RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 BMP1P13497 986 aa8.6□□□□□ -1.03
CKS1B-201ENST00000308987 ERBB4Q15303 1308 aa8.59□□□□□ -1.03
CKS1B-201ENST00000308987 H3BM21 787 aa8.59□□□□□ -1.03
CKS1B-201ENST00000308987 SIAH2O43255 324 aa8.58□□□□□ -1.04
CKS1B-201ENST00000308987 P3H3Q8IVL6 736 aa8.58□□□□□ -1.04
CKS1B-201ENST00000308987 CLASP1Q7Z460 1538 aa8.58□□□□□ -1.04
CKS1B-201ENST00000308987 TESPA1A2RU30 521 aaPredicted RBP8.57□□□□□ -1.04
CKS1B-201ENST00000308987 CAPN5O15484 640 aaPredicted RBP8.57□□□□□ -1.04
CKS1B-201ENST00000308987 WDR97A6NE52 1622 aa8.57□□□□□ -1.04
CKS1B-201ENST00000308987 TDRD9Q8NDG6 1382 aaKnown RBP8.57□□□□□ -1.04
CKS1B-201ENST00000308987 CUX1P39880 1505 aa8.56□□□□□ -1.04
CKS1B-201ENST00000308987 SNAPC4Q5SXM2 1469 aa8.56□□□□□ -1.04
CKS1B-201ENST00000308987 FGD5Q6ZNL6 1462 aa8.56□□□□□ -1.04
CKS1B-201ENST00000308987 SOGA1O94964 1423 aa8.55□□□□□ -1.04
CKS1B-201ENST00000308987 KDM4AO75164 1064 aa8.55□□□□□ -1.04
CKS1B-201ENST00000308987 CD46P15529 392 aa8.55□□□□□ -1.04
CKS1B-201ENST00000308987 SUZ12Q15022 739 aaKnown RBP8.55□□□□□ -1.04
CKS1B-201ENST00000308987 HLA-CQ95604 372 aa8.55□□□□□ -1.04
CKS1B-201ENST00000308987 SMYD5Q6GMV2 418 aa8.54□□□□□ -1.04
CKS1B-201ENST00000308987 WASF2Q9Y6W5 498 aa8.54□□□□□ -1.04
CKS1B-201ENST00000308987 PBRM1Q86U86 1689 aa8.53□□□□□ -1.04
CKS1B-201ENST00000308987 PTCRAQ6ISU1 281 aaPredicted RBP8.53□□□□□ -1.04
CKS1B-201ENST00000308987 EHBP1Q8NDI1 1231 aa8.53□□□□□ -1.04
CKS1B-201ENST00000308987 ZFP42Q96MM3 310 aa8.52□□□□□ -1.05
CKS1B-201ENST00000308987 JUNDP17535 347 aa8.51□□□□□ -1.05
CKS1B-201ENST00000308987 SYNJ1O43426 1573 aa8.51□□□□□ -1.05
CKS1B-201ENST00000308987 MAGI1Q96QZ7 1491 aaPredicted RBP8.51□□□□□ -1.05
CKS1B-201ENST00000308987 USP46P62068 366 aa8.5□□□□□ -1.05
CKS1B-201ENST00000308987 SYMPKQ92797 1274 aaKnown RBP8.49□□□□□ -1.05
CKS1B-201ENST00000308987 GRIN2BQ13224 1484 aa8.49□□□□□ -1.05
CKS1B-201ENST00000308987 ERCC6L2Q5T890 1561 aa8.48□□□□□ -1.05
CKS1B-201ENST00000308987 ABCA5Q8WWZ7 1642 aa8.48□□□□□ -1.05
CKS1B-201ENST00000308987 NUDT12Q9BQG2 462 aa8.48□□□□□ -1.05
CKS1B-201ENST00000308987 SYNJ2O15056 1496 aa8.48□□□□□ -1.05
CKS1B-201ENST00000308987 HOXA2O43364 376 aa8.47□□□□□ -1.05
CKS1B-201ENST00000308987 SH3BP2P78314 561 aa8.47□□□□□ -1.05
CKS1B-201ENST00000308987 GUCA2AQ02747 115 aa8.47□□□□□ -1.05
CKS1B-201ENST00000308987 KCTD17Q8N5Z5 321 aa8.46□□□□□ -1.06
CKS1B-201ENST00000308987 CHMP7Q8WUX9 453 aaPredicted RBP8.46□□□□□ -1.06
CKS1B-201ENST00000308987 GAPVD1Q14C86 1478 aa8.45□□□□□ -1.06
CKS1B-201ENST00000308987 KCNMA1Q12791 1236 aa8.45□□□□□ -1.06
CKS1B-201ENST00000308987 ABCA10Q8WWZ4 1543 aa8.44□□□□□ -1.06
CKS1B-201ENST00000308987 SOBPA7XYQ1 873 aa8.44□□□□□ -1.06
CKS1B-201ENST00000308987 VSIG8P0DPA2 414 aa8.44□□□□□ -1.06
CKS1B-201ENST00000308987 GSK3AP49840 483 aa8.44□□□□□ -1.06
CKS1B-201ENST00000308987 MRPL14Q6P1L8 145 aaKnown RBP8.44□□□□□ -1.06
CKS1B-201ENST00000308987 SCARF1Q14162 830 aa8.43□□□□□ -1.06
CKS1B-201ENST00000308987 RETREG3Q86VR2 466 aa8.43□□□□□ -1.06
CKS1B-201ENST00000308987 GPIHBP1Q8IV16 184 aa8.43□□□□□ -1.06
CKS1B-201ENST00000308987 PURBQ96QR8 312 aaKnown RBP8.43□□□□□ -1.06
CKS1B-201ENST00000308987 CEP170Q5SW79 1584 aa8.43□□□□□ -1.06
CKS1B-201ENST00000308987 KIF13AQ9H1H9 1805 aa8.43□□□□□ -1.06
CKS1B-201ENST00000308987 MDM2Q00987 491 aaPredicted RBP8.42□□□□□ -1.06
CKS1B-201ENST00000308987 TLL2Q9Y6L7 1015 aa8.42□□□□□ -1.06
CKS1B-201ENST00000308987 ADAMTS12P58397 1594 aa8.41□□□□□ -1.06
CKS1B-201ENST00000308987 NNTQ13423 1086 aa8.41□□□□□ -1.06
CKS1B-201ENST00000308987 SHROOM2Q13796 1616 aa8.4□□□□□ -1.06
CKS1B-201ENST00000308987 GRIN2AQ12879 1464 aa8.4□□□□□ -1.06
CKS1B-201ENST00000308987 BAP1Q92560 729 aa8.4□□□□□ -1.06
CKS1B-201ENST00000308987 BIVM-ERCC5R4GMW8 1640 aa8.4□□□□□ -1.07
CKS1B-201ENST00000308987 NUP160Q12769 1436 aa8.39□□□□□ -1.07
CKS1B-201ENST00000308987 PLEKHG3A1L390 1219 aa8.39□□□□□ -1.07
CKS1B-201ENST00000308987 CCNYL3P0C7X3 344 aa8.39□□□□□ -1.07
CKS1B-201ENST00000308987 MS4A1P11836 297 aa8.39□□□□□ -1.07
CKS1B-201ENST00000308987 TIMP2P16035 220 aa8.39□□□□□ -1.07
CKS1B-201ENST00000308987 LINC01559Q495D7 138 aa8.39□□□□□ -1.07
CKS1B-201ENST00000308987 WDR4P57081 412 aaKnown RBP8.38□□□□□ -1.07
CKS1B-201ENST00000308987 MAP2K5Q13163 448 aa8.38□□□□□ -1.07
CKS1B-201ENST00000308987 MPNDQ8N594 471 aa8.38□□□□□ -1.07
CKS1B-201ENST00000308987 UNC93B1Q9H1C4 597 aa8.38□□□□□ -1.07
CKS1B-201ENST00000308987 EVA1BQ9NVM1 165 aa8.38□□□□□ -1.07
CKS1B-201ENST00000308987 TOP2BQ02880 1626 aa8.37□□□□□ -1.07
CKS1B-201ENST00000308987 IRF6O14896 467 aa8.37□□□□□ -1.07
CKS1B-201ENST00000308987 VARSP26640 1264 aaKnown RBP8.37□□□□□ -1.07
CKS1B-201ENST00000308987 TMEM151AQ8N4L1 468 aa8.37□□□□□ -1.07
CKS1B-201ENST00000308987 KLF16Q9BXK1 252 aaPredicted RBP8.37□□□□□ -1.07
CKS1B-201ENST00000308987 PCDHGC3Q9UN70 934 aa8.37□□□□□ -1.07
CKS1B-201ENST00000308987 ADH1CP00326 375 aa8.36□□□□□ -1.07
CKS1B-201ENST00000308987 NUTM1Q86Y26 1132 aa8.36□□□□□ -1.07
CKS1B-201ENST00000308987 C6orf229H3BNL8 230 aa8.35□□□□□ -1.07
CKS1B-201ENST00000308987 PPFIA3O75145 1194 aa8.35□□□□□ -1.07
CKS1B-201ENST00000308987 FDX1P10109 184 aa8.35□□□□□ -1.07
CKS1B-201ENST00000308987 RASSF7Q02833 373 aa8.35□□□□□ -1.07
CKS1B-201ENST00000308987 ZNF511Q8NB15 262 aa8.35□□□□□ -1.07
CKS1B-201ENST00000308987 MAN1A2O60476 641 aa8.34□□□□□ -1.07
CKS1B-201ENST00000308987 GDF11O95390 407 aa8.34□□□□□ -1.07
CKS1B-201ENST00000308987 KCNH2Q12809 1159 aa8.34□□□□□ -1.07
CKS1B-201ENST00000308987 PTPRNQ16849 979 aa8.34□□□□□ -1.07
CKS1B-201ENST00000308987 WRNQ14191 1432 aaPredicted RBP eCLIP8.34□□□□□ -1.07
CKS1B-201ENST00000308987 FHAD1B1AJZ9 1412 aa8.33□□□□□ -1.08
CKS1B-201ENST00000308987 FAM217BQ9NTX9 383 aaPredicted RBP8.33□□□□□ -1.08
CKS1B-201ENST00000308987 ERICH3Q5RHP9 1530 aa8.33□□□□□ -1.08
CKS1B-201ENST00000308987 C6orf118Q5T5N4 469 aa8.32□□□□□ -1.08
CKS1B-201ENST00000308987 SUPT5HO00267 1087 aaKnown RBP8.31□□□□□ -1.08
CKS1B-201ENST00000308987 GPCPD1Q9NPB8 672 aa8.31□□□□□ -1.08
CKS1B-201ENST00000308987 ADAMTS8Q9UP79 889 aa8.31□□□□□ -1.08
CKS1B-201ENST00000308987 MINK1Q8N4C8 1332 aaPredicted RBP8.3□□□□□ -1.08
CKS1B-201ENST00000308987 RUSC2Q8N2Y8 1516 aa8.3□□□□□ -1.08
CKS1B-201ENST00000308987 ZFAND3Q9H8U3 227 aa8.3□□□□□ -1.08
CKS1B-201ENST00000308987 PRG4Q92954 1404 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms