RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 GZF1Q9H116 711 aaPredicted RBP12.4□□□□□ -0.42
CCDC40-212ENST00000574799 CRBNQ96SW2 442 aa12.4□□□□□ -0.42
CCDC40-212ENST00000574799 BECN1Q14457 450 aa12.4□□□□□ -0.43
CCDC40-212ENST00000574799 CFAP70Q5T0N1 1121 aa12.39□□□□□ -0.43
CCDC40-212ENST00000574799 AGLP35573 1532 aa12.38□□□□□ -0.43
CCDC40-212ENST00000574799 SHPRHQ149N8 1683 aa12.37□□□□□ -0.43
CCDC40-212ENST00000574799 NRXN3Q9Y4C0 1643 aa12.37□□□□□ -0.43
CCDC40-212ENST00000574799 ARHGEF40Q8TER5 1519 aa12.37□□□□□ -0.43
CCDC40-212ENST00000574799 TULP4Q9NRJ4 1543 aa12.37□□□□□ -0.43
CCDC40-212ENST00000574799 FAM161AQ3B820 660 aa12.37□□□□□ -0.43
CCDC40-212ENST00000574799 KTN1Q86UP2 1357 aaKnown RBP12.36□□□□□ -0.43
CCDC40-212ENST00000574799 BRD4O60885 1362 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-212ENST00000574799 UPF2Q9HAU5 1272 aaKnown RBP12.36□□□□□ -0.43
CCDC40-212ENST00000574799 TRIM44Q96DX7 344 aaPredicted RBP12.35□□□□□ -0.43
CCDC40-212ENST00000574799 SPRYD3Q8NCJ5 442 aa12.35□□□□□ -0.43
CCDC40-212ENST00000574799 PANK3Q9H999 370 aa12.35□□□□□ -0.43
CCDC40-212ENST00000574799 POGKQ9P215 609 aa12.35□□□□□ -0.43
CCDC40-212ENST00000574799 SPATA31D1Q6ZQQ2 1576 aa12.35□□□□□ -0.43
CCDC40-212ENST00000574799 MYBBP1AQ9BQG0 1328 aaKnown RBP12.35□□□□□ -0.43
CCDC40-212ENST00000574799 GGT6Q6P531 493 aa12.35□□□□□ -0.43
CCDC40-212ENST00000574799 BLMP54132 1417 aaPredicted RBP12.34□□□□□ -0.43
CCDC40-212ENST00000574799 AMER1Q5JTC6 1135 aaPredicted RBP12.34□□□□□ -0.43
CCDC40-212ENST00000574799 USP32Q8NFA0 1604 aa12.34□□□□□ -0.43
CCDC40-212ENST00000574799 CANXP27824 592 aaKnown RBP12.34□□□□□ -0.43
CCDC40-212ENST00000574799 CDCA7LQ96GN5 454 aa12.34□□□□□ -0.43
CCDC40-212ENST00000574799 GOLGA6L3A6NEY3 463 aa12.33□□□□□ -0.43
CCDC40-212ENST00000574799 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.33□□□□□ -0.43
CCDC40-212ENST00000574799 STAC3Q96MF2 364 aa12.33□□□□□ -0.43
CCDC40-212ENST00000574799 SBNO2Q9Y2G9 1366 aa12.33□□□□□ -0.44
CCDC40-212ENST00000574799 RNF123Q5XPI4 1314 aa12.32□□□□□ -0.44
CCDC40-212ENST00000574799 PODXL2Q9NZ53 605 aa12.32□□□□□ -0.44
CCDC40-212ENST00000574799 PTPRMP28827 1452 aa12.32□□□□□ -0.44
CCDC40-212ENST00000574799 FAM69CQ0P6D2 419 aa12.31□□□□□ -0.44
CCDC40-212ENST00000574799 CARD14Q9BXL6 1004 aa12.31□□□□□ -0.44
CCDC40-212ENST00000574799 C14orf93Q9H972 538 aaKnown RBP12.31□□□□□ -0.44
CCDC40-212ENST00000574799 ZFYVE9O95405 1425 aa12.31□□□□□ -0.44
CCDC40-212ENST00000574799 PDE3BQ13370 1112 aa12.3□□□□□ -0.44
CCDC40-212ENST00000574799 RALBP1Q15311 655 aa12.3□□□□□ -0.44
CCDC40-212ENST00000574799 RRAGDQ9NQL2 400 aaPredicted RBP12.3□□□□□ -0.44
CCDC40-212ENST00000574799 TMF1P82094 1093 aa12.3□□□□□ -0.44
CCDC40-212ENST00000574799 IDI1Q13907 227 aa12.29□□□□□ -0.44
CCDC40-212ENST00000574799 CENPQQ7L2Z9 268 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-212ENST00000574799 CC2D1BQ5T0F9 858 aaKnown RBP12.29□□□□□ -0.44
CCDC40-212ENST00000574799 ALKQ9UM73 1620 aa12.28□□□□□ -0.44
CCDC40-212ENST00000574799 RRP9O43818 475 aaKnown RBP12.28□□□□□ -0.44
CCDC40-212ENST00000574799 FBXO31Q5XUX0 539 aaPredicted RBP12.27□□□□□ -0.44
CCDC40-212ENST00000574799 NPC1L1Q9UHC9 1359 aa12.27□□□□□ -0.45
CCDC40-212ENST00000574799 CD163L1Q9NR16 1453 aa12.26□□□□□ -0.45
CCDC40-212ENST00000574799 UBR1Q8IWV7 1749 aa12.26□□□□□ -0.45
CCDC40-212ENST00000574799 INSRP06213 1382 aa12.26□□□□□ -0.45
CCDC40-212ENST00000574799 TMEM132EQ6IEE7 984 aa12.26□□□□□ -0.45
CCDC40-212ENST00000574799 MYH16Q9H6N6 1097 aa12.26□□□□□ -0.45
CCDC40-212ENST00000574799 ANKRD26Q9UPS8 1709 aa12.26□□□□□ -0.45
CCDC40-212ENST00000574799 A2ML1A8K2U0 1454 aa12.26□□□□□ -0.45
CCDC40-212ENST00000574799 NLRP13Q86W25 1043 aa12.25□□□□□ -0.45
CCDC40-212ENST00000574799 WDR43Q15061 677 aaKnown RBP eCLIP12.25□□□□□ -0.45
CCDC40-212ENST00000574799 ANP32BQ92688 251 aaKnown RBP12.25□□□□□ -0.45
CCDC40-212ENST00000574799 ARID3AQ99856 593 aa12.25□□□□□ -0.45
CCDC40-212ENST00000574799 NUTM2DQ5VT03 806 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-212ENST00000574799 A0A0U1RQG5 324 aaPredicted RBP12.24□□□□□ -0.45
CCDC40-212ENST00000574799 RPGRIP1LQ68CZ1 1315 aa12.24□□□□□ -0.45
CCDC40-212ENST00000574799 C20orf194Q5TEA3 1177 aa12.24□□□□□ -0.45
CCDC40-212ENST00000574799 EIF3AQ14152 1382 aaKnown RBP12.24□□□□□ -0.45
CCDC40-212ENST00000574799 NLRP1Q9C000 1473 aa12.23□□□□□ -0.45
CCDC40-212ENST00000574799 PPP2R1AP30153 589 aa12.22□□□□□ -0.45
CCDC40-212ENST00000574799 KNDC1Q76NI1 1749 aa12.22□□□□□ -0.45
CCDC40-212ENST00000574799 ZNF521Q96K83 1311 aa12.2□□□□□ -0.46
CCDC40-212ENST00000574799 PLEKHH1Q9ULM0 1364 aa12.2□□□□□ -0.46
CCDC40-212ENST00000574799 TRAK1Q9UPV9 953 aa12.2□□□□□ -0.46
CCDC40-212ENST00000574799 PANK2Q9BZ23 570 aa12.19□□□□□ -0.46
CCDC40-212ENST00000574799 C3P01024 1663 aa12.19□□□□□ -0.46
CCDC40-212ENST00000574799 CENPJQ9HC77 1338 aaPredicted RBP12.19□□□□□ -0.46
CCDC40-212ENST00000574799 KIF20BQ96Q89 1820 aa12.19□□□□□ -0.46
CCDC40-212ENST00000574799 C8orf34Q49A92 452 aa12.18□□□□□ -0.46
CCDC40-212ENST00000574799 ADAMTS8Q9UP79 889 aa12.18□□□□□ -0.46
CCDC40-212ENST00000574799 XRCC6P12956 609 aaKnown RBP eCLIP12.17□□□□□ -0.46
CCDC40-212ENST00000574799 SLC52A1Q9NWF4 448 aa12.17□□□□□ -0.46
CCDC40-212ENST00000574799 PLEKHG5O94827 1062 aa12.17□□□□□ -0.46
CCDC40-212ENST00000574799 YTHDC2Q9H6S0 1430 aaKnown RBP12.17□□□□□ -0.46
CCDC40-212ENST00000574799 IQSEC2Q5JU85 1478 aa12.17□□□□□ -0.46
CCDC40-212ENST00000574799 DLC1Q96QB1 1528 aa12.16□□□□□ -0.46
CCDC40-212ENST00000574799 CHGAP10645 457 aaKnown RBP12.16□□□□□ -0.46
CCDC40-212ENST00000574799 CLCN1P35523 988 aa12.16□□□□□ -0.46
CCDC40-212ENST00000574799 NSD3Q9BZ95 1437 aa12.16□□□□□ -0.46
CCDC40-212ENST00000574799 ESPNB1AK53 854 aa12.16□□□□□ -0.46
CCDC40-212ENST00000574799 SLC12A5Q9H2X9 1139 aa12.16□□□□□ -0.46
CCDC40-212ENST00000574799 COL3A1P02461 1466 aaPredicted RBP12.15□□□□□ -0.46
CCDC40-212ENST00000574799 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.14□□□□□ -0.47
CCDC40-212ENST00000574799 MSNP26038 577 aaKnown RBP12.14□□□□□ -0.47
CCDC40-212ENST00000574799 MRE11P49959 708 aa12.14□□□□□ -0.47
CCDC40-212ENST00000574799 AKAP12Q02952 1782 aa12.14□□□□□ -0.47
CCDC40-212ENST00000574799 TRAK2O60296 914 aa12.14□□□□□ -0.47
CCDC40-212ENST00000574799 GOLGA2Q08379 1002 aa12.14□□□□□ -0.47
CCDC40-212ENST00000574799 MON2Q7Z3U7 1717 aa12.13□□□□□ -0.47
CCDC40-212ENST00000574799 TOPAZ1Q8N9V7 1692 aa12.13□□□□□ -0.47
CCDC40-212ENST00000574799 FAM13BQ9NYF5 915 aa12.13□□□□□ -0.47
CCDC40-212ENST00000574799 ADGRB2O60241 1585 aa12.13□□□□□ -0.47
CCDC40-212ENST00000574799 RBM10P98175 930 aaKnown RBP12.13□□□□□ -0.47
CCDC40-212ENST00000574799 ZMYM3Q14202 1370 aa12.12□□□□□ -0.47
CCDC40-212ENST00000574799 CPS1P31327 1500 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms