RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 ITGAEP38570 1179 aa21.15■□□□□ 0.98
SHKBP1-208ENST00000595726 COL22A1Q8NFW1 1626 aaPredicted RBP21.15■□□□□ 0.98
SHKBP1-208ENST00000595726 ROCK1Q13464 1354 aa21.13■□□□□ 0.97
SHKBP1-208ENST00000595726 NEXMIFQ5QGS0 1516 aa21.13■□□□□ 0.97
SHKBP1-208ENST00000595726 NPHP3Q7Z494 1330 aa21.12■□□□□ 0.97
SHKBP1-208ENST00000595726 UNC5CLQ8IV45 518 aa21.11■□□□□ 0.97
SHKBP1-208ENST00000595726 RALGAPBQ86X10 1494 aa21.11■□□□□ 0.97
SHKBP1-208ENST00000595726 NUTM2FA1L443 756 aa21.1■□□□□ 0.97
SHKBP1-208ENST00000595726 PSDA5PKW4 1024 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-208ENST00000595726 SPHKAPQ2M3C7 1700 aa21.09■□□□□ 0.97
SHKBP1-208ENST00000595726 PXDNQ92626 1479 aa21.09■□□□□ 0.97
SHKBP1-208ENST00000595726 SF3B2Q13435 895 aaKnown RBP21.09■□□□□ 0.97
SHKBP1-208ENST00000595726 GLI3P10071 1580 aa21.09■□□□□ 0.97
SHKBP1-208ENST00000595726 SEPT12Q8IYM1 358 aa21.08■□□□□ 0.97
SHKBP1-208ENST00000595726 CLTCL1P53675 1640 aa21.07■□□□□ 0.96
SHKBP1-208ENST00000595726 MARF1Q9Y4F3 1742 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-208ENST00000595726 VGFO15240 615 aaPredicted RBP21.05■□□□□ 0.96
SHKBP1-208ENST00000595726 PLEKHG5O94827 1062 aa21.04■□□□□ 0.96
SHKBP1-208ENST00000595726 BRWD3Q6RI45 1802 aa21.04■□□□□ 0.96
SHKBP1-208ENST00000595726 SLIT2O94813 1529 aa21.04■□□□□ 0.96
SHKBP1-208ENST00000595726 HFM1A2PYH4 1435 aa21.04■□□□□ 0.96
SHKBP1-208ENST00000595726 HRCP23327 699 aa21.03■□□□□ 0.96
SHKBP1-208ENST00000595726 LRP5O75197 1615 aa21.01■□□□□ 0.95
SHKBP1-208ENST00000595726 WAPLQ7Z5K2 1190 aa21.01■□□□□ 0.95
SHKBP1-208ENST00000595726 KRT27Q7Z3Y8 459 aa21■□□□□ 0.95
SHKBP1-208ENST00000595726 CABLES1Q8TDN4 633 aa21■□□□□ 0.95
SHKBP1-208ENST00000595726 CCDC9Q9Y3X0 531 aaKnown RBP21■□□□□ 0.95
SHKBP1-208ENST00000595726 SPATA31A3Q5VYP0 1347 aa21■□□□□ 0.95
SHKBP1-208ENST00000595726 STK26Q9P289 416 aa20.99■□□□□ 0.95
SHKBP1-208ENST00000595726 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.98■□□□□ 0.95
SHKBP1-208ENST00000595726 PRAG1Q86YV5 1406 aa20.98■□□□□ 0.95
SHKBP1-208ENST00000595726 VPS72Q15906 364 aa20.98■□□□□ 0.95
SHKBP1-208ENST00000595726 LRPPRCP42704 1394 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-208ENST00000595726 NAIPQ13075 1403 aa20.97■□□□□ 0.95
SHKBP1-208ENST00000595726 ONECUT3O60422 494 aaPredicted RBP20.97■□□□□ 0.95
SHKBP1-208ENST00000595726 KRT28Q7Z3Y7 464 aa20.97■□□□□ 0.95
SHKBP1-208ENST00000595726 CDC42BPGQ6DT37 1551 aa20.96■□□□□ 0.95
SHKBP1-208ENST00000595726 HAP1P54257 671 aaPredicted RBP20.95■□□□□ 0.94
SHKBP1-208ENST00000595726 KIF1BO60333 1816 aa20.94■□□□□ 0.94
SHKBP1-208ENST00000595726 A0A0G2JS52 829 aa20.94■□□□□ 0.94
SHKBP1-208ENST00000595726 BAG6P46379 1132 aa20.94■□□□□ 0.94
SHKBP1-208ENST00000595726 MYT1Q01538 1121 aa20.94■□□□□ 0.94
SHKBP1-208ENST00000595726 EN1Q05925 392 aaPredicted RBP20.94■□□□□ 0.94
SHKBP1-208ENST00000595726 R3HDM1Q15032 1099 aaKnown RBP20.93■□□□□ 0.94
SHKBP1-208ENST00000595726 FAM182BQ5T319 152 aa20.92■□□□□ 0.94
SHKBP1-208ENST00000595726 RPGRIP1LQ68CZ1 1315 aa20.92■□□□□ 0.94
SHKBP1-208ENST00000595726 PPARGC1BQ86YN6 1023 aaKnown RBP20.91■□□□□ 0.94
SHKBP1-208ENST00000595726 USP32Q8NFA0 1604 aa20.91■□□□□ 0.94
SHKBP1-208ENST00000595726 PLEKHH1Q9ULM0 1364 aa20.91■□□□□ 0.94
SHKBP1-208ENST00000595726 FAM83GA6ND36 823 aa20.9■□□□□ 0.94
SHKBP1-208ENST00000595726 FAM98CQ17RN3 349 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-208ENST00000595726 ADGRF5Q8IZF2 1346 aa20.89■□□□□ 0.93
SHKBP1-208ENST00000595726 TMEM132EQ6IEE7 984 aa20.89■□□□□ 0.93
SHKBP1-208ENST00000595726 LMOD2Q6P5Q4 547 aa20.89■□□□□ 0.93
SHKBP1-208ENST00000595726 CCDC144AA2RUR9 1427 aa20.87■□□□□ 0.93
SHKBP1-208ENST00000595726 PSME1Q06323 249 aa20.84■□□□□ 0.93
SHKBP1-208ENST00000595726 PHF8Q9UPP1 1060 aa20.84■□□□□ 0.93
SHKBP1-208ENST00000595726 TNS3Q68CZ2 1445 aa20.83■□□□□ 0.93
SHKBP1-208ENST00000595726 PLCH1Q4KWH8 1693 aa20.83■□□□□ 0.92
SHKBP1-208ENST00000595726 PPLO60437 1756 aa20.82■□□□□ 0.92
SHKBP1-208ENST00000595726 EZH2Q15910 746 aaKnown RBP20.82■□□□□ 0.92
SHKBP1-208ENST00000595726 RGL3Q3MIN7 710 aa20.82■□□□□ 0.92
SHKBP1-208ENST00000595726 TECPR2O15040 1411 aa20.81■□□□□ 0.92
SHKBP1-208ENST00000595726 YY1P25490 414 aa20.81■□□□□ 0.92
SHKBP1-208ENST00000595726 BTG4Q9NY30 223 aa20.81■□□□□ 0.92
SHKBP1-208ENST00000595726 ABCC11Q96J66 1382 aa20.81■□□□□ 0.92
SHKBP1-208ENST00000595726 FMN2Q9NZ56 1722 aa20.8■□□□□ 0.92
SHKBP1-208ENST00000595726 NWD2Q9ULI1 1742 aa20.79■□□□□ 0.92
SHKBP1-208ENST00000595726 SLC4A1APQ9BWU0 796 aaKnown RBP20.79■□□□□ 0.92
SHKBP1-208ENST00000595726 KIF1AQ12756 1690 aa20.78■□□□□ 0.92
SHKBP1-208ENST00000595726 PMFBP1Q8TBY8 1022 aa20.77■□□□□ 0.92
SHKBP1-208ENST00000595726 SBNO1A3KN83 1393 aa20.76■□□□□ 0.91
SHKBP1-208ENST00000595726 RGPD8O14715 1765 aaPredicted RBP20.76■□□□□ 0.91
SHKBP1-208ENST00000595726 RRBP1Q9P2E9 1410 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-208ENST00000595726 ARHGEF10O15013 1369 aa20.74■□□□□ 0.91
SHKBP1-208ENST00000595726 TRIM37O94972 964 aa20.74■□□□□ 0.91
SHKBP1-208ENST00000595726 SAFB2Q14151 953 aaKnown RBP eCLIP20.74■□□□□ 0.91
SHKBP1-208ENST00000595726 CAMKK2Q96RR4 588 aa20.74■□□□□ 0.91
SHKBP1-208ENST00000595726 ABCA3Q99758 1704 aa20.73■□□□□ 0.91
SHKBP1-208ENST00000595726 YTHDC2Q9H6S0 1430 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-208ENST00000595726 SPATA31A5Q5VU36 1347 aa20.73■□□□□ 0.91
SHKBP1-208ENST00000595726 SPATA31A7Q8IWB4 1347 aa20.73■□□□□ 0.91
SHKBP1-208ENST00000595726 NRXN1Q9ULB1 1477 aa20.72■□□□□ 0.91
SHKBP1-208ENST00000595726 RGPD1P0DJD0 1748 aa20.72■□□□□ 0.91
SHKBP1-208ENST00000595726 DISP2A7MBM2 1401 aa20.7■□□□□ 0.9
SHKBP1-208ENST00000595726 NRAPQ86VF7 1730 aa20.7■□□□□ 0.9
SHKBP1-208ENST00000595726 APBA3O96018 575 aa20.7■□□□□ 0.9
SHKBP1-208ENST00000595726 SIRT1Q96EB6 747 aa20.69■□□□□ 0.9
SHKBP1-208ENST00000595726 KNDC1Q76NI1 1749 aa20.68■□□□□ 0.9
SHKBP1-208ENST00000595726 PRAM1Q96QH2 718 aa20.68■□□□□ 0.9
SHKBP1-208ENST00000595726 TNS1Q9HBL0 1735 aaKnown RBP20.67■□□□□ 0.9
SHKBP1-208ENST00000595726 ANKRD30BQ9BXX2 1392 aa20.67■□□□□ 0.9
SHKBP1-208ENST00000595726 SPATA31E1Q6ZUB1 1445 aa20.67■□□□□ 0.9
SHKBP1-208ENST00000595726 IFT172Q9UG01 1749 aa20.67■□□□□ 0.9
SHKBP1-208ENST00000595726 PIK3C2GO75747 1445 aa20.66■□□□□ 0.9
SHKBP1-208ENST00000595726 CFAP70Q5T0N1 1121 aa20.65■□□□□ 0.9
SHKBP1-208ENST00000595726 FAM196AQ6ZSG2 479 aa20.64■□□□□ 0.89
SHKBP1-208ENST00000595726 C14orf93Q9H972 538 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-208ENST00000595726 COL14A1Q05707 1796 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-208ENST00000595726 THSD7AQ9UPZ6 1657 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms