RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 TRPM2O94759 1503 aa17.18■□□□□ 0.34
SYNE3-201ENST00000334258 VIRMAQ69YN4 1812 aaKnown RBP17.18■□□□□ 0.34
SYNE3-201ENST00000334258 ANP32BQ92688 251 aaKnown RBP17.18■□□□□ 0.34
SYNE3-201ENST00000334258 LNPKQ9C0E8 428 aa17.18■□□□□ 0.34
SYNE3-201ENST00000334258 ISY1Q9ULR0 285 aaKnown RBP17.18■□□□□ 0.34
SYNE3-201ENST00000334258 SPHKAPQ2M3C7 1700 aa17.17■□□□□ 0.34
SYNE3-201ENST00000334258 NEO1Q92859 1461 aa17.17■□□□□ 0.34
SYNE3-201ENST00000334258 GAS2L3Q86XJ1 694 aa17.16■□□□□ 0.34
SYNE3-201ENST00000334258 DDX19BQ9UMR2 479 aa17.16■□□□□ 0.34
SYNE3-201ENST00000334258 EXOSC9Q06265 439 aaKnown RBP17.16■□□□□ 0.34
SYNE3-201ENST00000334258 NSD3Q9BZ95 1437 aa17.16■□□□□ 0.34
SYNE3-201ENST00000334258 TET3O43151 1660 aa17.16■□□□□ 0.34
SYNE3-201ENST00000334258 TRIM27P14373 513 aa17.15■□□□□ 0.34
SYNE3-201ENST00000334258 CABP2Q9NPB3 220 aa17.15■□□□□ 0.34
SYNE3-201ENST00000334258 U2SURPO15042 1029 aaKnown RBP17.15■□□□□ 0.34
SYNE3-201ENST00000334258 EFCAB6Q5THR3 1501 aa17.14■□□□□ 0.33
SYNE3-201ENST00000334258 RNF17Q9BXT8 1623 aaKnown RBP17.14■□□□□ 0.33
SYNE3-201ENST00000334258 SKOR2Q2VWA4 1001 aaPredicted RBP17.14■□□□□ 0.33
SYNE3-201ENST00000334258 ZNF692Q9BU19 519 aaPredicted RBP17.14■□□□□ 0.33
SYNE3-201ENST00000334258 HDAC1Q13547 482 aaPredicted RBP17.13■□□□□ 0.33
SYNE3-201ENST00000334258 MINK1Q8N4C8 1332 aaPredicted RBP17.13■□□□□ 0.33
SYNE3-201ENST00000334258 GOLGA6L22H0YM25 854 aa17.13■□□□□ 0.33
SYNE3-201ENST00000334258 SSH1Q8WYL5 1049 aa17.13■□□□□ 0.33
SYNE3-201ENST00000334258 DEPDC5O75140 1603 aa17.13■□□□□ 0.33
SYNE3-201ENST00000334258 MADDQ8WXG6 1647 aa17.13■□□□□ 0.33
SYNE3-201ENST00000334258 DIP2CQ9Y2E4 1556 aa17.12■□□□□ 0.33
SYNE3-201ENST00000334258 ATF7IPQ6VMQ6 1270 aa17.12■□□□□ 0.33
SYNE3-201ENST00000334258 PHF23Q9BUL5 403 aaPredicted RBP17.12■□□□□ 0.33
SYNE3-201ENST00000334258 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
SYNE3-201ENST00000334258 ERVK-7P63135 1459 aa17.11■□□□□ 0.33
SYNE3-201ENST00000334258 ABCC3O15438 1527 aa17.11■□□□□ 0.33
SYNE3-201ENST00000334258 NCLP19338 710 aaKnown RBP17.11■□□□□ 0.33
SYNE3-201ENST00000334258 CCDC27Q2M243 656 aa17.11■□□□□ 0.33
SYNE3-201ENST00000334258 TMEM57Q8N5G2 664 aa17.11■□□□□ 0.33
SYNE3-201ENST00000334258 NUTM2FA1L443 756 aa17.11■□□□□ 0.33
SYNE3-201ENST00000334258 CIZ1Q9ULV3 898 aaPredicted RBP17.11■□□□□ 0.33
SYNE3-201ENST00000334258 IQGAP1P46940 1657 aa17.1■□□□□ 0.33
SYNE3-201ENST00000334258 NASPP49321 788 aaPredicted RBP17.1■□□□□ 0.33
SYNE3-201ENST00000334258 VWDEQ8N2E2 1590 aa17.1■□□□□ 0.33
SYNE3-201ENST00000334258 DIP2BQ9P265 1576 aa17.1■□□□□ 0.33
SYNE3-201ENST00000334258 VGFO15240 615 aaPredicted RBP17.1■□□□□ 0.33
SYNE3-201ENST00000334258 KIAA1211Q6ZU35 1233 aa17.1■□□□□ 0.33
SYNE3-201ENST00000334258 SMC5Q8IY18 1101 aa17.1■□□□□ 0.33
SYNE3-201ENST00000334258 DDX49Q9Y6V7 483 aaKnown RBP17.1■□□□□ 0.33
SYNE3-201ENST00000334258 SNX21Q969T3 373 aa17.09■□□□□ 0.33
SYNE3-201ENST00000334258 TPM2P07951 284 aa17.09■□□□□ 0.33
SYNE3-201ENST00000334258 RBM25P49756 843 aaKnown RBP17.09■□□□□ 0.33
SYNE3-201ENST00000334258 SRPK2P78362 688 aaKnown RBP17.09■□□□□ 0.33
SYNE3-201ENST00000334258 C14orf93Q9H972 538 aaKnown RBP17.09■□□□□ 0.33
SYNE3-201ENST00000334258 KDM5AP29375 1690 aaKnown RBP17.09■□□□□ 0.33
SYNE3-201ENST00000334258 MSNP26038 577 aaKnown RBP17.09■□□□□ 0.33
SYNE3-201ENST00000334258 ANKRD45Q5TZF3 282 aa17.09■□□□□ 0.33
SYNE3-201ENST00000334258 WAPLQ7Z5K2 1190 aa17.09■□□□□ 0.33
SYNE3-201ENST00000334258 MROH2AA6NES4 1674 aa17.08■□□□□ 0.33
SYNE3-201ENST00000334258 RAB3GAP1Q15042 981 aa17.08■□□□□ 0.33
SYNE3-201ENST00000334258 PTMSP20962 102 aa17.08■□□□□ 0.32
SYNE3-201ENST00000334258 IPO8O15397 1037 aaKnown RBP17.08■□□□□ 0.32
SYNE3-201ENST00000334258 MAP3K4Q9Y6R4 1608 aa17.08■□□□□ 0.32
SYNE3-201ENST00000334258 CHD1LQ86WJ1 897 aa17.07■□□□□ 0.32
SYNE3-201ENST00000334258 SSFA2P28290 1259 aa17.06■□□□□ 0.32
SYNE3-201ENST00000334258 CCDC173Q0VFZ6 552 aa17.06■□□□□ 0.32
SYNE3-201ENST00000334258 PRAM1Q96QH2 718 aa17.06■□□□□ 0.32
SYNE3-201ENST00000334258 CT47B1P0C2W7 299 aaPredicted RBP17.06■□□□□ 0.32
SYNE3-201ENST00000334258 RBM42Q9BTD8 480 aaKnown RBP17.06■□□□□ 0.32
SYNE3-201ENST00000334258 MYOM1P52179 1685 aa17.06■□□□□ 0.32
SYNE3-201ENST00000334258 CFAP74Q9C0B2 1584 aa17.05■□□□□ 0.32
SYNE3-201ENST00000334258 RICTORQ6R327 1708 aa17.05■□□□□ 0.32
SYNE3-201ENST00000334258 DDIT3P35638 169 aa17.05■□□□□ 0.32
SYNE3-201ENST00000334258 NUCB1Q02818 461 aa17.05■□□□□ 0.32
SYNE3-201ENST00000334258 K7ELQ4 463 aaPredicted RBP17.05■□□□□ 0.32
SYNE3-201ENST00000334258 ZBTB40Q9NUA8 1239 aa17.05■□□□□ 0.32
SYNE3-201ENST00000334258 CD2BP2O95400 341 aaKnown RBP17.04■□□□□ 0.32
SYNE3-201ENST00000334258 ZSCAN30Q86W11 494 aa17.04■□□□□ 0.32
SYNE3-201ENST00000334258 SIGLEC1Q9BZZ2 1709 aa17.04■□□□□ 0.32
SYNE3-201ENST00000334258 FBLN1P23142 703 aa17.04■□□□□ 0.32
SYNE3-201ENST00000334258 SLC52A1Q9NWF4 448 aa17.04■□□□□ 0.32
SYNE3-201ENST00000334258 TMPOP42166 694 aaKnown RBP17.03■□□□□ 0.32
SYNE3-201ENST00000334258 KIF1BO60333 1816 aa17.03■□□□□ 0.32
SYNE3-201ENST00000334258 PDCL3Q9H2J4 239 aa17.02■□□□□ 0.32
SYNE3-201ENST00000334258 C1orf115Q9H7X2 142 aa17.02■□□□□ 0.32
SYNE3-201ENST00000334258 RIPK4P57078 832 aa17.02■□□□□ 0.31
SYNE3-201ENST00000334258 BMP2KLQ5H9B9 411 aa17.01■□□□□ 0.31
SYNE3-201ENST00000334258 GAS2L2Q8NHY3 880 aa17.01■□□□□ 0.31
SYNE3-201ENST00000334258 CALD1Q05682 793 aaKnown RBP17.01■□□□□ 0.31
SYNE3-201ENST00000334258 TXNDC2Q86VQ3 553 aa17.01■□□□□ 0.31
SYNE3-201ENST00000334258 KIF16BQ96L93 1317 aa17.01■□□□□ 0.31
SYNE3-201ENST00000334258 NCKAP5LQ9HCH0 1330 aa17.01■□□□□ 0.31
SYNE3-201ENST00000334258 MCTP1Q6DN14 999 aa17.01■□□□□ 0.31
SYNE3-201ENST00000334258 NCOA3Q9Y6Q9 1424 aa17■□□□□ 0.31
SYNE3-201ENST00000334258 IQSEC2Q5JU85 1478 aa17■□□□□ 0.31
SYNE3-201ENST00000334258 CAVIN1Q6NZI2 390 aaKnown RBP17■□□□□ 0.31
SYNE3-201ENST00000334258 TBC1D9Q6ZT07 1266 aa17■□□□□ 0.31
SYNE3-201ENST00000334258 FAM13BQ9NYF5 915 aa16.99■□□□□ 0.31
SYNE3-201ENST00000334258 PRDM4Q9UKN5 801 aa16.99■□□□□ 0.31
SYNE3-201ENST00000334258 BAG4O95429 457 aaKnown RBP16.99■□□□□ 0.31
SYNE3-201ENST00000334258 SLC26A8Q96RN1 970 aa16.99■□□□□ 0.31
SYNE3-201ENST00000334258 R3HCC1Q9Y3T6 440 aaKnown RBP16.99■□□□□ 0.31
SYNE3-201ENST00000334258 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.99■□□□□ 0.31
SYNE3-201ENST00000334258 KIF2CQ99661 725 aa16.99■□□□□ 0.31
SYNE3-201ENST00000334258 KLHL40Q2TBA0 621 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms