RNA–Protein interactions for RNA: ENST00000375663.7

VARS-215, Transcript of valyl-tRNA synthetase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-215ENST00000375663 PRAG1Q86YV5 1406 aa20.38■□□□□ 0.85
VARS-215ENST00000375663 ERC2O15083 957 aa20.37■□□□□ 0.85
VARS-215ENST00000375663 THUMPD2Q9BTF0 503 aaKnown RBP20.37■□□□□ 0.85
VARS-215ENST00000375663 PLEKHH1Q9ULM0 1364 aa20.37■□□□□ 0.85
VARS-215ENST00000375663 SLC4A2P04920 1241 aa20.36■□□□□ 0.85
VARS-215ENST00000375663 NUP153P49790 1475 aaKnown RBP20.36■□□□□ 0.85
VARS-215ENST00000375663 BICD2Q8TD16 824 aa20.36■□□□□ 0.85
VARS-215ENST00000375663 RPGRIP1LQ68CZ1 1315 aa20.36■□□□□ 0.85
VARS-215ENST00000375663 CCDC9Q9Y3X0 531 aaKnown RBP20.36■□□□□ 0.85
VARS-215ENST00000375663 SULT6B1Q6IMI4 303 aa20.35■□□□□ 0.85
VARS-215ENST00000375663 MAP7D2Q96T17 732 aa20.35■□□□□ 0.85
VARS-215ENST00000375663 HSP90AB4PQ58FF6 505 aa20.35■□□□□ 0.85
VARS-215ENST00000375663 CTTNBP2Q8WZ74 1663 aa20.35■□□□□ 0.85
VARS-215ENST00000375663 SURF6O75683 361 aaKnown RBP20.35■□□□□ 0.85
VARS-215ENST00000375663 PRKCSHP14314 528 aaPredicted RBP20.34■□□□□ 0.85
VARS-215ENST00000375663 TSPY26PQ9H489 355 aa20.34■□□□□ 0.85
VARS-215ENST00000375663 TEX14Q8IWB6 1497 aa20.34■□□□□ 0.85
VARS-215ENST00000375663 NFE2L2Q16236 605 aa20.34■□□□□ 0.85
VARS-215ENST00000375663 ZNF608Q9ULD9 1512 aaPredicted RBP20.34■□□□□ 0.85
VARS-215ENST00000375663 ZNF592Q92610 1267 aa20.34■□□□□ 0.85
VARS-215ENST00000375663 ATAD2Q6PL18 1390 aa20.33■□□□□ 0.85
VARS-215ENST00000375663 GNAI2P04899 355 aa20.33■□□□□ 0.85
VARS-215ENST00000375663 RBM10P98175 930 aaKnown RBP20.33■□□□□ 0.85
VARS-215ENST00000375663 RNF20Q5VTR2 975 aa20.33■□□□□ 0.85
VARS-215ENST00000375663 TNPO1Q92973 898 aaKnown RBP20.33■□□□□ 0.85
VARS-215ENST00000375663 CYB5RLQ6IPT4 315 aa20.33■□□□□ 0.84
VARS-215ENST00000375663 C1orf141Q5JVX7 400 aa20.32■□□□□ 0.84
VARS-215ENST00000375663 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.32■□□□□ 0.84
VARS-215ENST00000375663 SLC52A1Q9NWF4 448 aa20.32■□□□□ 0.84
VARS-215ENST00000375663 CCDC27Q2M243 656 aa20.32■□□□□ 0.84
VARS-215ENST00000375663 PZPP20742 1482 aa20.32■□□□□ 0.84
VARS-215ENST00000375663 ALDH1L2Q3SY69 923 aa20.31■□□□□ 0.84
VARS-215ENST00000375663 ABCC11Q96J66 1382 aa20.31■□□□□ 0.84
VARS-215ENST00000375663 G3BP1Q13283 466 aaKnown RBP eCLIP20.31■□□□□ 0.847e-7■■■■□ 21.3
VARS-215ENST00000375663 NEXNQ0ZGT2 675 aa20.31■□□□□ 0.84
VARS-215ENST00000375663 TAF7LQ5H9L4 462 aa20.31■□□□□ 0.84
VARS-215ENST00000375663 RPAP2Q8IXW5 612 aaPredicted RBP20.31■□□□□ 0.84
VARS-215ENST00000375663 ZSCAN30Q86W11 494 aa20.3■□□□□ 0.84
VARS-215ENST00000375663 FIBPO43427 364 aa20.3■□□□□ 0.84
VARS-215ENST00000375663 CCDC30Q5VVM6 783 aa20.3■□□□□ 0.84
VARS-215ENST00000375663 MTERF4Q7Z6M4 381 aaKnown RBP20.3■□□□□ 0.84
VARS-215ENST00000375663 CNTROBQ8N137 903 aa20.29■□□□□ 0.84
VARS-215ENST00000375663 MPNDQ8N594 471 aa20.29■□□□□ 0.84
VARS-215ENST00000375663 RRP9O43818 475 aaKnown RBP20.28■□□□□ 0.84
VARS-215ENST00000375663 SSFA2P28290 1259 aa20.28■□□□□ 0.84
VARS-215ENST00000375663 CLASRPQ8N2M8 674 aaKnown RBP20.28■□□□□ 0.84
VARS-215ENST00000375663 SASS6Q6UVJ0 657 aa20.28■□□□□ 0.84
VARS-215ENST00000375663 LRRCC1Q9C099 1032 aa20.28■□□□□ 0.84
VARS-215ENST00000375663 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.27■□□□□ 0.84
VARS-215ENST00000375663 CCT4P50991 539 aaKnown RBP20.27■□□□□ 0.84
VARS-215ENST00000375663 IFT57Q9NWB7 429 aa20.27■□□□□ 0.84
VARS-215ENST00000375663 RAPGEF6Q8TEU7 1601 aa20.27■□□□□ 0.84
VARS-215ENST00000375663 ASXL1Q8IXJ9 1541 aa20.27■□□□□ 0.84
VARS-215ENST00000375663 NPHP1O15259 732 aa20.27■□□□□ 0.84
VARS-215ENST00000375663 SEC24BO95487 1268 aa20.27■□□□□ 0.84
VARS-215ENST00000375663 RRS1Q15050 365 aaKnown RBP20.27■□□□□ 0.84
VARS-215ENST00000375663 SPATA31E1Q6ZUB1 1445 aa20.27■□□□□ 0.83
VARS-215ENST00000375663 BMP2KLQ5H9B9 411 aa20.26■□□□□ 0.83
VARS-215ENST00000375663 TXNDC2Q86VQ3 553 aa20.26■□□□□ 0.83
VARS-215ENST00000375663 GAS2L2Q8NHY3 880 aa20.26■□□□□ 0.83
VARS-215ENST00000375663 SPINK5Q9NQ38 1064 aaPredicted RBP20.26■□□□□ 0.83
VARS-215ENST00000375663 CCDC34Q96HJ3 373 aa20.26■□□□□ 0.83
VARS-215ENST00000375663 TNNQ9UQP3 1299 aa20.26■□□□□ 0.83
VARS-215ENST00000375663 ARHGEF12Q9NZN5 1544 aa20.25■□□□□ 0.83
VARS-215ENST00000375663 CHMP4CQ96CF2 233 aa20.25■□□□□ 0.83
VARS-215ENST00000375663 WDR33Q9C0J8 1336 aaKnown RBP20.25■□□□□ 0.83
VARS-215ENST00000375663 XRCC6P12956 609 aaKnown RBP eCLIP20.25■□□□□ 0.838e-6■■□□□ 12.6
VARS-215ENST00000375663 LETM1O95202 739 aaPredicted RBP20.25■□□□□ 0.83
VARS-215ENST00000375663 DDX58O95786 925 aaKnown RBP20.25■□□□□ 0.83
VARS-215ENST00000375663 RLBP1P12271 317 aa20.25■□□□□ 0.83
VARS-215ENST00000375663 NLRP6P59044 892 aa20.25■□□□□ 0.83
VARS-215ENST00000375663 OSCARQ8IYS5 282 aa20.25■□□□□ 0.83
VARS-215ENST00000375663 UHRF1BP1Q6BDS2 1440 aa20.24■□□□□ 0.83
VARS-215ENST00000375663 HDAC1Q13547 482 aaPredicted RBP20.24■□□□□ 0.83
VARS-215ENST00000375663 NUP160Q12769 1436 aa20.24■□□□□ 0.83
VARS-215ENST00000375663 HMGN5P82970 282 aaKnown RBP20.23■□□□□ 0.83
VARS-215ENST00000375663 TBC1D9Q6ZT07 1266 aa20.23■□□□□ 0.83
VARS-215ENST00000375663 KDM2BQ8NHM5 1336 aa20.23■□□□□ 0.83
VARS-215ENST00000375663 NUTM2GQ5VZR2 741 aa20.23■□□□□ 0.83
VARS-215ENST00000375663 WDR62O43379 1518 aa20.23■□□□□ 0.83
VARS-215ENST00000375663 DCTN1Q14203 1278 aa20.23■□□□□ 0.83
VARS-215ENST00000375663 ATP10BO94823 1461 aa20.23■□□□□ 0.83
VARS-215ENST00000375663 SYCE3A1L190 88 aa20.22■□□□□ 0.83
VARS-215ENST00000375663 RAPGEF3O95398 923 aa20.22■□□□□ 0.83
VARS-215ENST00000375663 PANK2Q9BZ23 570 aa20.22■□□□□ 0.83
VARS-215ENST00000375663 EXOC6BQ9Y2D4 811 aa20.22■□□□□ 0.83
VARS-215ENST00000375663 FAM135AQ9P2D6 1515 aa20.22■□□□□ 0.83
VARS-215ENST00000375663 RTEL1-TNFRSF6BF6WH68 1400 aa20.21■□□□□ 0.83
VARS-215ENST00000375663 SMARCA5O60264 1052 aaPredicted RBP20.21■□□□□ 0.83
VARS-215ENST00000375663 ZNF771Q7L3S4 317 aaPredicted RBP20.21■□□□□ 0.83
VARS-215ENST00000375663 CCDC73Q6ZRK6 1079 aa20.21■□□□□ 0.83
VARS-215ENST00000375663 ZNF692Q9BU19 519 aaPredicted RBP20.21■□□□□ 0.83
VARS-215ENST00000375663 HDGFL1Q5TGJ6 251 aa20.2■□□□□ 0.82
VARS-215ENST00000375663 TRIM5Q9C035 493 aa20.2■□□□□ 0.82
VARS-215ENST00000375663 TOMM22Q9NS69 142 aa20.2■□□□□ 0.82
VARS-215ENST00000375663 TPM3P06753 285 aa20.2■□□□□ 0.82
VARS-215ENST00000375663 PDCP20941 246 aa20.2■□□□□ 0.82
VARS-215ENST00000375663 PSMA5P28066 241 aa20.2■□□□□ 0.82
VARS-215ENST00000375663 ITSN2Q9NZM3 1697 aa20.2■□□□□ 0.82
VARS-215ENST00000375663 TULP1O00294 542 aaPredicted RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms