RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W RSC1P53236 928 aa3.79□□□□□ -1.8
USE1YGL098W GRX3Q03835 250 aa3.79□□□□□ -1.8
USE1YGL098W YPR097WQ06839 1073 aa3.79□□□□□ -1.8
USE1YGL098W BMS1Q08965 1183 aaKnown RBP3.79□□□□□ -1.8
USE1YGL098W YVC1Q12324 675 aa3.79□□□□□ -1.8
USE1YGL098W TCB1Q12466 1186 aa3.79□□□□□ -1.8
USE1YGL098W KIN1P13185 1064 aa3.78□□□□□ -1.8
USE1YGL098W SLY41P22215 453 aa3.78□□□□□ -1.8
USE1YGL098W SWH1P35845 1188 aa3.78□□□□□ -1.8
USE1YGL098W SAP190P36123 1033 aa3.78□□□□□ -1.8
USE1YGL098W CEP3P40969 608 aa3.78□□□□□ -1.8
USE1YGL098W STU2P46675 888 aa3.78□□□□□ -1.8
USE1YGL098W MDG1P53885 366 aa3.78□□□□□ -1.8
USE1YGL098W MRS2Q01926 470 aa3.78□□□□□ -1.8
USE1YGL098W VPS72Q03388 795 aa3.78□□□□□ -1.8
USE1YGL098W ECM16Q04217 1267 aaKnown RBP3.78□□□□□ -1.8
USE1YGL098W UTP13Q05946 817 aaKnown RBP3.78□□□□□ -1.8
USE1YGL098W RRP15Q06511 250 aaPredicted RBP3.78□□□□□ -1.8
USE1YGL098W YDL206WQ12424 762 aa3.78□□□□□ -1.8
USE1YGL098W YOR1P53049 1477 aa3.78□□□□□ -1.8
USE1YGL098W NUP157P40064 1391 aaKnown RBP3.77□□□□□ -1.81
USE1YGL098W RAD51P25454 400 aa3.77□□□□□ -1.81
USE1YGL098W RTT107P38850 1070 aa3.77□□□□□ -1.81
USE1YGL098W RIO2P40160 425 aaKnown RBP3.77□□□□□ -1.81
USE1YGL098W BUD27P43573 796 aaKnown RBP RIP-Chip data3.77□□□□□ -1.81not detected
USE1YGL098W RPA14P50106 137 aa3.77□□□□□ -1.81
USE1YGL098W YNL050CP53952 270 aa3.77□□□□□ -1.81
USE1YGL098W NAM8Q00539 523 aaKnown RBP3.77□□□□□ -1.81
USE1YGL098W YMR196WQ04336 1088 aa3.77□□□□□ -1.81
USE1YGL098W SEC39Q12745 709 aa3.77□□□□□ -1.81
USE1YGL098W YOL087CQ99247 1116 aa3.77□□□□□ -1.81
USE1YGL098W TY1B-DR4Q07793 1604 aa3.77□□□□□ -1.81
USE1YGL098W YCF1P39109 1515 aaKnown RBP3.76□□□□□ -1.81
USE1YGL098W RAD3P06839 778 aa3.76□□□□□ -1.81
USE1YGL098W KAR3P17119 729 aa3.76□□□□□ -1.81
USE1YGL098W RRP14P36080 434 aaKnown RBP3.76□□□□□ -1.81
USE1YGL098W YBL086CP38177 466 aa3.76□□□□□ -1.81
USE1YGL098W GUA1P38625 525 aaKnown RBP3.76□□□□□ -1.81
USE1YGL098W NDC80P40460 691 aa3.76□□□□□ -1.81
USE1YGL098W PAP2P53632 584 aaKnown RBP3.76□□□□□ -1.81
USE1YGL098W NAB6Q03735 1134 aaKnown RBP RIP-Chip data3.76□□□□□ -1.81not detected
USE1YGL098W IOC4Q04213 475 aa3.76□□□□□ -1.81
USE1YGL098W YDL144CQ07589 356 aa3.76□□□□□ -1.81
USE1YGL098W GCN2P15442 1659 aa3.75□□□□□ -1.81
USE1YGL098W SRS2P12954 1174 aa3.75□□□□□ -1.81
USE1YGL098W CYC8P14922 966 aa3.75□□□□□ -1.81
USE1YGL098W MCM2P29469 868 aa3.75□□□□□ -1.81
USE1YGL098W RKM3P38222 552 aa3.75□□□□□ -1.81
USE1YGL098W PBY1P38254 753 aa3.75□□□□□ -1.81
USE1YGL098W HOS4P40480 1083 aa3.75□□□□□ -1.81
USE1YGL098W RSM25P40496 264 aa3.75□□□□□ -1.81
USE1YGL098W PXR1P53335 271 aaPredicted RBP3.75□□□□□ -1.81
USE1YGL098W ERV41Q04651 352 aa3.75□□□□□ -1.81
USE1YGL098W MMP1Q12372 583 aa3.75□□□□□ -1.81
USE1YGL098W NOP56Q12460 504 aaKnown RBP RIP-Chip data3.75□□□□□ -1.81not detected
USE1YGL098W KOG1P38873 1557 aa3.75□□□□□ -1.81
USE1YGL098W TOP1P04786 769 aa3.74□□□□□ -1.81
USE1YGL098W ARG82P07250 355 aa3.74□□□□□ -1.81
USE1YGL098W MRC1P25588 1096 aa3.74□□□□□ -1.81
USE1YGL098W MET5P47169 1442 aa3.74□□□□□ -1.81
USE1YGL098W YGL140CP53120 1219 aa3.74□□□□□ -1.81
USE1YGL098W YMR187CQ03236 431 aa3.74□□□□□ -1.81
USE1YGL098W ESP1Q03018 1630 aa3.73□□□□□ -1.81
USE1YGL098W VPS15P22219 1454 aa3.73□□□□□ -1.81
USE1YGL098W SUI2P20459 304 aaKnown RBP3.73□□□□□ -1.81
USE1YGL098W RPN12P32496 274 aa3.73□□□□□ -1.81
USE1YGL098W VPS41P38959 992 aa3.73□□□□□ -1.81
USE1YGL098W MPP10P47083 593 aaKnown RBP3.73□□□□□ -1.81
USE1YGL098W CSN12P47130 423 aa3.73□□□□□ -1.81
USE1YGL098W PUS6P53294 404 aa3.73□□□□□ -1.81
USE1YGL098W APP1P53933 587 aa3.73□□□□□ -1.81
USE1YGL098W YMR102CQ03177 834 aa3.73□□□□□ -1.81
USE1YGL098W PKH3Q03306 898 aaPredicted RBP3.73□□□□□ -1.81
USE1YGL098W SML1Q04964 104 aa3.73□□□□□ -1.81
USE1YGL098W ALR1Q08269 859 aa3.73□□□□□ -1.81
USE1YGL098W APL5Q08951 932 aaKnown RBP3.73□□□□□ -1.81
USE1YGL098W GIN4Q12263 1142 aa3.73□□□□□ -1.81
USE1YGL098W PDR5P33302 1511 aaKnown RBP3.73□□□□□ -1.81
USE1YGL098W GEA2P39993 1459 aaKnown RBP3.73□□□□□ -1.81
USE1YGL098W RKR1Q04781 1562 aa3.72□□□□□ -1.81
USE1YGL098W PDR15Q04182 1529 aaKnown RBP3.72□□□□□ -1.81
USE1YGL098W TAF13P11747 167 aa3.72□□□□□ -1.81
USE1YGL098W TRM1P15565 570 aaKnown RBP3.72□□□□□ -1.81
USE1YGL098W PET123P17558 318 aa3.72□□□□□ -1.81
USE1YGL098W SPT5P27692 1063 aaKnown RBP3.72□□□□□ -1.81
USE1YGL098W GLN1P32288 370 aaKnown RBP3.72□□□□□ -1.81
USE1YGL098W GDT1P38301 280 aaPredicted RBP3.72□□□□□ -1.81
USE1YGL098W NAB3P38996 802 aaKnown RBP RIP-Chip data3.72□□□□□ -1.81not detected
USE1YGL098W BDH2P39713 417 aa3.72□□□□□ -1.81
USE1YGL098W SNU71P53207 620 aaKnown RBP3.72□□□□□ -1.81
USE1YGL098W YPL034WQ03083 165 aa3.72□□□□□ -1.81
USE1YGL098W TLG1Q03322 224 aa3.72□□□□□ -1.81
USE1YGL098W TDA6Q06466 467 aa3.72□□□□□ -1.81
USE1YGL098W ARD1P07347 238 aaPredicted RBP3.71□□□□□ -1.82
USE1YGL098W HSC82P15108 705 aaKnown RBP3.71□□□□□ -1.82
USE1YGL098W PKC1P24583 1151 aa3.71□□□□□ -1.82
USE1YGL098W VAC17P25591 423 aa3.71□□□□□ -1.82
USE1YGL098W PSO2P30620 661 aa3.71□□□□□ -1.82
USE1YGL098W HSP104P31539 908 aaKnown RBP3.71□□□□□ -1.82
USE1YGL098W RPC82P32349 654 aa3.71□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 30.9 ms