RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 TMEM57Q8N5G2 664 aa31.02■■■□□ 2.56
SPTSSA-201ENST00000298130 ANO8Q9HCE9 1232 aaPredicted RBP31.02■■■□□ 2.56
SPTSSA-201ENST00000298130 ABCC11Q96J66 1382 aa31.01■■■□□ 2.56
SPTSSA-201ENST00000298130 ARXQ96QS3 562 aa31■■■□□ 2.55
SPTSSA-201ENST00000298130 NSD2O96028 1365 aa31■■■□□ 2.55
SPTSSA-201ENST00000298130 THUMPD2Q9BTF0 503 aaKnown RBP30.99■■■□□ 2.55
SPTSSA-201ENST00000298130 ATF7IPQ6VMQ6 1270 aa30.99■■■□□ 2.55
SPTSSA-201ENST00000298130 YEATS2Q9ULM3 1422 aa30.98■■■□□ 2.55
SPTSSA-201ENST00000298130 CDK19Q9BWU1 502 aa30.98■■■□□ 2.55
SPTSSA-201ENST00000298130 TERF2IPQ9NYB0 399 aa30.98■■■□□ 2.55
SPTSSA-201ENST00000298130 DIAPH1O60610 1272 aaKnown RBP30.98■■■□□ 2.55
SPTSSA-201ENST00000298130 USP32Q8NFA0 1604 aa30.96■■■□□ 2.55
SPTSSA-201ENST00000298130 HMOX1P09601 288 aa30.96■■■□□ 2.55
SPTSSA-201ENST00000298130 WAPLQ7Z5K2 1190 aa30.96■■■□□ 2.55
SPTSSA-201ENST00000298130 PUS7Q96PZ0 661 aaKnown RBP30.96■■■□□ 2.55
SPTSSA-201ENST00000298130 STAG3Q9UJ98 1225 aa30.96■■■□□ 2.55
SPTSSA-201ENST00000298130 VIRMAQ69YN4 1812 aaKnown RBP30.95■■■□□ 2.55
SPTSSA-201ENST00000298130 AAMPQ13685 434 aa30.94■■■□□ 2.54
SPTSSA-201ENST00000298130 ELL2O00472 640 aaPredicted RBP30.94■■■□□ 2.54
SPTSSA-201ENST00000298130 ANTXR1Q9H6X2 564 aa30.92■■■□□ 2.54
SPTSSA-201ENST00000298130 PRKAR2BP31323 418 aa30.92■■■□□ 2.54
SPTSSA-201ENST00000298130 SLC52A1Q9NWF4 448 aa30.92■■■□□ 2.54
SPTSSA-201ENST00000298130 DDX19BQ9UMR2 479 aa30.92■■■□□ 2.54
SPTSSA-201ENST00000298130 ZBTB4Q9P1Z0 1013 aaPredicted RBP30.91■■■□□ 2.54
SPTSSA-201ENST00000298130 HDGFL2Q7Z4V5 671 aaPredicted RBP30.9■■■□□ 2.54
SPTSSA-201ENST00000298130 PIK3C2BO00750 1634 aa30.9■■■□□ 2.54
SPTSSA-201ENST00000298130 ADGRB2O60241 1585 aa30.9■■■□□ 2.54
SPTSSA-201ENST00000298130 LNPKQ9C0E8 428 aa30.89■■■□□ 2.54
SPTSSA-201ENST00000298130 C1orf115Q9H7X2 142 aa30.89■■■□□ 2.54
SPTSSA-201ENST00000298130 PHACTR3Q96KR7 559 aa30.89■■■□□ 2.54
SPTSSA-201ENST00000298130 C22orf23Q9BZE7 217 aa30.89■■■□□ 2.54
SPTSSA-201ENST00000298130 CD163L1Q9NR16 1453 aa30.89■■■□□ 2.54
SPTSSA-201ENST00000298130 COL3A1P02461 1466 aaPredicted RBP30.88■■■□□ 2.53
SPTSSA-201ENST00000298130 YTHDC2Q9H6S0 1430 aaKnown RBP30.87■■■□□ 2.53
SPTSSA-201ENST00000298130 PTPRMP28827 1452 aa30.87■■■□□ 2.53
SPTSSA-201ENST00000298130 ZRANB1Q9UGI0 708 aa30.86■■■□□ 2.53
SPTSSA-201ENST00000298130 MYO5BQ9ULV0 1848 aa30.86■■■□□ 2.53
SPTSSA-201ENST00000298130 DIP2CQ9Y2E4 1556 aa30.86■■■□□ 2.53
SPTSSA-201ENST00000298130 ATAD2Q6PL18 1390 aa30.86■■■□□ 2.53
SPTSSA-201ENST00000298130 ZBTB40Q9NUA8 1239 aa30.85■■■□□ 2.53
SPTSSA-201ENST00000298130 CT47B1P0C2W7 299 aaPredicted RBP30.84■■■□□ 2.53
SPTSSA-201ENST00000298130 HDAC1Q13547 482 aaPredicted RBP30.84■■■□□ 2.53
SPTSSA-201ENST00000298130 POLKQ9UBT6 870 aa30.83■■■□□ 2.53
SPTSSA-201ENST00000298130 EMILIN1Q9Y6C2 1016 aa30.83■■■□□ 2.53
SPTSSA-201ENST00000298130 TSPYL6Q8N831 410 aa30.83■■■□□ 2.53
SPTSSA-201ENST00000298130 MLECQ14165 292 aa30.82■■■□□ 2.52
SPTSSA-201ENST00000298130 GZF1Q9H116 711 aaPredicted RBP30.82■■■□□ 2.52
SPTSSA-201ENST00000298130 NCKAP5LQ9HCH0 1330 aa30.82■■■□□ 2.52
SPTSSA-201ENST00000298130 CFAP74Q9C0B2 1584 aa30.82■■■□□ 2.52
SPTSSA-201ENST00000298130 NCBP3Q53F19 620 aaKnown RBP30.8■■■□□ 2.52
SPTSSA-201ENST00000298130 SMC5Q8IY18 1101 aa30.8■■■□□ 2.52
SPTSSA-201ENST00000298130 RSPH6AQ9H0K4 717 aa30.79■■■□□ 2.52
SPTSSA-201ENST00000298130 IPO8O15397 1037 aaKnown RBP30.77■■■□□ 2.52
SPTSSA-201ENST00000298130 NME9Q86XW9 330 aa30.77■■■□□ 2.52
SPTSSA-201ENST00000298130 IL16Q14005 1332 aa30.76■■■□□ 2.51
SPTSSA-201ENST00000298130 ARHGAP31Q2M1Z3 1444 aa30.76■■■□□ 2.51
SPTSSA-201ENST00000298130 FCHSD2O94868 740 aa30.76■■■□□ 2.51
SPTSSA-201ENST00000298130 KIF16BQ96L93 1317 aa30.75■■■□□ 2.51
SPTSSA-201ENST00000298130 ANKRD45Q5TZF3 282 aa30.74■■■□□ 2.51
SPTSSA-201ENST00000298130 ZFYVE9O95405 1425 aa30.74■■■□□ 2.51
SPTSSA-201ENST00000298130 NEO1Q92859 1461 aa30.74■■■□□ 2.51
SPTSSA-201ENST00000298130 FAM83GA6ND36 823 aa30.73■■■□□ 2.51
SPTSSA-201ENST00000298130 RRS1Q15050 365 aaKnown RBP30.73■■■□□ 2.51
SPTSSA-201ENST00000298130 PNPLA6Q8IY17 1366 aa30.73■■■□□ 2.51
SPTSSA-201ENST00000298130 DCTN1Q14203 1278 aa30.72■■■□□ 2.51
SPTSSA-201ENST00000298130 CYB5RLQ6IPT4 315 aa30.71■■■□□ 2.51
SPTSSA-201ENST00000298130 TMEM131LA2VDJ0 1609 aa30.71■■■□□ 2.51
SPTSSA-201ENST00000298130 NUCB1Q02818 461 aa30.71■■■□□ 2.51
SPTSSA-201ENST00000298130 CHD1LQ86WJ1 897 aa30.71■■■□□ 2.51
SPTSSA-201ENST00000298130 LRRC7Q96NW7 1537 aa30.7■■■□□ 2.51
SPTSSA-201ENST00000298130 VAMP4O75379 141 aa30.7■■■□□ 2.5
SPTSSA-201ENST00000298130 ZMYM3Q14202 1370 aa30.69■■■□□ 2.5
SPTSSA-201ENST00000298130 PNNQ9H307 717 aaKnown RBP30.69■■■□□ 2.5
SPTSSA-201ENST00000298130 ARHGEF40Q8TER5 1519 aa30.69■■■□□ 2.5
SPTSSA-201ENST00000298130 NFE2L2Q16236 605 aa30.68■■■□□ 2.5
SPTSSA-201ENST00000298130 FOXD4L1Q9NU39 408 aa30.68■■■□□ 2.5
SPTSSA-201ENST00000298130 TXNDC2Q86VQ3 553 aa30.67■■■□□ 2.5
SPTSSA-201ENST00000298130 MBIPQ9NS73 344 aa30.67■■■□□ 2.5
SPTSSA-201ENST00000298130 ALKQ9UM73 1620 aa30.67■■■□□ 2.5
SPTSSA-201ENST00000298130 ALDH1L2Q3SY69 923 aa30.66■■■□□ 2.5
SPTSSA-201ENST00000298130 ZBTB7BO15156 539 aaPredicted RBP30.66■■■□□ 2.5
SPTSSA-201ENST00000298130 MCM4P33991 863 aa30.66■■■□□ 2.5
SPTSSA-201ENST00000298130 MRPL50Q8N5N7 158 aaKnown RBP30.66■■■□□ 2.5
SPTSSA-201ENST00000298130 PREX1Q8TCU6 1659 aa30.65■■■□□ 2.5
SPTSSA-201ENST00000298130 HSCBQ8IWL3 235 aa30.65■■■□□ 2.5
SPTSSA-201ENST00000298130 C8orf58Q8NAV2 365 aa30.64■■■□□ 2.5
SPTSSA-201ENST00000298130 FAM135BQ49AJ0 1406 aa30.63■■■□□ 2.49
SPTSSA-201ENST00000298130 SIRT2Q8IXJ6 389 aa30.62■■■□□ 2.49
SPTSSA-201ENST00000298130 NUTM2FA1L443 756 aa30.62■■■□□ 2.49
SPTSSA-201ENST00000298130 PPIP5K1Q6PFW1 1433 aa30.62■■■□□ 2.49
SPTSSA-201ENST00000298130 IL13P35225 146 aa30.61■■■□□ 2.49
SPTSSA-201ENST00000298130 RICTORQ6R327 1708 aa30.61■■■□□ 2.49
SPTSSA-201ENST00000298130 CHMP5Q9NZZ3 219 aa30.61■■■□□ 2.49
SPTSSA-201ENST00000298130 MED14O60244 1454 aa30.61■■■□□ 2.49
SPTSSA-201ENST00000298130 FAM69CQ0P6D2 419 aa30.6■■■□□ 2.49
SPTSSA-201ENST00000298130 TWISTNBQ3B726 338 aaPredicted RBP30.6■■■□□ 2.49
SPTSSA-201ENST00000298130 KRT24Q2M2I5 525 aa30.6■■■□□ 2.49
SPTSSA-201ENST00000298130 RBM42Q9BTD8 480 aaKnown RBP30.59■■■□□ 2.49
SPTSSA-201ENST00000298130 SOX12O15370 315 aa30.57■■■□□ 2.48
SPTSSA-201ENST00000298130 CD2BP2O95400 341 aaKnown RBP30.57■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms