RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 CFAP74Q9C0B2 1584 aa18.69■□□□□ 0.58
CNOT3-201ENST00000221232 ABCC11Q96J66 1382 aa18.69■□□□□ 0.58
CNOT3-201ENST00000221232 RWDD1Q9H446 243 aaPredicted RBP18.68■□□□□ 0.58
CNOT3-201ENST00000221232 YTHDC2Q9H6S0 1430 aaKnown RBP18.68■□□□□ 0.58
CNOT3-201ENST00000221232 TRIM27P14373 513 aa18.68■□□□□ 0.58
CNOT3-201ENST00000221232 USP19O94966 1318 aa18.68■□□□□ 0.58
CNOT3-201ENST00000221232 ELL2O00472 640 aaPredicted RBP18.67■□□□□ 0.58
CNOT3-201ENST00000221232 NSD2O96028 1365 aa18.67■□□□□ 0.58
CNOT3-201ENST00000221232 PIK3C2BO00750 1634 aa18.67■□□□□ 0.58
CNOT3-201ENST00000221232 ZC3H13Q5T200 1668 aaKnown RBP18.67■□□□□ 0.58
CNOT3-201ENST00000221232 FRAT2O75474 233 aaPredicted RBP18.66■□□□□ 0.58
CNOT3-201ENST00000221232 PRKAR2BP31323 418 aa18.66■□□□□ 0.58
CNOT3-201ENST00000221232 SLKQ9H2G2 1235 aaPredicted RBP18.66■□□□□ 0.58
CNOT3-201ENST00000221232 USP35Q9P2H5 1018 aa18.66■□□□□ 0.58
CNOT3-201ENST00000221232 ATAD2Q6PL18 1390 aa18.65■□□□□ 0.58
CNOT3-201ENST00000221232 TXNDC2Q86VQ3 553 aa18.65■□□□□ 0.58
CNOT3-201ENST00000221232 ARHGEF28Q8N1W1 1705 aaKnown RBP18.65■□□□□ 0.58
CNOT3-201ENST00000221232 NINLQ9Y2I6 1382 aa18.65■□□□□ 0.58
CNOT3-201ENST00000221232 SPRYD3Q8NCJ5 442 aa18.65■□□□□ 0.58
CNOT3-201ENST00000221232 PHACTR3Q96KR7 559 aa18.64■□□□□ 0.57
CNOT3-201ENST00000221232 EMILIN1Q9Y6C2 1016 aa18.64■□□□□ 0.57
CNOT3-201ENST00000221232 ARHGAP31Q2M1Z3 1444 aa18.64■□□□□ 0.57
CNOT3-201ENST00000221232 NUTM2FA1L443 756 aa18.64■□□□□ 0.57
CNOT3-201ENST00000221232 TMEM57Q8N5G2 664 aa18.63■□□□□ 0.57
CNOT3-201ENST00000221232 RTN4Q9NQC3 1192 aaKnown RBP18.63■□□□□ 0.57
CNOT3-201ENST00000221232 POLKQ9UBT6 870 aa18.63■□□□□ 0.57
CNOT3-201ENST00000221232 PTPRMP28827 1452 aa18.63■□□□□ 0.57
CNOT3-201ENST00000221232 NME9Q86XW9 330 aa18.63■□□□□ 0.57
CNOT3-201ENST00000221232 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
CNOT3-201ENST00000221232 ATF7IPQ6VMQ6 1270 aa18.62■□□□□ 0.57
CNOT3-201ENST00000221232 IL27Q8NEV9 243 aa18.61■□□□□ 0.57
CNOT3-201ENST00000221232 MYO5BQ9ULV0 1848 aa18.61■□□□□ 0.57
CNOT3-201ENST00000221232 CD163L1Q9NR16 1453 aa18.6■□□□□ 0.57
CNOT3-201ENST00000221232 RRS1Q15050 365 aaKnown RBP18.6■□□□□ 0.57
CNOT3-201ENST00000221232 ZFYVE9O95405 1425 aa18.59■□□□□ 0.57
CNOT3-201ENST00000221232 UPF2Q9HAU5 1272 aaKnown RBP18.58■□□□□ 0.57
CNOT3-201ENST00000221232 SOX12O15370 315 aa18.57■□□□□ 0.56
CNOT3-201ENST00000221232 MFAP1P55081 439 aaKnown RBP18.57■□□□□ 0.56
CNOT3-201ENST00000221232 TSPYL6Q8N831 410 aa18.57■□□□□ 0.56
CNOT3-201ENST00000221232 ESF1Q9H501 851 aaKnown RBP18.57■□□□□ 0.56
CNOT3-201ENST00000221232 C1orf115Q9H7X2 142 aa18.57■□□□□ 0.56
CNOT3-201ENST00000221232 FCHSD2O94868 740 aa18.56■□□□□ 0.56
CNOT3-201ENST00000221232 GSE1Q14687 1217 aa18.56■□□□□ 0.56
CNOT3-201ENST00000221232 RSPH6AQ9H0K4 717 aa18.56■□□□□ 0.56
CNOT3-201ENST00000221232 DDX19BQ9UMR2 479 aa18.56■□□□□ 0.56
CNOT3-201ENST00000221232 TMEM131LA2VDJ0 1609 aa18.56■□□□□ 0.56
CNOT3-201ENST00000221232 DCTN1Q14203 1278 aa18.56■□□□□ 0.56
CNOT3-201ENST00000221232 RICTORQ6R327 1708 aa18.55■□□□□ 0.56
CNOT3-201ENST00000221232 FAM83GA6ND36 823 aa18.55■□□□□ 0.56
CNOT3-201ENST00000221232 USP32Q8NFA0 1604 aa18.55■□□□□ 0.56
CNOT3-201ENST00000221232 ALKQ9UM73 1620 aa18.55■□□□□ 0.56
CNOT3-201ENST00000221232 LNPKQ9C0E8 428 aa18.54■□□□□ 0.56
CNOT3-201ENST00000221232 PNNQ9H307 717 aaKnown RBP18.54■□□□□ 0.56
CNOT3-201ENST00000221232 AAMPQ13685 434 aa18.54■□□□□ 0.56
CNOT3-201ENST00000221232 BECN1Q14457 450 aa18.53■□□□□ 0.56
CNOT3-201ENST00000221232 COL3A1P02461 1466 aaPredicted RBP18.53■□□□□ 0.56
CNOT3-201ENST00000221232 WASLO00401 505 aaPredicted RBP18.53■□□□□ 0.56
CNOT3-201ENST00000221232 CT47B1P0C2W7 299 aaPredicted RBP18.53■□□□□ 0.56
CNOT3-201ENST00000221232 NUDT16Q96DE0 195 aaKnown RBP18.53■□□□□ 0.56
CNOT3-201ENST00000221232 NLRP1Q9C000 1473 aa18.53■□□□□ 0.56
CNOT3-201ENST00000221232 PREX1Q8TCU6 1659 aa18.53■□□□□ 0.56
CNOT3-201ENST00000221232 IPO8O15397 1037 aaKnown RBP18.52■□□□□ 0.56
CNOT3-201ENST00000221232 RIMS2Q9UQ26 1411 aa18.52■□□□□ 0.56
CNOT3-201ENST00000221232 ARHGEF40Q8TER5 1519 aa18.52■□□□□ 0.55
CNOT3-201ENST00000221232 METP08581 1390 aa18.51■□□□□ 0.55
CNOT3-201ENST00000221232 TSPOAP1O95153 1857 aa18.51■□□□□ 0.55
CNOT3-201ENST00000221232 ZBTB40Q9NUA8 1239 aa18.51■□□□□ 0.55
CNOT3-201ENST00000221232 NFE2L2Q16236 605 aa18.51■□□□□ 0.55
CNOT3-201ENST00000221232 TBC1D32Q96NH3 1257 aa18.51■□□□□ 0.55
CNOT3-201ENST00000221232 BRPF3Q9ULD4 1205 aa18.5■□□□□ 0.55
CNOT3-201ENST00000221232 NCBP3Q53F19 620 aaKnown RBP18.5■□□□□ 0.55
CNOT3-201ENST00000221232 TBC1D2Q9BYX2 928 aa18.5■□□□□ 0.55
CNOT3-201ENST00000221232 PNPLA6Q8IY17 1366 aa18.5■□□□□ 0.55
CNOT3-201ENST00000221232 IL16Q14005 1332 aa18.5■□□□□ 0.55
CNOT3-201ENST00000221232 COG3Q96JB2 828 aa18.49■□□□□ 0.55
CNOT3-201ENST00000221232 VAMP4O75379 141 aa18.48■□□□□ 0.55
CNOT3-201ENST00000221232 IL13P35225 146 aa18.48■□□□□ 0.55
CNOT3-201ENST00000221232 MBIPQ9NS73 344 aa18.48■□□□□ 0.55
CNOT3-201ENST00000221232 HDAC1Q13547 482 aaPredicted RBP18.48■□□□□ 0.55
CNOT3-201ENST00000221232 PPIP5K1Q6PFW1 1433 aa18.48■□□□□ 0.55
CNOT3-201ENST00000221232 ADGRB2O60241 1585 aa18.48■□□□□ 0.55
CNOT3-201ENST00000221232 KIF16BQ96L93 1317 aa18.48■□□□□ 0.55
CNOT3-201ENST00000221232 ANKRD45Q5TZF3 282 aa18.47■□□□□ 0.55
CNOT3-201ENST00000221232 A2ML1A8K2U0 1454 aa18.47■□□□□ 0.55
CNOT3-201ENST00000221232 C8orf58Q8NAV2 365 aa18.47■□□□□ 0.55
CNOT3-201ENST00000221232 C22orf23Q9BZE7 217 aa18.47■□□□□ 0.55
CNOT3-201ENST00000221232 ARXQ96QS3 562 aa18.46■□□□□ 0.55
CNOT3-201ENST00000221232 AEBP1Q8IUX7 1158 aa18.46■□□□□ 0.55
CNOT3-201ENST00000221232 CCDC61Q9Y6R9 512 aa18.46■□□□□ 0.55
CNOT3-201ENST00000221232 KRT24Q2M2I5 525 aa18.45■□□□□ 0.54
CNOT3-201ENST00000221232 SMC5Q8IY18 1101 aa18.44■□□□□ 0.54
CNOT3-201ENST00000221232 TWISTNBQ3B726 338 aaPredicted RBP18.44■□□□□ 0.54
CNOT3-201ENST00000221232 MRPL50Q8N5N7 158 aaKnown RBP18.44■□□□□ 0.54
CNOT3-201ENST00000221232 ALDH1L2Q3SY69 923 aa18.44■□□□□ 0.54
CNOT3-201ENST00000221232 LRRC7Q96NW7 1537 aa18.43■□□□□ 0.54
CNOT3-201ENST00000221232 SULT6B1Q6IMI4 303 aa18.43■□□□□ 0.54
CNOT3-201ENST00000221232 ZBTB7BO15156 539 aaPredicted RBP18.42■□□□□ 0.54
CNOT3-201ENST00000221232 GNAI1P63096 354 aa18.42■□□□□ 0.54
CNOT3-201ENST00000221232 SLC26A8Q96RN1 970 aa18.42■□□□□ 0.54
CNOT3-201ENST00000221232 ZMYM3Q14202 1370 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms