RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 NISCHQ9Y2I1 1504 aa35.26■■■■□ 3.23
SHKBP1-208ENST00000595726 ABCC9O60706 1549 aa32.67■■■□□ 2.82
SHKBP1-208ENST00000595726 CCDC180Q9P1Z9 1646 aa31.77■■■□□ 2.68
SHKBP1-208ENST00000595726 DNAJC5BQ9UF47 199 aa31.38■■■□□ 2.61
SHKBP1-208ENST00000595726 RB1CC1Q8TDY2 1594 aa30.65■■■□□ 2.5
SHKBP1-208ENST00000595726 PABPN1Q86U42 306 aaKnown RBP eCLIP30.42■■■□□ 2.46
SHKBP1-208ENST00000595726 DCAF8L2P0C7V8 631 aa30.28■■■□□ 2.44
SHKBP1-208ENST00000595726 NACADO15069 1562 aa30.27■■■□□ 2.44
SHKBP1-208ENST00000595726 UNC13AQ9UPW8 1703 aa29.95■■■□□ 2.38
SHKBP1-208ENST00000595726 BICRAQ9NZM4 1560 aa29.86■■■□□ 2.37
SHKBP1-208ENST00000595726 MYO15BQ96JP2 1530 aa29.57■■■□□ 2.32
SHKBP1-208ENST00000595726 CECR2Q9BXF3 1484 aa29.45■■■□□ 2.31
SHKBP1-208ENST00000595726 CC2D2AQ9P2K1 1620 aa29.39■■■□□ 2.3
SHKBP1-208ENST00000595726 DNAJC5Q9H3Z4 198 aa29.2■■■□□ 2.26
SHKBP1-208ENST00000595726 SHROOM4Q9ULL8 1493 aa29.2■■■□□ 2.26
SHKBP1-208ENST00000595726 EIF4G1Q04637 1599 aaKnown RBP29.15■■■□□ 2.26
SHKBP1-208ENST00000595726 SCRIBQ14160 1630 aa29.08■■■□□ 2.25
SHKBP1-208ENST00000595726 ZCCHC6Q5VYS8 1495 aaKnown RBP29.04■■■□□ 2.24
SHKBP1-208ENST00000595726 DCAF1Q9Y4B6 1507 aa28.98■■■□□ 2.23
SHKBP1-208ENST00000595726 CUX2O14529 1486 aa28.29■■■□□ 2.12
SHKBP1-208ENST00000595726 ERCC6Q03468 1493 aa28.2■■■□□ 2.1
SHKBP1-208ENST00000595726 NCAPD3P42695 1498 aa28.02■■■□□ 2.08
SHKBP1-208ENST00000595726 NESP48681 1621 aa27.89■■■□□ 2.06
SHKBP1-208ENST00000595726 ATAD2BQ9ULI0 1458 aa27.87■■■□□ 2.05
SHKBP1-208ENST00000595726 TRIM41Q8WV44 630 aa27.72■■■□□ 2.03
SHKBP1-208ENST00000595726 HMGXB3Q12766 1538 aa27.67■■■□□ 2.02
SHKBP1-208ENST00000595726 SMARCA2P51531 1590 aa27.66■■■□□ 2.02
SHKBP1-208ENST00000595726 SMARCA4P51532 1647 aa27.61■■■□□ 2.01
SHKBP1-208ENST00000595726 THOC2Q8NI27 1593 aaKnown RBP27.6■■■□□ 2.01
SHKBP1-208ENST00000595726 BAZ1BQ9UIG0 1483 aaKnown RBP27.53■■■□□ 2
SHKBP1-208ENST00000595726 LAMC3Q9Y6N6 1575 aa27.43■■□□□ 1.98
SHKBP1-208ENST00000595726 KIF21AQ7Z4S6 1674 aa27.39■■□□□ 1.97
SHKBP1-208ENST00000595726 BAZ1AQ9NRL2 1556 aaPredicted RBP27.35■■□□□ 1.97
SHKBP1-208ENST00000595726 PDS5BQ9NTI5 1447 aa27.35■■□□□ 1.97
SHKBP1-208ENST00000595726 PEG3Q9GZU2 1588 aa27.3■■□□□ 1.96
SHKBP1-208ENST00000595726 MROH2BQ7Z745 1585 aa27.22■■□□□ 1.95
SHKBP1-208ENST00000595726 CADPSQ9ULU8 1353 aa27.17■■□□□ 1.94
SHKBP1-208ENST00000595726 MRC2Q9UBG0 1479 aa27.15■■□□□ 1.94
SHKBP1-208ENST00000595726 WDR62O43379 1518 aa27.07■■□□□ 1.92
SHKBP1-208ENST00000595726 OSCARQ8IYS5 282 aa27.03■■□□□ 1.92
SHKBP1-208ENST00000595726 CEP164Q9UPV0 1460 aa26.91■■□□□ 1.9
SHKBP1-208ENST00000595726 FANCD2Q9BXW9 1451 aa26.86■■□□□ 1.89
SHKBP1-208ENST00000595726 WIZO95785 1651 aa26.83■■□□□ 1.89
SHKBP1-208ENST00000595726 URB2Q14146 1524 aaKnown RBP26.7■■□□□ 1.86
SHKBP1-208ENST00000595726 CFTRP13569 1480 aa26.68■■□□□ 1.86
SHKBP1-208ENST00000595726 RIMBP3CA6NJZ7 1639 aa26.67■■□□□ 1.86
SHKBP1-208ENST00000595726 RIMBP3BA6NNM3 1639 aa26.67■■□□□ 1.86
SHKBP1-208ENST00000595726 RIMBP3Q9UFD9 1639 aa26.67■■□□□ 1.86
SHKBP1-208ENST00000595726 ARHGEF11O15085 1522 aa26.53■■□□□ 1.84
SHKBP1-208ENST00000595726 CYB5RLQ6IPT4 315 aa26.52■■□□□ 1.84
SHKBP1-208ENST00000595726 ZNF608Q9ULD9 1512 aaPredicted RBP26.52■■□□□ 1.84
SHKBP1-208ENST00000595726 TRHP20396 242 aaPredicted RBP26.43■■□□□ 1.82
SHKBP1-208ENST00000595726 RSF1Q96T23 1441 aaPredicted RBP26.41■■□□□ 1.82
SHKBP1-208ENST00000595726 IFT140Q96RY7 1462 aa26.39■■□□□ 1.82
SHKBP1-208ENST00000595726 TOP2AP11388 1531 aaKnown RBP26.38■■□□□ 1.81
SHKBP1-208ENST00000595726 TOPBP1Q92547 1522 aa26.26■■□□□ 1.79
SHKBP1-208ENST00000595726 ARAP1Q96P48 1450 aa26.24■■□□□ 1.79
SHKBP1-208ENST00000595726 FBLN2P98095 1184 aa26.23■■□□□ 1.79
SHKBP1-208ENST00000595726 EIF4G3O43432 1585 aaKnown RBP26.22■■□□□ 1.79
SHKBP1-208ENST00000595726 AQRO60306 1485 aaKnown RBP eCLIP26.21■■□□□ 1.79
SHKBP1-208ENST00000595726 PRDM2Q13029 1718 aa26.19■■□□□ 1.78
SHKBP1-208ENST00000595726 CCDC88BA6NC98 1476 aa26.19■■□□□ 1.78
SHKBP1-208ENST00000595726 CHD1O14646 1710 aa26.14■■□□□ 1.78
SHKBP1-208ENST00000595726 AEBP2Q6ZN18 517 aaPredicted RBP26.12■■□□□ 1.77
SHKBP1-208ENST00000595726 ABCC8Q09428 1581 aa26.07■■□□□ 1.76
SHKBP1-208ENST00000595726 TARBP1Q13395 1621 aaKnown RBP26.06■■□□□ 1.76
SHKBP1-208ENST00000595726 DNMBPQ6XZF7 1577 aa26.05■■□□□ 1.76
SHKBP1-208ENST00000595726 TDRD9Q8NDG6 1382 aaKnown RBP25.97■■□□□ 1.75
SHKBP1-208ENST00000595726 POLA1P09884 1462 aaPredicted RBP25.96■■□□□ 1.75
SHKBP1-208ENST00000595726 RAD54L2Q9Y4B4 1467 aa25.95■■□□□ 1.74
SHKBP1-208ENST00000595726 SOGA1O94964 1423 aa25.88■■□□□ 1.73
SHKBP1-208ENST00000595726 CHMP7Q8WUX9 453 aaPredicted RBP25.87■■□□□ 1.73
SHKBP1-208ENST00000595726 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
SHKBP1-208ENST00000595726 CLASP1Q7Z460 1538 aa25.84■■□□□ 1.73
SHKBP1-208ENST00000595726 SYNJ1O43426 1573 aa25.73■■□□□ 1.71
SHKBP1-208ENST00000595726 FGD5Q6ZNL6 1462 aa25.71■■□□□ 1.71
SHKBP1-208ENST00000595726 MAGI1Q96QZ7 1491 aaPredicted RBP25.68■■□□□ 1.7
SHKBP1-208ENST00000595726 GAPVD1Q14C86 1478 aa25.67■■□□□ 1.7
SHKBP1-208ENST00000595726 GRIN2BQ13224 1484 aa25.66■■□□□ 1.7
SHKBP1-208ENST00000595726 SYNJ2O15056 1496 aa25.65■■□□□ 1.7
SHKBP1-208ENST00000595726 WDR97A6NE52 1622 aa25.59■■□□□ 1.69
SHKBP1-208ENST00000595726 CUX1P39880 1505 aa25.59■■□□□ 1.69
SHKBP1-208ENST00000595726 ERCC6L2Q5T890 1561 aa25.5■■□□□ 1.67
SHKBP1-208ENST00000595726 PBRM1Q86U86 1689 aa25.44■■□□□ 1.66
SHKBP1-208ENST00000595726 GRIN2AQ12879 1464 aa25.34■■□□□ 1.65
SHKBP1-208ENST00000595726 ABCA10Q8WWZ4 1543 aa25.33■■□□□ 1.65
SHKBP1-208ENST00000595726 ABCA5Q8WWZ7 1642 aa25.33■■□□□ 1.65
SHKBP1-208ENST00000595726 CEP170Q5SW79 1584 aa25.32■■□□□ 1.64
SHKBP1-208ENST00000595726 NUP160Q12769 1436 aa25.27■■□□□ 1.64
SHKBP1-208ENST00000595726 KIF13AQ9H1H9 1805 aa25.23■■□□□ 1.63
SHKBP1-208ENST00000595726 ADAMTS12P58397 1594 aa25.19■■□□□ 1.62
SHKBP1-208ENST00000595726 FAM69CQ0P6D2 419 aa25.18■■□□□ 1.62
SHKBP1-208ENST00000595726 SHROOM2Q13796 1616 aa25.17■■□□□ 1.62
SHKBP1-208ENST00000595726 FHAD1B1AJZ9 1412 aa25.14■■□□□ 1.62
SHKBP1-208ENST00000595726 PRG4Q92954 1404 aaPredicted RBP25.14■■□□□ 1.62
SHKBP1-208ENST00000595726 WRNQ14191 1432 aaPredicted RBP eCLIP25.13■■□□□ 1.61
SHKBP1-208ENST00000595726 KDM4FA0A1W2PPD8 638 aa25.13■■□□□ 1.61
SHKBP1-208ENST00000595726 JPH4Q96JJ6 628 aa25.12■■□□□ 1.61
SHKBP1-208ENST00000595726 ILDR1Q86SU0 546 aaPredicted RBP25.08■■□□□ 1.61
SHKBP1-208ENST00000595726 ABCC10Q5T3U5 1492 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms