RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ZSCAN12O43309 604 aa5.59□□□□□ -1.51
SCN1A-220ENST00000641603 K7ELQ4 463 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-220ENST00000641603 L3MBTL2Q969R5 705 aa5.59□□□□□ -1.51
SCN1A-220ENST00000641603 CCDC171Q6TFL3 1326 aa5.59□□□□□ -1.51
SCN1A-220ENST00000641603 HSP90AB4PQ58FF6 505 aa5.59□□□□□ -1.51
SCN1A-220ENST00000641603 CPLX2Q6PUV4 134 aaKnown RBP5.59□□□□□ -1.51
SCN1A-220ENST00000641603 OGFRQ9NZT2 677 aa5.59□□□□□ -1.51
SCN1A-220ENST00000641603 BRD2P25440 801 aaKnown RBP5.59□□□□□ -1.52
SCN1A-220ENST00000641603 KIF18AQ8NI77 898 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 ZNF622Q969S3 477 aaKnown RBP eCLIP5.58□□□□□ -1.52
SCN1A-220ENST00000641603 PSMA5P28066 241 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 MCTP1Q6DN14 999 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 ZNF592Q92610 1267 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 SMARCE1Q969G3 411 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 LUC7LQ9NQ29 371 aaKnown RBP5.58□□□□□ -1.52
SCN1A-220ENST00000641603 GSDMDP57764 484 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 NUTM1Q86Y26 1132 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 RAPGEF2Q9Y4G8 1499 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 DNAAF4Q8WXU2 420 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 SPAG9O60271 1321 aaKnown RBP5.58□□□□□ -1.52
SCN1A-220ENST00000641603 TRIM5Q9C035 493 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 GTF2A1P52655 376 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-220ENST00000641603 CCDC47Q96A33 483 aaKnown RBP5.58□□□□□ -1.52
SCN1A-220ENST00000641603 RBM10P98175 930 aaKnown RBP5.58□□□□□ -1.52
SCN1A-220ENST00000641603 SF3A1Q15459 793 aaKnown RBP5.58□□□□□ -1.52
SCN1A-220ENST00000641603 UBXN4Q92575 508 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 FYCO1Q9BQS8 1478 aa5.58□□□□□ -1.52
SCN1A-220ENST00000641603 H3BQV1 296 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 LIG1P18858 919 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 IFFO2Q5TF58 517 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 SMC3Q9UQE7 1217 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 SLC26A8Q96RN1 970 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 DACH1Q9UI36 760 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 RASSF4Q9H2L5 321 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 IPO4Q8TEX9 1081 aaKnown RBP5.57□□□□□ -1.52
SCN1A-220ENST00000641603 CEP89Q96ST8 783 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 ZKSCAN5Q9Y2L8 839 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 CUX2O14529 1486 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 STK31Q9BXU1 1019 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 A0A1B0GUL7 405 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 JMYQ8N9B5 988 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 DCAF11Q8TEB1 546 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 DYDC1Q8WWB3 177 aa5.57□□□□□ -1.52
SCN1A-220ENST00000641603 FGD6Q6ZV73 1430 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 ANKRD1Q15327 319 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 CCDC83Q8IWF9 413 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 BICD2Q8TD16 824 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 HFM1A2PYH4 1435 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 KINO60870 393 aaKnown RBP5.56□□□□□ -1.52
SCN1A-220ENST00000641603 NOL10Q9BSC4 688 aaKnown RBP5.56□□□□□ -1.52
SCN1A-220ENST00000641603 TACO1Q9BSH4 297 aaKnown RBP5.56□□□□□ -1.52
SCN1A-220ENST00000641603 HIP1O00291 1037 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 SLC4A3P48751 1232 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 CEP57L1Q8IYX8 460 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 CCAR2Q8N163 923 aaKnown RBP5.56□□□□□ -1.52
SCN1A-220ENST00000641603 MYCBPQ99417 103 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-220ENST00000641603 ERLIN2O94905 339 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 ZNF397Q8NF99 534 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-220ENST00000641603 NAP1L2Q9ULW6 460 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-220ENST00000641603 OLFM4Q6UX06 510 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 TERF2IPQ9NYB0 399 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 MYOM3Q5VTT5 1437 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 TDO2P48775 406 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 BRMS1Q9HCU9 246 aa5.56□□□□□ -1.52
SCN1A-220ENST00000641603 HDGFL2Q7Z4V5 671 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-220ENST00000641603 CCDC50Q8IVM0 306 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 ZSCAN31Q96LW9 406 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-220ENST00000641603 ZNF396Q96N95 335 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-220ENST00000641603 SARNPP82979 210 aaKnown RBP5.55□□□□□ -1.52
SCN1A-220ENST00000641603 NEUROD2Q15784 382 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 CCDC183Q5T5S1 534 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 AKAP17AQ02040 695 aaKnown RBP5.55□□□□□ -1.52
SCN1A-220ENST00000641603 TMX4Q9H1E5 349 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-220ENST00000641603 EFCAB5A4FU69 1503 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 SMC2O95347 1197 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 NF2P35240 595 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 PKD2Q13563 968 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 FILIP1LQ4L180 1135 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 A0A1B0GUA9 196 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 PPP4R3BQ5MIZ7 849 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 BCCIPQ9P287 314 aaKnown RBP eCLIP5.55□□□□□ -1.52
SCN1A-220ENST00000641603 SMTNL1A8MU46 457 aa5.55□□□□□ -1.52
SCN1A-220ENST00000641603 NOL7Q9UMY1 257 aaKnown RBP5.54□□□□□ -1.52
SCN1A-220ENST00000641603 EFCC1Q9HA90 598 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 LRRC9Q6ZRR7 1453 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 ERC2O15083 957 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 CTAGE5O15320 804 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 KRT85P78386 507 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 KIF3BO15066 747 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 TUBB2AQ13885 445 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 TUBB2BQ9BVA1 445 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 RUNDC1Q96C34 613 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 PRPF40AO75400 957 aaKnown RBP5.54□□□□□ -1.52
SCN1A-220ENST00000641603 PTPN14Q15678 1187 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 IBTKQ9P2D0 1353 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-220ENST00000641603 SPATS2Q86XZ4 545 aaKnown RBP5.54□□□□□ -1.52
SCN1A-220ENST00000641603 PPM1EQ8WY54 764 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 EZRP15311 586 aaKnown RBP5.54□□□□□ -1.52
SCN1A-220ENST00000641603 PATL2C9JE40 543 aaKnown RBP5.54□□□□□ -1.52
SCN1A-220ENST00000641603 POGKQ9P215 609 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms