RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W UBP15P50101 1230 aa5.64□□□□□ -1.51
PRE9YGR135W NAM8Q00539 523 aaKnown RBP5.64□□□□□ -1.51
PRE9YGR135W BUD4P47136 1447 aa5.64□□□□□ -1.51
PRE9YGR135W TPS3P38426 1054 aaKnown RBP5.63□□□□□ -1.51
PRE9YGR135W MDJ2P42834 146 aa5.63□□□□□ -1.51
PRE9YGR135W ALD4P46367 519 aaKnown RBP5.63□□□□□ -1.51
PRE9YGR135W SUM1P46676 1062 aa5.63□□□□□ -1.51
PRE9YGR135W SVF1Q05515 481 aa5.63□□□□□ -1.51
PRE9YGR135W JIP5Q06214 492 aaPredicted RBP5.63□□□□□ -1.51
PRE9YGR135W HDA3Q06623 655 aa5.63□□□□□ -1.51
PRE9YGR135W POL5P39985 1022 aaKnown RBP5.62□□□□□ -1.51
PRE9YGR135W FPR4Q06205 392 aaPredicted RBP5.62□□□□□ -1.51
PRE9YGR135W RRP15Q06511 250 aaPredicted RBP5.62□□□□□ -1.51
PRE9YGR135W STH1P32597 1359 aa5.62□□□□□ -1.51
PRE9YGR135W TRL1P09880 827 aaKnown RBP5.61□□□□□ -1.51
PRE9YGR135W SLA1P32790 1244 aa5.61□□□□□ -1.51
PRE9YGR135W SEC8P32855 1065 aa5.61□□□□□ -1.51
PRE9YGR135W SPC42P36094 363 aa5.61□□□□□ -1.51
PRE9YGR135W MGE1P38523 228 aa5.61□□□□□ -1.51
PRE9YGR135W PPX1P38698 397 aa5.61□□□□□ -1.51
PRE9YGR135W UTP7P40055 554 aaKnown RBP5.61□□□□□ -1.51
PRE9YGR135W JJJ3P47138 172 aa5.61□□□□□ -1.51
PRE9YGR135W CWC15Q03772 175 aaKnown RBP5.61□□□□□ -1.51
PRE9YGR135W PUF6Q04373 656 aaKnown RBP5.61□□□□□ -1.51
PRE9YGR135W RKR1Q04781 1562 aa5.6□□□□□ -1.51
PRE9YGR135W PHO87P25360 923 aa5.6□□□□□ -1.51
PRE9YGR135W ALA1P40825 983 aaKnown RBP5.6□□□□□ -1.51
PRE9YGR135W YFL034WP43564 1073 aa5.6□□□□□ -1.51
PRE9YGR135W CUZ1P53899 274 aa5.6□□□□□ -1.51
PRE9YGR135W PNP1Q05788 311 aa5.6□□□□□ -1.51
PRE9YGR135W CBC2Q08920 208 aaKnown RBP RIP-Chip data5.6□□□□□ -1.51not detected
PRE9YGR135W WHI5Q12416 295 aa5.6□□□□□ -1.51
PRE9YGR135W SNQ2P32568 1501 aaKnown RBP5.59□□□□□ -1.51
PRE9YGR135W FUR4P05316 633 aaKnown RBP5.59□□□□□ -1.51
PRE9YGR135W GLO3P38682 493 aaKnown RBP5.59□□□□□ -1.51
PRE9YGR135W CEM1P39525 442 aa5.59□□□□□ -1.51
PRE9YGR135W AIM9P40053 627 aaKnown RBP5.59□□□□□ -1.51
PRE9YGR135W ATG1P53104 897 aa5.59□□□□□ -1.51
PRE9YGR135W PUN1Q06991 263 aa5.59□□□□□ -1.51
PRE9YGR135W TY1A-DR3Q12441 440 aa5.59□□□□□ -1.51
PRE9YGR135W SMC4Q12267 1418 aa5.58□□□□□ -1.52
PRE9YGR135W HAP4P14064 554 aa5.58□□□□□ -1.52
PRE9YGR135W JJJ2P46997 583 aa5.58□□□□□ -1.52
PRE9YGR135W YAF9P53930 226 aa5.58□□□□□ -1.52
PRE9YGR135W DOS2P54858 310 aa5.58□□□□□ -1.52
PRE9YGR135W SPT7P35177 1332 aa5.57□□□□□ -1.52
PRE9YGR135W DIT1P21623 536 aa5.57□□□□□ -1.52
PRE9YGR135W NMD2P38798 1089 aaKnown RBP5.57□□□□□ -1.52
PRE9YGR135W BOL3P39724 118 aa5.57□□□□□ -1.52
PRE9YGR135W YMR265CQ03508 461 aaKnown RBP5.57□□□□□ -1.52
PRE9YGR135W ATG2P53855 1592 aa5.57□□□□□ -1.52
PRE9YGR135W SEC3P33332 1336 aaKnown RBP5.56□□□□□ -1.52
PRE9YGR135W SWI5P08153 709 aa5.56□□□□□ -1.52
PRE9YGR135W QDR1P40475 563 aa5.56□□□□□ -1.52
PRE9YGR135W ACS2P52910 683 aaKnown RBP5.56□□□□□ -1.52
PRE9YGR135W RPO31P04051 1460 aa5.56□□□□□ -1.52
PRE9YGR135W RPS6AP0CX37 236 aaKnown RBP5.55□□□□□ -1.52
PRE9YGR135W RPS6BP0CX38 236 aaPredicted RBP5.55□□□□□ -1.52
PRE9YGR135W SRS2P12954 1174 aa5.55□□□□□ -1.52
PRE9YGR135W IRE1P32361 1115 aa5.55□□□□□ -1.52
PRE9YGR135W MET1P36150 593 aa5.55□□□□□ -1.52
PRE9YGR135W ROM1P53046 1155 aa5.55□□□□□ -1.52
PRE9YGR135W NUT2Q06213 157 aa5.55□□□□□ -1.52
PRE9YGR135W STB3Q12427 513 aa5.55□□□□□ -1.52
PRE9YGR135W YOL098CQ12496 1037 aa5.55□□□□□ -1.52
PRE9YGR135W YDR461C-AQ2V2P7 80 aa5.55□□□□□ -1.52
PRE9YGR135W PAN1P32521 1480 aa5.55□□□□□ -1.52
PRE9YGR135W TOP2P06786 1428 aaKnown RBP5.55□□□□□ -1.52
PRE9YGR135W TSC11P40061 1430 aa5.55□□□□□ -1.52
PRE9YGR135W GEA1P47102 1408 aaPredicted RBP5.55□□□□□ -1.52
PRE9YGR135W RNH70P53331 553 aa5.54□□□□□ -1.52
PRE9YGR135W FAR11P53917 953 aa5.54□□□□□ -1.52
PRE9YGR135W YPQ2Q06328 317 aa5.54□□□□□ -1.52
PRE9YGR135W TSC13Q99190 310 aa5.54□□□□□ -1.52
PRE9YGR135W FRT1Q99332 602 aa5.54□□□□□ -1.52
PRE9YGR135W MCM1P11746 286 aa5.53□□□□□ -1.52
PRE9YGR135W PDI1P17967 522 aaKnown RBP5.53□□□□□ -1.52
PRE9YGR135W VAN1P23642 535 aa5.53□□□□□ -1.52
PRE9YGR135W PPG1P32838 368 aa5.53□□□□□ -1.52
PRE9YGR135W VAC8P39968 578 aa5.53□□□□□ -1.52
PRE9YGR135W ACF4P47129 309 aa5.53□□□□□ -1.52
PRE9YGR135W YJR107WP47145 328 aa5.53□□□□□ -1.52
PRE9YGR135W KRE33P53914 1056 aaKnown RBP5.53□□□□□ -1.52
PRE9YGR135W MTC5Q03897 1148 aa5.53□□□□□ -1.52
PRE9YGR135W MAG2Q06436 670 aaKnown RBP5.53□□□□□ -1.52
PRE9YGR135W SYT1Q06836 1226 aa5.53□□□□□ -1.52
PRE9YGR135W GAS4Q08271 471 aa5.53□□□□□ -1.52
PRE9YGR135W YCF1P39109 1515 aaKnown RBP5.53□□□□□ -1.52
PRE9YGR135W TOP1P04786 769 aa5.52□□□□□ -1.53
PRE9YGR135W SRP40P32583 406 aaPredicted RBP5.52□□□□□ -1.53
PRE9YGR135W NTH2P35172 780 aa5.52□□□□□ -1.53
PRE9YGR135W SHM1P37292 490 aaPredicted RBP5.52□□□□□ -1.53
PRE9YGR135W PHM7Q12252 991 aa5.52□□□□□ -1.53
PRE9YGR135W PDC6P26263 563 aaKnown RBP5.51□□□□□ -1.53
PRE9YGR135W MET4P32389 672 aa5.51□□□□□ -1.53
PRE9YGR135W PRS1P32895 427 aaKnown RBP5.51□□□□□ -1.53
PRE9YGR135W ICP55P40051 511 aa5.51□□□□□ -1.53
PRE9YGR135W MAD1P40957 749 aa5.51□□□□□ -1.53
PRE9YGR135W ADE12P80210 433 aaKnown RBP5.51□□□□□ -1.53
PRE9YGR135W PSH1Q12161 406 aa5.51□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 45.6 ms