RNA–Protein interactions for RNA: ENST00000372276.7

CD40-201, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,623 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-201ENST00000372276 PMFBP1Q8TBY8 1022 aa23.28■■□□□ 1.32
CD40-201ENST00000372276 CLUAP1Q96AJ1 413 aa23.28■■□□□ 1.32
CD40-201ENST00000372276 FAM135BQ49AJ0 1406 aa23.27■■□□□ 1.32
CD40-201ENST00000372276 GGNBP2Q9H3C7 697 aa23.27■■□□□ 1.32
CD40-201ENST00000372276 DIAPH1O60610 1272 aaKnown RBP23.26■■□□□ 1.31
CD40-201ENST00000372276 PLEKHF1Q96S99 279 aa23.26■■□□□ 1.31
CD40-201ENST00000372276 CDC42BPGQ6DT37 1551 aa23.26■■□□□ 1.31
CD40-201ENST00000372276 RRP7AQ9Y3A4 280 aaKnown RBP23.26■■□□□ 1.31
CD40-201ENST00000372276 KNDC1Q76NI1 1749 aa23.26■■□□□ 1.31
CD40-201ENST00000372276 AEBP2Q6ZN18 517 aaPredicted RBP23.25■■□□□ 1.31
CD40-201ENST00000372276 CABP1Q9NZU7 370 aa23.25■■□□□ 1.31
CD40-201ENST00000372276 ZMYM3Q14202 1370 aa23.25■■□□□ 1.31
CD40-201ENST00000372276 FER1L4A9Z1Z3 1794 aa23.24■■□□□ 1.31
CD40-201ENST00000372276 FCHSD2O94868 740 aa23.24■■□□□ 1.31
CD40-201ENST00000372276 NEFMP07197 916 aa23.24■■□□□ 1.31
CD40-201ENST00000372276 TECPR2O15040 1411 aa23.24■■□□□ 1.31
CD40-201ENST00000372276 TMPOP42166 694 aaKnown RBP23.23■■□□□ 1.31
CD40-201ENST00000372276 RIMS1Q86UR5 1692 aaKnown RBP23.23■■□□□ 1.31
CD40-201ENST00000372276 U2SURPO15042 1029 aaKnown RBP23.22■■□□□ 1.31
CD40-201ENST00000372276 EDC4Q6P2E9 1401 aaKnown RBP23.22■■□□□ 1.31
CD40-201ENST00000372276 WASLO00401 505 aaPredicted RBP23.2■■□□□ 1.3
CD40-201ENST00000372276 PAK3O75914 559 aaPredicted RBP23.19■■□□□ 1.3
CD40-201ENST00000372276 ZNF428Q96B54 188 aa23.19■■□□□ 1.3
CD40-201ENST00000372276 NRXN3Q9Y4C0 1643 aa23.19■■□□□ 1.3
CD40-201ENST00000372276 CPSF1Q10570 1443 aaKnown RBP23.19■■□□□ 1.3
CD40-201ENST00000372276 CALD1Q05682 793 aaKnown RBP23.19■■□□□ 1.3
CD40-201ENST00000372276 ZKSCAN2Q63HK3 967 aa23.19■■□□□ 1.3
CD40-201ENST00000372276 FRAT1Q92837 279 aaPredicted RBP23.19■■□□□ 1.3
CD40-201ENST00000372276 TNRQ92752 1358 aa23.18■■□□□ 1.3
CD40-201ENST00000372276 NPM2Q86SE8 214 aaKnown RBP23.18■■□□□ 1.3
CD40-201ENST00000372276 AATKQ6ZMQ8 1374 aa23.17■■□□□ 1.3
CD40-201ENST00000372276 COG6Q9Y2V7 657 aa23.17■■□□□ 1.3
CD40-201ENST00000372276 CPS1P31327 1500 aa23.16■■□□□ 1.3
CD40-201ENST00000372276 ZNF692Q9BU19 519 aaPredicted RBP23.16■■□□□ 1.3
CD40-201ENST00000372276 RWDD1Q9H446 243 aaPredicted RBP23.16■■□□□ 1.3
CD40-201ENST00000372276 PANK1Q8TE04 598 aa23.15■■□□□ 1.3
CD40-201ENST00000372276 WAPLQ7Z5K2 1190 aa23.15■■□□□ 1.3
CD40-201ENST00000372276 TRIM35Q9UPQ4 493 aa23.15■■□□□ 1.3
CD40-201ENST00000372276 PPM1GO15355 546 aaPredicted RBP23.14■■□□□ 1.29
CD40-201ENST00000372276 PPIP5K1Q6PFW1 1433 aa23.13■■□□□ 1.29
CD40-201ENST00000372276 RIPK4P57078 832 aa23.13■■□□□ 1.29
CD40-201ENST00000372276 CCDC61Q9Y6R9 512 aa23.13■■□□□ 1.29
CD40-201ENST00000372276 IPO8O15397 1037 aaKnown RBP23.12■■□□□ 1.29
CD40-201ENST00000372276 MVPQ14764 893 aaKnown RBP23.12■■□□□ 1.29
CD40-201ENST00000372276 C8orf34Q49A92 452 aa23.12■■□□□ 1.29
CD40-201ENST00000372276 IGHDP01880 384 aa23.11■■□□□ 1.29
CD40-201ENST00000372276 DZIP1LQ8IYY4 767 aaKnown RBP23.11■■□□□ 1.29
CD40-201ENST00000372276 USP35Q9P2H5 1018 aa23.11■■□□□ 1.29
CD40-201ENST00000372276 POLKQ9UBT6 870 aa23.11■■□□□ 1.29
CD40-201ENST00000372276 TMEM2Q9UHN6 1383 aa23.11■■□□□ 1.29
CD40-201ENST00000372276 CDK12Q9NYV4 1490 aaPredicted RBP23.11■■□□□ 1.29
CD40-201ENST00000372276 ALDH1L2Q3SY69 923 aa23.11■■□□□ 1.29
CD40-201ENST00000372276 RTL5Q5HYW3 569 aaPredicted RBP23.11■■□□□ 1.29
CD40-201ENST00000372276 FTSJ3Q8IY81 847 aaKnown RBP23.11■■□□□ 1.29
CD40-201ENST00000372276 METP08581 1390 aa23.1■■□□□ 1.29
CD40-201ENST00000372276 DAXXQ9UER7 740 aaPredicted RBP23.1■■□□□ 1.29
CD40-201ENST00000372276 KIF16BQ96L93 1317 aa23.1■■□□□ 1.29
CD40-201ENST00000372276 VIRMAQ69YN4 1812 aaKnown RBP23.09■■□□□ 1.29
CD40-201ENST00000372276 MON2Q7Z3U7 1717 aa23.09■■□□□ 1.29
CD40-201ENST00000372276 CEBPAP49715 358 aaPredicted RBP23.09■■□□□ 1.29
CD40-201ENST00000372276 NUDT16Q96DE0 195 aaKnown RBP23.09■■□□□ 1.29
CD40-201ENST00000372276 MAP2P11137 1827 aaKnown RBP23.09■■□□□ 1.29
CD40-201ENST00000372276 C3P01024 1663 aa23.08■■□□□ 1.29
CD40-201ENST00000372276 RGS3P49796 1198 aa23.08■■□□□ 1.29
CD40-201ENST00000372276 CHMP4BQ9H444 224 aaKnown RBP23.08■■□□□ 1.29
CD40-201ENST00000372276 DDX19BQ9UMR2 479 aa23.08■■□□□ 1.29
CD40-201ENST00000372276 UBR1Q8IWV7 1749 aa23.08■■□□□ 1.29
CD40-201ENST00000372276 BRPF1P55201 1214 aaPredicted RBP23.08■■□□□ 1.28
CD40-201ENST00000372276 EXOSC9Q06265 439 aaKnown RBP23.08■■□□□ 1.28
CD40-201ENST00000372276 LMOD3Q0VAK6 560 aa23.08■■□□□ 1.28
CD40-201ENST00000372276 RSPH6AQ9H0K4 717 aa23.08■■□□□ 1.28
CD40-201ENST00000372276 SMC4Q9NTJ3 1288 aa23.08■■□□□ 1.28
CD40-201ENST00000372276 AKAP12Q02952 1782 aa23.07■■□□□ 1.28
CD40-201ENST00000372276 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.07■■□□□ 1.28
CD40-201ENST00000372276 COG3Q96JB2 828 aa23.07■■□□□ 1.28
CD40-201ENST00000372276 SENP3Q9H4L4 574 aaPredicted RBP23.06■■□□□ 1.28
CD40-201ENST00000372276 ITSN1Q15811 1721 aa23.06■■□□□ 1.28
CD40-201ENST00000372276 PLEKHG1Q9ULL1 1385 aa23.06■■□□□ 1.28
CD40-201ENST00000372276 NFE2L2Q16236 605 aa23.05■■□□□ 1.28
CD40-201ENST00000372276 PLPPR3Q6T4P5 718 aa23.05■■□□□ 1.28
CD40-201ENST00000372276 LRRC7Q96NW7 1537 aa23.04■■□□□ 1.28
CD40-201ENST00000372276 ATF7IPQ6VMQ6 1270 aa23.04■■□□□ 1.28
CD40-201ENST00000372276 TXNDC2Q86VQ3 553 aa23.04■■□□□ 1.28
CD40-201ENST00000372276 RLBP1P12271 317 aa23.03■■□□□ 1.28
CD40-201ENST00000372276 PRKAR2BP31323 418 aa23.02■■□□□ 1.28
CD40-201ENST00000372276 SKAP1Q86WV1 359 aa23.02■■□□□ 1.28
CD40-201ENST00000372276 TSR2Q969E8 191 aaKnown RBP23.02■■□□□ 1.28
CD40-201ENST00000372276 IL13P35225 146 aa23.01■■□□□ 1.27
CD40-201ENST00000372276 GNAI1P63096 354 aa23.01■■□□□ 1.27
CD40-201ENST00000372276 HDAC1Q13547 482 aaPredicted RBP23.01■■□□□ 1.27
CD40-201ENST00000372276 PCDHB15Q9Y5E8 787 aa23.01■■□□□ 1.27
CD40-201ENST00000372276 SSH1Q8WYL5 1049 aa23■■□□□ 1.27
CD40-201ENST00000372276 BCL2L13Q9BXK5 485 aa23■■□□□ 1.27
CD40-201ENST00000372276 IFT57Q9NWB7 429 aa23■■□□□ 1.27
CD40-201ENST00000372276 ARHGAP45Q92619 1136 aa22.99■■□□□ 1.27
CD40-201ENST00000372276 ADAMTS13Q76LX8 1427 aa22.98■■□□□ 1.27
CD40-201ENST00000372276 PLEKHG3A1L390 1219 aa22.98■■□□□ 1.27
CD40-201ENST00000372276 EID1Q9Y6B2 187 aa22.98■■□□□ 1.27
CD40-201ENST00000372276 TRIM27P14373 513 aa22.97■■□□□ 1.27
CD40-201ENST00000372276 HAP1P54257 671 aaPredicted RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms