RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 ESF1Q9H501 851 aaKnown RBP12□□□□□ -0.49
SMAD4-206ENST00000588860 VGFO15240 615 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-206ENST00000588860 NUTM2DQ5VT03 806 aaPredicted RBP11.99□□□□□ -0.49
SMAD4-206ENST00000588860 C14orf93Q9H972 538 aaKnown RBP11.99□□□□□ -0.49
SMAD4-206ENST00000588860 GTF3C3Q9Y5Q9 886 aa11.99□□□□□ -0.49
SMAD4-206ENST00000588860 ZFYVE9O95405 1425 aa11.99□□□□□ -0.49
SMAD4-206ENST00000588860 SETD1BQ9UPS6 1966 aaKnown RBP11.98□□□□□ -0.49
SMAD4-206ENST00000588860 CCDC184Q52MB2 194 aa11.98□□□□□ -0.49
SMAD4-206ENST00000588860 CDCA8Q53HL2 280 aa11.98□□□□□ -0.49
SMAD4-206ENST00000588860 MRS2Q9HD23 443 aa11.98□□□□□ -0.49
SMAD4-206ENST00000588860 SETD1AO15047 1707 aaKnown RBP11.97□□□□□ -0.49
SMAD4-206ENST00000588860 UBR1Q8IWV7 1749 aa11.97□□□□□ -0.49
SMAD4-206ENST00000588860 C3P01024 1663 aa11.97□□□□□ -0.49
SMAD4-206ENST00000588860 ASXL1Q8IXJ9 1541 aa11.97□□□□□ -0.49
SMAD4-206ENST00000588860 STAG3Q9UJ98 1225 aa11.97□□□□□ -0.49
SMAD4-206ENST00000588860 A2ML1A8K2U0 1454 aa11.96□□□□□ -0.49
SMAD4-206ENST00000588860 ZMYM3Q14202 1370 aa11.96□□□□□ -0.49
SMAD4-206ENST00000588860 KTN1Q86UP2 1357 aaKnown RBP11.96□□□□□ -0.49
SMAD4-206ENST00000588860 HSPA1LP34931 641 aa11.96□□□□□ -0.49
SMAD4-206ENST00000588860 ALKQ9UM73 1620 aa11.96□□□□□ -0.5
SMAD4-206ENST00000588860 CENPJQ9HC77 1338 aaPredicted RBP11.95□□□□□ -0.5
SMAD4-206ENST00000588860 PRKAR2AP13861 404 aaKnown RBP11.95□□□□□ -0.5
SMAD4-206ENST00000588860 SPDYE1Q8NFV5 336 aaPredicted RBP11.95□□□□□ -0.5
SMAD4-206ENST00000588860 TRAK1Q9UPV9 953 aa11.95□□□□□ -0.5
SMAD4-206ENST00000588860 SBNO2Q9Y2G9 1366 aa11.94□□□□□ -0.5
SMAD4-206ENST00000588860 SLC24A1O60721 1099 aa11.94□□□□□ -0.5
SMAD4-206ENST00000588860 RALBP1Q15311 655 aa11.94□□□□□ -0.5
SMAD4-206ENST00000588860 TMEM132EQ6IEE7 984 aa11.94□□□□□ -0.5
SMAD4-206ENST00000588860 PANK3Q9H999 370 aa11.94□□□□□ -0.5
SMAD4-206ENST00000588860 RIMS2Q9UQ26 1411 aa11.94□□□□□ -0.5
SMAD4-206ENST00000588860 TNRQ92752 1358 aa11.93□□□□□ -0.5
SMAD4-206ENST00000588860 FAM9BQ8IZU0 186 aa11.93□□□□□ -0.5
SMAD4-206ENST00000588860 NRXN3Q9Y4C0 1643 aa11.93□□□□□ -0.5
SMAD4-206ENST00000588860 PARD3Q8TEW0 1356 aa11.92□□□□□ -0.5
SMAD4-206ENST00000588860 MYBBP1AQ9BQG0 1328 aaKnown RBP11.92□□□□□ -0.5
SMAD4-206ENST00000588860 HNRNPUQ00839 825 aaKnown RBP eCLIP11.92□□□□□ -0.5
SMAD4-206ENST00000588860 PER1O15534 1290 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-206ENST00000588860 CLEC11AQ9Y240 323 aa11.91□□□□□ -0.5
SMAD4-206ENST00000588860 BRD4O60885 1362 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-206ENST00000588860 ZNF335Q9H4Z2 1342 aaPredicted RBP11.9□□□□□ -0.5
SMAD4-206ENST00000588860 KNDC1Q76NI1 1749 aa11.9□□□□□ -0.5
SMAD4-206ENST00000588860 TULP4Q9NRJ4 1543 aa11.9□□□□□ -0.5
SMAD4-206ENST00000588860 YTHDC2Q9H6S0 1430 aaKnown RBP11.89□□□□□ -0.51
SMAD4-206ENST00000588860 C19orf67A6NJJ6 358 aa11.89□□□□□ -0.51
SMAD4-206ENST00000588860 PIP4K2BP78356 416 aa11.89□□□□□ -0.51
SMAD4-206ENST00000588860 CC2D1BQ5T0F9 858 aaKnown RBP11.89□□□□□ -0.51
SMAD4-206ENST00000588860 TMC1Q8TDI8 760 aa11.88□□□□□ -0.51
SMAD4-206ENST00000588860 STK26Q9P289 416 aa11.87□□□□□ -0.51
SMAD4-206ENST00000588860 KNSTRNQ9Y448 316 aa11.87□□□□□ -0.51
SMAD4-206ENST00000588860 NLRP1Q9C000 1473 aa11.87□□□□□ -0.51
SMAD4-206ENST00000588860 DLC1Q96QB1 1528 aa11.86□□□□□ -0.51
SMAD4-206ENST00000588860 USP32Q8NFA0 1604 aa11.86□□□□□ -0.51
SMAD4-206ENST00000588860 NLRP13Q86W25 1043 aa11.86□□□□□ -0.51
SMAD4-206ENST00000588860 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.86□□□□□ -0.51
SMAD4-206ENST00000588860 EVC2Q86UK5 1308 aa11.86□□□□□ -0.51
SMAD4-206ENST00000588860 TOM1O60784 492 aa11.85□□□□□ -0.51
SMAD4-206ENST00000588860 ZNF692Q9BU19 519 aaPredicted RBP11.85□□□□□ -0.51
SMAD4-206ENST00000588860 SSUH2Q9Y2M2 353 aa11.85□□□□□ -0.51
SMAD4-206ENST00000588860 NCKAP5LQ9HCH0 1330 aa11.85□□□□□ -0.51
SMAD4-206ENST00000588860 MKRN4PQ13434 485 aaPredicted RBP11.84□□□□□ -0.51
SMAD4-206ENST00000588860 NPC1L1Q9UHC9 1359 aa11.83□□□□□ -0.52
SMAD4-206ENST00000588860 SAFB2Q14151 953 aaKnown RBP eCLIP11.83□□□□□ -0.52
SMAD4-206ENST00000588860 AMER1Q5JTC6 1135 aaPredicted RBP11.83□□□□□ -0.52
SMAD4-206ENST00000588860 PNISRQ8TF01 805 aaKnown RBP11.83□□□□□ -0.52
SMAD4-206ENST00000588860 POGKQ9P215 609 aa11.83□□□□□ -0.52
SMAD4-206ENST00000588860 KIF20BQ96Q89 1820 aa11.83□□□□□ -0.52
SMAD4-206ENST00000588860 ZBED9Q6R2W3 1325 aa11.83□□□□□ -0.52
SMAD4-206ENST00000588860 ANKRD26Q9UPS8 1709 aa11.83□□□□□ -0.52
SMAD4-206ENST00000588860 LRPPRCP42704 1394 aaKnown RBP11.82□□□□□ -0.52
SMAD4-206ENST00000588860 TMEM2Q9UHN6 1383 aa11.82□□□□□ -0.52
SMAD4-206ENST00000588860 HDGFP51858 240 aaKnown RBP11.82□□□□□ -0.52
SMAD4-206ENST00000588860 PRAM1Q96QH2 718 aa11.82□□□□□ -0.52
SMAD4-206ENST00000588860 NSD3Q9BZ95 1437 aa11.81□□□□□ -0.52
SMAD4-206ENST00000588860 PUS7Q96PZ0 661 aaKnown RBP11.81□□□□□ -0.52
SMAD4-206ENST00000588860 RGS17Q9UGC6 210 aaPredicted RBP11.81□□□□□ -0.52
SMAD4-206ENST00000588860 MINK1Q8N4C8 1332 aaPredicted RBP11.81□□□□□ -0.52
SMAD4-206ENST00000588860 CPS1P31327 1500 aa11.81□□□□□ -0.52
SMAD4-206ENST00000588860 BCANQ96GW7 911 aa11.8□□□□□ -0.52
SMAD4-206ENST00000588860 CARD14Q9BXL6 1004 aa11.8□□□□□ -0.52
SMAD4-206ENST00000588860 ZNF142P52746 1687 aaPredicted RBP11.8□□□□□ -0.52
SMAD4-206ENST00000588860 GABBR2O75899 941 aa11.79□□□□□ -0.52
SMAD4-206ENST00000588860 PPP2R1AP30153 589 aa11.79□□□□□ -0.52
SMAD4-206ENST00000588860 CABP2Q9NPB3 220 aa11.79□□□□□ -0.52
SMAD4-206ENST00000588860 ITSN1Q15811 1721 aa11.79□□□□□ -0.52
SMAD4-206ENST00000588860 SLIT1O75093 1534 aa11.79□□□□□ -0.52
SMAD4-206ENST00000588860 CEP170BQ9Y4F5 1589 aaPredicted RBP11.79□□□□□ -0.52
SMAD4-206ENST00000588860 METP08581 1390 aa11.79□□□□□ -0.52
SMAD4-206ENST00000588860 SRPK2P78362 688 aaKnown RBP11.78□□□□□ -0.52
SMAD4-206ENST00000588860 SLC12A5Q9H2X9 1139 aa11.78□□□□□ -0.52
SMAD4-206ENST00000588860 ABCC11Q96J66 1382 aa11.78□□□□□ -0.52
SMAD4-206ENST00000588860 PLEKHG1Q9ULL1 1385 aa11.78□□□□□ -0.52
SMAD4-206ENST00000588860 NINLQ9Y2I6 1382 aa11.78□□□□□ -0.52
SMAD4-206ENST00000588860 ARHGAP23Q9P227 1491 aa11.77□□□□□ -0.52
SMAD4-206ENST00000588860 ATAD2Q6PL18 1390 aa11.77□□□□□ -0.53
SMAD4-206ENST00000588860 ANKRD36BQ8N2N9 1353 aa11.77□□□□□ -0.53
SMAD4-206ENST00000588860 PLEKHH1Q9ULM0 1364 aa11.77□□□□□ -0.53
SMAD4-206ENST00000588860 DIP2AQ14689 1571 aa11.76□□□□□ -0.53
SMAD4-206ENST00000588860 AKAP12Q02952 1782 aa11.76□□□□□ -0.53
SMAD4-206ENST00000588860 TECPR2O15040 1411 aa11.76□□□□□ -0.53
SMAD4-206ENST00000588860 BLMP54132 1417 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms