ENST00000389386 NGEFQ8N5V2 710 aa18.35■□□□□ 0.53
VPS9D1-201ENST00000389386 SNX21Q969T3 373 aa18.35■□□□□ 0.53
VPS9D1-201ENST00000389386 KIF1BO60333 1816 aa18.34■□□□□ 0.53
VPS9D1-201ENST00000389386 ANP32BQ92688 251 aaKnown RBP18.34■□□□□ 0.53
VPS9D1-201ENST00000389386 MTERF4Q7Z6M4 381 aaKnown RBP18.34■□□□□ 0.53
VPS9D1-201ENST00000389386 IDI1Q13907 227 aa18.33■□□□□ 0.53
VPS9D1-201ENST00000389386 HS1BP3Q53T59 392 aa18.33■□□□□ 0.53
VPS9D1-201ENST00000389386 ESF1Q9H501 851 aaKnown RBP18.33■□□□□ 0.53
VPS9D1-201ENST00000389386 ZNF500O60304 480 aaPredicted RBP18.32■□□□□ 0.52
VPS9D1-201ENST00000389386 RARSP54136 660 aaKnown RBP18.32■□□□□ 0.52
VPS9D1-201ENST00000389386 TNNQ9UQP3 1299 aa18.32■□□□□ 0.52
VPS9D1-201ENST00000389386 UQCRHLA0A096LP55 91 aa18.31■□□□□ 0.52
VPS9D1-201ENST00000389386 UQCRHP07919 91 aa18.31■□□□□ 0.52
VPS9D1-201ENST00000389386 IBTKQ9P2D0 1353 aaPredicted RBP18.31■□□□□ 0.52
VPS9D1-201ENST00000389386 STAC3Q96MF2 364 aa18.3■□□□□ 0.52
VPS9D1-201ENST00000389386 NOL7Q9UMY1 257 aaKnown RBP18.3■□□□□ 0.52
VPS9D1-201ENST00000389386 DYNC1I1O14576 645 aa18.29■□□□□ 0.52
VPS9D1-201ENST00000389386 RBM25P49756 843 aaKnown RBP18.29■□□□□ 0.52
VPS9D1-201ENST00000389386 CLTCQ00610 1675 aaKnown RBP18.29■□□□□ 0.52
VPS9D1-201ENST00000389386 CDCA8Q53HL2 280 aa18.29■□□□□ 0.52
VPS9D1-201ENST00000389386 WWC1Q8IX03 1113 aa18.29■□□□□ 0.52
VPS9D1-201ENST00000389386 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.29■□□□□ 0.52
VPS9D1-201ENST00000389386 ASXL1Q8IXJ9 1541 aa18.28■□□□□ 0.52
VPS9D1-201ENST00000389386 AGLP35573 1532 aa18.28■□□□□ 0.52
VPS9D1-201ENST00000389386 UTP14CQ5TAP6 766 aaKnown RBP18.28■□□□□ 0.52
VPS9D1-201ENST00000389386 SYNMO15061 1565 aa18.27■□□□□ 0.52
VPS9D1-201ENST00000389386 SAFB2Q14151 953 aaKnown RBP eCLIP18.27■□□□□ 0.52
VPS9D1-201ENST00000389386 ZHX1Q9UKY1 873 aaPredicted RBP18.27■□□□□ 0.52
VPS9D1-201ENST00000389386 HSP90AB1P08238 724 aaKnown RBP18.27■□□□□ 0.51
VPS9D1-201ENST00000389386 CEBPAP49715 358 aaPredicted RBP18.27■□□□□ 0.51
VPS9D1-201ENST00000389386 XPCQ01831 940 aaPredicted RBP18.27■□□□□ 0.51
VPS9D1-201ENST00000389386 NPC1L1Q9UHC9 1359 aa18.27■□□□□ 0.51
VPS9D1-201ENST00000389386 REREQ9P2R6 1566 aa18.26■□□□□ 0.51
VPS9D1-201ENST00000389386 KLHL40Q2TBA0 621 aa18.26■□□□□ 0.51
VPS9D1-201ENST00000389386 CARD14Q9BXL6 1004 aa18.26■□□□□ 0.51
VPS9D1-201ENST00000389386 DMTNQ08495 405 aa18.25■□□□□ 0.51
VPS9D1-201ENST00000389386 PRDM10Q9NQV6 1147 aa18.25■□□□□ 0.51
VPS9D1-201ENST00000389386 MYOM2P54296 1465 aa18.25■□□□□ 0.51
VPS9D1-201ENST00000389386 CLEC17AQ6ZS10 378 aa18.25■□□□□ 0.51
VPS9D1-201ENST00000389386 PDLIM2Q96JY6 352 aa18.25■□□□□ 0.51
VPS9D1-201ENST00000389386 STAG3Q9UJ98 1225 aa18.25■□□□□ 0.51
VPS9D1-201ENST00000389386 ZC3H13Q5T200 1668 aaKnown RBP18.25■□□□□ 0.51
VPS9D1-201ENST00000389386 ERVK-7P63135 1459 aa18.24■□□□□ 0.51
VPS9D1-201ENST00000389386 ARHGAP31Q2M1Z3 1444 aa18.24■□□□□ 0.51
VPS9D1-201ENST00000389386 TNNT2P45379 298 aaPredicted RBP18.24■□□□□ 0.51
VPS9D1-201ENST00000389386 ZNF445P59923 1031 aa18.24■□□□□ 0.51
VPS9D1-201ENST00000389386 ARID3AQ99856 593 aa18.23■□□□□ 0.51
VPS9D1-201ENST00000389386 ADGRB3O60242 1522 aa18.23■□□□□ 0.51
VPS9D1-201ENST00000389386 CSPP1Q1MSJ5 1256 aa18.23■□□□□ 0.51
VPS9D1-201ENST00000389386 DDX49Q9Y6V7 483 aaKnown RBP18.23■□□□□ 0.51
VPS9D1-201ENST00000389386 IFT172Q9UG01 1749 aa18.23■□□□□ 0.51
VPS9D1-201ENST00000389386 MYOM1P52179 1685 aa18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 SLC12A5Q9H2X9 1139 aa18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 PREX1Q8TCU6 1659 aa18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 GOLGA6L22H0YM25 854 aa18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 CCDC94Q9BW85 323 aaPredicted RBP18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 ZSCAN20P17040 1043 aaPredicted RBP18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 SSFA2P28290 1259 aa18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 MVPQ14764 893 aaKnown RBP18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 C14orf93Q9H972 538 aaKnown RBP18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 STK26Q9P289 416 aa18.22■□□□□ 0.51
VPS9D1-201ENST00000389386 SLC52A1Q9NWF4 448 aa18.21■□□□□ 0.51
VPS9D1-201ENST00000389386 ZKSCAN5Q9Y2L8 839 aa18.21■□□□□ 0.51
VPS9D1-201ENST00000389386 SASS6Q6UVJ0 657 aa18.21■□□□□ 0.5
VPS9D1-201ENST00000389386 BCL2L13Q9BXK5 485 aa18.21■□□□□ 0.5
VPS9D1-201ENST00000389386 KIAA1210Q9ULL0 1709 aa18.2■□□□□ 0.5
VPS9D1-201ENST00000389386 PPP6R1Q9UPN7 881 aa18.2■□□□□ 0.5
VPS9D1-201ENST00000389386 MCM5P33992 734 aa18.2■□□□□ 0.5
VPS9D1-201ENST00000389386 KIF2CQ99661 725 aa18.2■□□□□ 0.5
VPS9D1-201ENST00000389386 KDM5AP29375 1690 aaKnown RBP18.2■□□□□ 0.5
VPS9D1-201ENST00000389386 BAG4O95429 457 aaKnown RBP18.19■□□□□ 0.5
VPS9D1-201ENST00000389386 FOXD4L1Q9NU39 408 aa18.19■□□□□ 0.5
VPS9D1-201ENST00000389386 MYO5BQ9ULV0 1848 aa18.19■□□□□ 0.5
VPS9D1-201ENST00000389386 HDAC1Q13547 482 aaPredicted RBP18.19■□□□□ 0.5
VPS9D1-201ENST00000389386 RBSNQ9H1K0 784 aa18.19■□□□□ 0.5
VPS9D1-201ENST00000389386 CD2BP2O95400 341 aaKnown RBP18.18■□□□□ 0.5
VPS9D1-201ENST00000389386 AEBP2Q6ZN18 517 aaPredicted RBP18.18■□□□□ 0.5
VPS9D1-201ENST00000389386 NRXN1Q9ULB1 1477 aa18.18■□□□□ 0.5
VPS9D1-201ENST00000389386 PPLO60437 1756 aa18.17■□□□□ 0.5
VPS9D1-201ENST00000389386 ZSCAN23Q3MJ62 389 aa18.16■□□□□ 0.5
VPS9D1-201ENST00000389386 PIK3C2BO00750 1634 aa18.16■□□□□ 0.5
VPS9D1-201ENST00000389386 K7ELQ4 463 aaPredicted RBP18.16■□□□□ 0.5
VPS9D1-201ENST00000389386 NEURL4Q96JN8 1562 aa18.16■□□□□ 0.5
VPS9D1-201ENST00000389386 BBXQ8WY36 941 aaPredicted RBP18.15■□□□□ 0.5
VPS9D1-201ENST00000389386 PHF23Q9BUL5 403 aaPredicted RBP18.15■□□□□ 0.5
VPS9D1-201ENST00000389386 GAS2L2Q8NHY3 880 aa18.14■□□□□ 0.5
VPS9D1-201ENST00000389386 NEUROD2Q15784 382 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms