RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 STK26Q9P289 416 aa23.01■■□□□ 1.27
SHKBP1-216ENST00000598201 CARD14Q9BXL6 1004 aa23.01■■□□□ 1.27
SHKBP1-216ENST00000598201 SENP3-EIF4A1A0A087X0R7 540 aa22.99■■□□□ 1.27
SHKBP1-216ENST00000598201 FKBP8Q14318 412 aa22.99■■□□□ 1.27
SHKBP1-216ENST00000598201 ALKQ9UM73 1620 aa22.99■■□□□ 1.27
SHKBP1-216ENST00000598201 STRCQ7RTU9 1775 aa22.99■■□□□ 1.27
SHKBP1-216ENST00000598201 NPC1L1Q9UHC9 1359 aa22.98■■□□□ 1.27
SHKBP1-216ENST00000598201 BCANQ96GW7 911 aa22.97■■□□□ 1.27
SHKBP1-216ENST00000598201 TULP4Q9NRJ4 1543 aa22.97■■□□□ 1.27
SHKBP1-216ENST00000598201 SAFB2Q14151 953 aaKnown RBP eCLIP22.97■■□□□ 1.27
SHKBP1-216ENST00000598201 YTHDC2Q9H6S0 1430 aaKnown RBP22.96■■□□□ 1.27
SHKBP1-216ENST00000598201 PPP2R1AP30153 589 aa22.96■■□□□ 1.27
SHKBP1-216ENST00000598201 MED14O60244 1454 aa22.96■■□□□ 1.27
SHKBP1-216ENST00000598201 PLEKHG1Q9ULL1 1385 aa22.96■■□□□ 1.27
SHKBP1-216ENST00000598201 NPHP4O75161 1426 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-216ENST00000598201 SLC12A5Q9H2X9 1139 aa22.95■■□□□ 1.26
SHKBP1-216ENST00000598201 DMRT2Q9Y5R5 561 aa22.94■■□□□ 1.26
SHKBP1-216ENST00000598201 EVC2Q86UK5 1308 aa22.94■■□□□ 1.26
SHKBP1-216ENST00000598201 NEFLP07196 543 aa22.91■■□□□ 1.26
SHKBP1-216ENST00000598201 PRAM1Q96QH2 718 aa22.91■■□□□ 1.26
SHKBP1-216ENST00000598201 PUS7Q96PZ0 661 aaKnown RBP22.91■■□□□ 1.26
SHKBP1-216ENST00000598201 SLC26A8Q96RN1 970 aa22.91■■□□□ 1.26
SHKBP1-216ENST00000598201 CABP2Q9NPB3 220 aa22.89■■□□□ 1.26
SHKBP1-216ENST00000598201 NSD3Q9BZ95 1437 aa22.88■■□□□ 1.25
SHKBP1-216ENST00000598201 SETD1AO15047 1707 aaKnown RBP22.88■■□□□ 1.25
SHKBP1-216ENST00000598201 MINK1Q8N4C8 1332 aaPredicted RBP22.87■■□□□ 1.25
SHKBP1-216ENST00000598201 POGKQ9P215 609 aa22.87■■□□□ 1.25
SHKBP1-216ENST00000598201 NRXN3Q9Y4C0 1643 aa22.87■■□□□ 1.25
SHKBP1-216ENST00000598201 TBX22Q9Y458 520 aa22.86■■□□□ 1.25
SHKBP1-216ENST00000598201 ADAMTS13Q76LX8 1427 aa22.86■■□□□ 1.25
SHKBP1-216ENST00000598201 SMG6Q86US8 1419 aaKnown RBP22.85■■□□□ 1.25
SHKBP1-216ENST00000598201 BLMP54132 1417 aaPredicted RBP22.84■■□□□ 1.25
SHKBP1-216ENST00000598201 INSRP06213 1382 aa22.83■■□□□ 1.25
SHKBP1-216ENST00000598201 SRPK2P78362 688 aaKnown RBP22.82■■□□□ 1.24
SHKBP1-216ENST00000598201 METP08581 1390 aa22.82■■□□□ 1.24
SHKBP1-216ENST00000598201 ADAMTS8Q9UP79 889 aa22.81■■□□□ 1.24
SHKBP1-216ENST00000598201 NUDCQ9Y266 331 aa22.81■■□□□ 1.24
SHKBP1-216ENST00000598201 ANKRD36BQ8N2N9 1353 aa22.81■■□□□ 1.24
SHKBP1-216ENST00000598201 DLC1Q96QB1 1528 aa22.8■■□□□ 1.24
SHKBP1-216ENST00000598201 IRX6P78412 446 aaPredicted RBP22.8■■□□□ 1.24
SHKBP1-216ENST00000598201 WAPLQ7Z5K2 1190 aa22.8■■□□□ 1.24
SHKBP1-216ENST00000598201 SALL2Q9Y467 1007 aaPredicted RBP22.8■■□□□ 1.24
SHKBP1-216ENST00000598201 DIP2AQ14689 1571 aa22.8■■□□□ 1.24
SHKBP1-216ENST00000598201 PLEKHH1Q9ULM0 1364 aa22.8■■□□□ 1.24
SHKBP1-216ENST00000598201 ABCC11Q96J66 1382 aa22.79■■□□□ 1.24
SHKBP1-216ENST00000598201 USP32Q8NFA0 1604 aa22.78■■□□□ 1.24
SHKBP1-216ENST00000598201 CDK19Q9BWU1 502 aa22.77■■□□□ 1.23
SHKBP1-216ENST00000598201 WDR43Q15061 677 aaKnown RBP eCLIP22.76■■□□□ 1.23
SHKBP1-216ENST00000598201 ATAD2Q6PL18 1390 aa22.76■■□□□ 1.23
SHKBP1-216ENST00000598201 MORC1Q86VD1 984 aa22.75■■□□□ 1.23
SHKBP1-216ENST00000598201 CGNL1Q0VF96 1302 aa22.75■■□□□ 1.23
SHKBP1-216ENST00000598201 A0A1W2PP64 1363 aa22.75■■□□□ 1.23
SHKBP1-216ENST00000598201 PIK3R4Q99570 1358 aa22.75■■□□□ 1.23
SHKBP1-216ENST00000598201 NINLQ9Y2I6 1382 aa22.75■■□□□ 1.23
SHKBP1-216ENST00000598201 ZNF335Q9H4Z2 1342 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-216ENST00000598201 KCNA6P17658 529 aa22.73■■□□□ 1.23
SHKBP1-216ENST00000598201 TNNT2P45379 298 aaPredicted RBP22.72■■□□□ 1.23
SHKBP1-216ENST00000598201 AMOTL2Q9Y2J4 779 aa22.72■■□□□ 1.23
SHKBP1-216ENST00000598201 CD163L1Q9NR16 1453 aa22.72■■□□□ 1.23
SHKBP1-216ENST00000598201 PTPRUQ92729 1446 aa22.71■■□□□ 1.23
SHKBP1-216ENST00000598201 CHD2O14647 1828 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-216ENST00000598201 TECPR2O15040 1411 aa22.68■■□□□ 1.22
SHKBP1-216ENST00000598201 POLR3AO14802 1390 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-216ENST00000598201 CDCA7LQ96GN5 454 aa22.68■■□□□ 1.22
SHKBP1-216ENST00000598201 PDE3BQ13370 1112 aa22.67■■□□□ 1.22
SHKBP1-216ENST00000598201 CABP1Q9NZU7 370 aa22.67■■□□□ 1.22
SHKBP1-216ENST00000598201 NSD2O96028 1365 aa22.67■■□□□ 1.22
SHKBP1-216ENST00000598201 KNDC1Q76NI1 1749 aa22.67■■□□□ 1.22
SHKBP1-216ENST00000598201 TERF2IPQ9NYB0 399 aa22.67■■□□□ 1.22
SHKBP1-216ENST00000598201 FAM135BQ49AJ0 1406 aa22.66■■□□□ 1.22
SHKBP1-216ENST00000598201 RNF123Q5XPI4 1314 aa22.65■■□□□ 1.22
SHKBP1-216ENST00000598201 SIRT1Q96EB6 747 aa22.65■■□□□ 1.22
SHKBP1-216ENST00000598201 STRCP1A6NGW2 1772 aa22.65■■□□□ 1.22
SHKBP1-216ENST00000598201 CPS1P31327 1500 aa22.65■■□□□ 1.22
SHKBP1-216ENST00000598201 CCDC146Q8IYE0 955 aa22.64■■□□□ 1.22
SHKBP1-216ENST00000598201 NWD1Q149M9 1564 aa22.64■■□□□ 1.22
SHKBP1-216ENST00000598201 ROBO2Q9HCK4 1378 aa22.63■■□□□ 1.21
SHKBP1-216ENST00000598201 WASLO00401 505 aaPredicted RBP22.63■■□□□ 1.21
SHKBP1-216ENST00000598201 XRN1Q8IZH2 1706 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-216ENST00000598201 MTHFSP49914 203 aa22.62■■□□□ 1.21
SHKBP1-216ENST00000598201 GGNBP2Q9H3C7 697 aa22.62■■□□□ 1.21
SHKBP1-216ENST00000598201 HDGFL2Q7Z4V5 671 aaPredicted RBP22.62■■□□□ 1.21
SHKBP1-216ENST00000598201 PROSER2Q86WR7 435 aaPredicted RBP22.62■■□□□ 1.21
SHKBP1-216ENST00000598201 FYB1O15117 783 aa22.61■■□□□ 1.21
SHKBP1-216ENST00000598201 ERICH6BQ5W0A0 696 aa22.61■■□□□ 1.21
SHKBP1-216ENST00000598201 NKTRP30414 1462 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-216ENST00000598201 LTBP4Q8N2S1 1624 aa22.6■■□□□ 1.21
SHKBP1-216ENST00000598201 SHPRHQ149N8 1683 aa22.6■■□□□ 1.21
SHKBP1-216ENST00000598201 RBM33Q96EV2 1170 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-216ENST00000598201 PTCH1Q13635 1447 aa22.58■■□□□ 1.21
SHKBP1-216ENST00000598201 ZNF521Q96K83 1311 aa22.58■■□□□ 1.21
SHKBP1-216ENST00000598201 ATP7BP35670 1465 aa22.57■■□□□ 1.2
SHKBP1-216ENST00000598201 APAF1O14727 1248 aa22.57■■□□□ 1.2
SHKBP1-216ENST00000598201 LRRC7Q96NW7 1537 aa22.56■■□□□ 1.2
SHKBP1-216ENST00000598201 PPIP5K1Q6PFW1 1433 aa22.55■■□□□ 1.2
SHKBP1-216ENST00000598201 TMEM94Q12767 1356 aa22.55■■□□□ 1.2
SHKBP1-216ENST00000598201 NUDT16Q96DE0 195 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-216ENST00000598201 RCAN3Q9UKA8 241 aa22.54■■□□□ 1.2
SHKBP1-216ENST00000598201 PPP4R2Q9NY27 417 aa22.54■■□□□ 1.2
SHKBP1-216ENST00000598201 ANKRD26Q9UPS8 1709 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms