RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 MROH1Q8NDA8 1641 aa20.77■□□□□ 0.92
LINC00554-201ENST00000564841 TNNT2P45379 298 aaPredicted RBP20.77■□□□□ 0.91
LINC00554-201ENST00000564841 ZMYM4Q5VZL5 1548 aa20.77■□□□□ 0.91
LINC00554-201ENST00000564841 GPRASP1Q5JY77 1395 aa20.77■□□□□ 0.91
LINC00554-201ENST00000564841 TRAK2O60296 914 aa20.76■□□□□ 0.91
LINC00554-201ENST00000564841 DMRT2Q9Y5R5 561 aa20.76■□□□□ 0.91
LINC00554-201ENST00000564841 ESPNB1AK53 854 aa20.75■□□□□ 0.91
LINC00554-201ENST00000564841 NOS1P29475 1434 aa20.75■□□□□ 0.91
LINC00554-201ENST00000564841 MLH3Q9UHC1 1453 aa20.75■□□□□ 0.91
LINC00554-201ENST00000564841 HECW2Q9P2P5 1572 aa20.75■□□□□ 0.91
LINC00554-201ENST00000564841 DEPDC5O75140 1603 aa20.75■□□□□ 0.91
LINC00554-201ENST00000564841 STK26Q9P289 416 aa20.74■□□□□ 0.91
LINC00554-201ENST00000564841 SLFN5Q08AF3 891 aa20.74■□□□□ 0.91
LINC00554-201ENST00000564841 STAG3Q9UJ98 1225 aa20.73■□□□□ 0.91
LINC00554-201ENST00000564841 PPRC1Q5VV67 1664 aaKnown RBP20.73■□□□□ 0.91
LINC00554-201ENST00000564841 ABCA6Q8N139 1617 aa20.73■□□□□ 0.91
LINC00554-201ENST00000564841 FRMPD1Q5SYB0 1578 aa20.73■□□□□ 0.91
LINC00554-201ENST00000564841 PPP2R1AP30153 589 aa20.73■□□□□ 0.91
LINC00554-201ENST00000564841 IDI1Q13907 227 aa20.73■□□□□ 0.91
LINC00554-201ENST00000564841 MYH16Q9H6N6 1097 aa20.73■□□□□ 0.91
LINC00554-201ENST00000564841 NEUROD2Q15784 382 aa20.72■□□□□ 0.91
LINC00554-201ENST00000564841 NLRP1Q9C000 1473 aa20.72■□□□□ 0.91
LINC00554-201ENST00000564841 NEO1Q92859 1461 aa20.71■□□□□ 0.91
LINC00554-201ENST00000564841 PODXL2Q9NZ53 605 aa20.71■□□□□ 0.91
LINC00554-201ENST00000564841 ZNF521Q96K83 1311 aa20.71■□□□□ 0.91
LINC00554-201ENST00000564841 GRPEL1Q9HAV7 217 aa20.71■□□□□ 0.91
LINC00554-201ENST00000564841 EFCAB6Q5THR3 1501 aa20.71■□□□□ 0.91
LINC00554-201ENST00000564841 APAF1O14727 1248 aa20.7■□□□□ 0.9
LINC00554-201ENST00000564841 TNNQ9UQP3 1299 aa20.7■□□□□ 0.9
LINC00554-201ENST00000564841 TBC1D32Q96NH3 1257 aa20.7■□□□□ 0.9
LINC00554-201ENST00000564841 VWDEQ8N2E2 1590 aa20.69■□□□□ 0.9
LINC00554-201ENST00000564841 GAS2L3Q86XJ1 694 aa20.68■□□□□ 0.9
LINC00554-201ENST00000564841 CFAP74Q9C0B2 1584 aa20.68■□□□□ 0.9
LINC00554-201ENST00000564841 COL17A1Q9UMD9 1497 aaPredicted RBP20.68■□□□□ 0.9
LINC00554-201ENST00000564841 MRE11P49959 708 aa20.68■□□□□ 0.9
LINC00554-201ENST00000564841 MADDQ8WXG6 1647 aa20.68■□□□□ 0.9
LINC00554-201ENST00000564841 EIF2AK4Q9P2K8 1649 aaKnown RBP20.68■□□□□ 0.9
LINC00554-201ENST00000564841 RBM10P98175 930 aaKnown RBP20.67■□□□□ 0.9
LINC00554-201ENST00000564841 CANXP27824 592 aaKnown RBP20.67■□□□□ 0.9
LINC00554-201ENST00000564841 CLUAP1Q96AJ1 413 aa20.67■□□□□ 0.9
LINC00554-201ENST00000564841 RNF17Q9BXT8 1623 aaKnown RBP20.66■□□□□ 0.9
LINC00554-201ENST00000564841 ARID3AQ99856 593 aa20.66■□□□□ 0.9
LINC00554-201ENST00000564841 SCAF11Q99590 1463 aaKnown RBP20.65■□□□□ 0.9
LINC00554-201ENST00000564841 UPF2Q9HAU5 1272 aaKnown RBP20.65■□□□□ 0.9
LINC00554-201ENST00000564841 EIF3AQ14152 1382 aaKnown RBP20.65■□□□□ 0.9
LINC00554-201ENST00000564841 RRP7AQ9Y3A4 280 aaKnown RBP20.64■□□□□ 0.89
LINC00554-201ENST00000564841 PCDHB15Q9Y5E8 787 aa20.64■□□□□ 0.89
LINC00554-201ENST00000564841 TRIM44Q96DX7 344 aaPredicted RBP20.63■□□□□ 0.89
LINC00554-201ENST00000564841 AMER1Q5JTC6 1135 aaPredicted RBP20.63■□□□□ 0.89
LINC00554-201ENST00000564841 DIP2CQ9Y2E4 1556 aa20.63■□□□□ 0.89
LINC00554-201ENST00000564841 ABCC3O15438 1527 aa20.63■□□□□ 0.89
LINC00554-201ENST00000564841 MAPK8IP3Q9UPT6 1336 aa20.62■□□□□ 0.89
LINC00554-201ENST00000564841 MFAP1P55081 439 aaKnown RBP20.62■□□□□ 0.89
LINC00554-201ENST00000564841 BCL2L13Q9BXK5 485 aa20.62■□□□□ 0.89
LINC00554-201ENST00000564841 PDZRN3Q9UPQ7 1066 aa20.62■□□□□ 0.89
LINC00554-201ENST00000564841 KIAA1211Q6ZU35 1233 aa20.62■□□□□ 0.89
LINC00554-201ENST00000564841 KIF1BO60333 1816 aa20.62■□□□□ 0.89
LINC00554-201ENST00000564841 CDCA8Q53HL2 280 aa20.62■□□□□ 0.89
LINC00554-201ENST00000564841 ESF1Q9H501 851 aaKnown RBP20.61■□□□□ 0.89
LINC00554-201ENST00000564841 MROH2AA6NES4 1674 aa20.61■□□□□ 0.89
LINC00554-201ENST00000564841 STAC3Q96MF2 364 aa20.61■□□□□ 0.89
LINC00554-201ENST00000564841 CENPJQ9HC77 1338 aaPredicted RBP20.6■□□□□ 0.89
LINC00554-201ENST00000564841 TRMT2AQ8IZ69 625 aaKnown RBP20.6■□□□□ 0.89
LINC00554-201ENST00000564841 A0A0U1RQG5 324 aaPredicted RBP20.59■□□□□ 0.89
LINC00554-201ENST00000564841 CHMP5Q9NZZ3 219 aa20.59■□□□□ 0.89
LINC00554-201ENST00000564841 RLBP1P12271 317 aa20.59■□□□□ 0.89
LINC00554-201ENST00000564841 SLC12A5Q9H2X9 1139 aa20.59■□□□□ 0.89
LINC00554-201ENST00000564841 MAP3K4Q9Y6R4 1608 aa20.58■□□□□ 0.89
LINC00554-201ENST00000564841 VGFO15240 615 aaPredicted RBP20.58■□□□□ 0.88
LINC00554-201ENST00000564841 C14orf93Q9H972 538 aaKnown RBP20.57■□□□□ 0.88
LINC00554-201ENST00000564841 RICTORQ6R327 1708 aa20.56■□□□□ 0.88
LINC00554-201ENST00000564841 PDCL3Q9H2J4 239 aa20.56■□□□□ 0.88
LINC00554-201ENST00000564841 FOXD4L1Q9NU39 408 aa20.56■□□□□ 0.88
LINC00554-201ENST00000564841 CGNL1Q0VF96 1302 aa20.55■□□□□ 0.88
LINC00554-201ENST00000564841 DIP2BQ9P265 1576 aa20.55■□□□□ 0.88
LINC00554-201ENST00000564841 NKTRP30414 1462 aaKnown RBP20.55■□□□□ 0.88
LINC00554-201ENST00000564841 C22orf23Q9BZE7 217 aa20.55■□□□□ 0.88
LINC00554-201ENST00000564841 TRHP20396 242 aaPredicted RBP20.54■□□□□ 0.88
LINC00554-201ENST00000564841 CABP2Q9NPB3 220 aa20.54■□□□□ 0.88
LINC00554-201ENST00000564841 INSRP06213 1382 aa20.54■□□□□ 0.88
LINC00554-201ENST00000564841 CARD14Q9BXL6 1004 aa20.53■□□□□ 0.88
LINC00554-201ENST00000564841 LMTK2Q8IWU2 1503 aa20.53■□□□□ 0.88
LINC00554-201ENST00000564841 FAM13BQ9NYF5 915 aa20.53■□□□□ 0.88
LINC00554-201ENST00000564841 PRDM4Q9UKN5 801 aa20.53■□□□□ 0.88
LINC00554-201ENST00000564841 MINK1Q8N4C8 1332 aaPredicted RBP20.52■□□□□ 0.88
LINC00554-201ENST00000564841 RIPK4P57078 832 aa20.52■□□□□ 0.88
LINC00554-201ENST00000564841 ZNF692Q9BU19 519 aaPredicted RBP20.52■□□□□ 0.88
LINC00554-201ENST00000564841 SIGLEC1Q9BZZ2 1709 aa20.52■□□□□ 0.88
LINC00554-201ENST00000564841 VIRMAQ69YN4 1812 aaKnown RBP20.52■□□□□ 0.87
LINC00554-201ENST00000564841 SLC52A1Q9NWF4 448 aa20.51■□□□□ 0.87
LINC00554-201ENST00000564841 TPM2P07951 284 aa20.51■□□□□ 0.87
LINC00554-201ENST00000564841 PDE3AQ14432 1141 aa20.51■□□□□ 0.87
LINC00554-201ENST00000564841 CAMSAP1Q5T5Y3 1602 aa20.51■□□□□ 0.87
LINC00554-201ENST00000564841 TNPO1Q92973 898 aaKnown RBP20.5■□□□□ 0.87
LINC00554-201ENST00000564841 E9PSI1 815 aa20.5■□□□□ 0.87
LINC00554-201ENST00000564841 SRPK2P78362 688 aaKnown RBP20.5■□□□□ 0.87
LINC00554-201ENST00000564841 IQGAP1P46940 1657 aa20.49■□□□□ 0.87
LINC00554-201ENST00000564841 LAMC1P11047 1609 aa20.49■□□□□ 0.87
LINC00554-201ENST00000564841 ADGRB3O60242 1522 aa20.49■□□□□ 0.87
LINC00554-201ENST00000564841 MYOM2P54296 1465 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms