RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TMC1Q8TDI8 760 aa17.29■□□□□ 0.36
CLK3-206ENST00000562078 POGKQ9P215 609 aa17.29■□□□□ 0.36
CLK3-206ENST00000562078 MYOM1P52179 1685 aa17.29■□□□□ 0.36
CLK3-206ENST00000562078 RALBP1Q15311 655 aa17.29■□□□□ 0.36
CLK3-206ENST00000562078 A0A0U1RQG5 324 aaPredicted RBP17.28■□□□□ 0.36
CLK3-206ENST00000562078 ADGRF5Q8IZF2 1346 aa17.28■□□□□ 0.36
CLK3-206ENST00000562078 PNNQ9H307 717 aaKnown RBP17.28■□□□□ 0.36
CLK3-206ENST00000562078 PARD3Q8TEW0 1356 aa17.28■□□□□ 0.36
CLK3-206ENST00000562078 KDM5AP29375 1690 aaKnown RBP17.28■□□□□ 0.36
CLK3-206ENST00000562078 TMEM131LA2VDJ0 1609 aa17.27■□□□□ 0.36
CLK3-206ENST00000562078 BRD4O60885 1362 aaPredicted RBP17.27■□□□□ 0.35
CLK3-206ENST00000562078 PER1O15534 1290 aaPredicted RBP17.27■□□□□ 0.35
CLK3-206ENST00000562078 EIF3AQ14152 1382 aaKnown RBP17.26■□□□□ 0.35
CLK3-206ENST00000562078 CFAP70Q5T0N1 1121 aa17.26■□□□□ 0.35
CLK3-206ENST00000562078 PNISRQ8TF01 805 aaKnown RBP17.26■□□□□ 0.35
CLK3-206ENST00000562078 PANK3Q9H999 370 aa17.26■□□□□ 0.35
CLK3-206ENST00000562078 STAG3Q9UJ98 1225 aa17.26■□□□□ 0.35
CLK3-206ENST00000562078 NRXN1Q9ULB1 1477 aa17.26■□□□□ 0.35
CLK3-206ENST00000562078 RPGRIP1LQ68CZ1 1315 aa17.25■□□□□ 0.35
CLK3-206ENST00000562078 NEXMIFQ5QGS0 1516 aa17.24■□□□□ 0.35
CLK3-206ENST00000562078 MYO3AQ8NEV4 1616 aa17.23■□□□□ 0.35
CLK3-206ENST00000562078 RBM10P98175 930 aaKnown RBP17.23■□□□□ 0.35
CLK3-206ENST00000562078 CC2D1BQ5T0F9 858 aaKnown RBP17.23■□□□□ 0.35
CLK3-206ENST00000562078 C3P01024 1663 aa17.23■□□□□ 0.35
CLK3-206ENST00000562078 NUTM2DQ5VT03 806 aaPredicted RBP17.22■□□□□ 0.35
CLK3-206ENST00000562078 ARXQ96QS3 562 aa17.22■□□□□ 0.35
CLK3-206ENST00000562078 LRPPRCP42704 1394 aaKnown RBP17.22■□□□□ 0.35
CLK3-206ENST00000562078 PLPPR3Q6T4P5 718 aa17.21■□□□□ 0.35
CLK3-206ENST00000562078 NLRP13Q86W25 1043 aa17.21■□□□□ 0.35
CLK3-206ENST00000562078 SETBP1Q9Y6X0 1596 aa17.21■□□□□ 0.35
CLK3-206ENST00000562078 TNRQ92752 1358 aa17.2■□□□□ 0.34
CLK3-206ENST00000562078 CLCN1P35523 988 aa17.2■□□□□ 0.34
CLK3-206ENST00000562078 RCAN3Q9UKA8 241 aa17.2■□□□□ 0.34
CLK3-206ENST00000562078 PIK3C2GO75747 1445 aa17.19■□□□□ 0.34
CLK3-206ENST00000562078 QRICH2Q9H0J4 1663 aa17.19■□□□□ 0.34
CLK3-206ENST00000562078 VGFO15240 615 aaPredicted RBP17.19■□□□□ 0.34
CLK3-206ENST00000562078 CEBPAP49715 358 aaPredicted RBP17.18■□□□□ 0.34
CLK3-206ENST00000562078 CDCA8Q53HL2 280 aa17.18■□□□□ 0.34
CLK3-206ENST00000562078 RIMS1Q86UR5 1692 aaKnown RBP17.18■□□□□ 0.34
CLK3-206ENST00000562078 L1TD1Q5T7N2 865 aaKnown RBP17.18■□□□□ 0.34
CLK3-206ENST00000562078 A2ML1A8K2U0 1454 aa17.17■□□□□ 0.34
CLK3-206ENST00000562078 SENP3Q9H4L4 574 aaPredicted RBP17.15■□□□□ 0.34
CLK3-206ENST00000562078 AAMPQ13685 434 aa17.15■□□□□ 0.34
CLK3-206ENST00000562078 ADGRB1O14514 1584 aa17.15■□□□□ 0.34
CLK3-206ENST00000562078 PLIN1O60240 522 aa17.14■□□□□ 0.33
CLK3-206ENST00000562078 UBR1Q8IWV7 1749 aa17.14■□□□□ 0.33
CLK3-206ENST00000562078 KNSTRNQ9Y448 316 aa17.13■□□□□ 0.33
CLK3-206ENST00000562078 ASXL1Q8IXJ9 1541 aa17.13■□□□□ 0.33
CLK3-206ENST00000562078 ZFYVE9O95405 1425 aa17.13■□□□□ 0.33
CLK3-206ENST00000562078 XRCC6P12956 609 aaKnown RBP eCLIP17.13■□□□□ 0.33
CLK3-206ENST00000562078 ARHGEF28Q8N1W1 1705 aaKnown RBP17.13■□□□□ 0.33
CLK3-206ENST00000562078 C8orf34Q49A92 452 aa17.12■□□□□ 0.33
CLK3-206ENST00000562078 PANK2Q9BZ23 570 aa17.12■□□□□ 0.33
CLK3-206ENST00000562078 C14orf93Q9H972 538 aaKnown RBP17.12■□□□□ 0.33
CLK3-206ENST00000562078 RIMS2Q9UQ26 1411 aa17.12■□□□□ 0.33
CLK3-206ENST00000562078 NLRP1Q9C000 1473 aa17.11■□□□□ 0.33
CLK3-206ENST00000562078 ADAMTSL3P82987 1691 aa17.1■□□□□ 0.33
CLK3-206ENST00000562078 PRDM4Q9UKN5 801 aa17.1■□□□□ 0.33
CLK3-206ENST00000562078 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
CLK3-206ENST00000562078 TRAK1Q9UPV9 953 aa17.1■□□□□ 0.33
CLK3-206ENST00000562078 CENPJQ9HC77 1338 aaPredicted RBP17.1■□□□□ 0.33
CLK3-206ENST00000562078 SBNO2Q9Y2G9 1366 aa17.1■□□□□ 0.33
CLK3-206ENST00000562078 FAM161AQ3B820 660 aa17.09■□□□□ 0.33
CLK3-206ENST00000562078 TMEM132EQ6IEE7 984 aa17.09■□□□□ 0.33
CLK3-206ENST00000562078 CRBNQ96SW2 442 aa17.09■□□□□ 0.33
CLK3-206ENST00000562078 FGD1P98174 961 aa17.08■□□□□ 0.33
CLK3-206ENST00000562078 RGS3P49796 1198 aa17.07■□□□□ 0.32
CLK3-206ENST00000562078 BLMP54132 1417 aaPredicted RBP17.06■□□□□ 0.32
CLK3-206ENST00000562078 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.06■□□□□ 0.32
CLK3-206ENST00000562078 ALKQ9UM73 1620 aa17.05■□□□□ 0.32
CLK3-206ENST00000562078 GOLGA6L3A6NEY3 463 aa17.05■□□□□ 0.32
CLK3-206ENST00000562078 PPP2R1AP30153 589 aa17.05■□□□□ 0.32
CLK3-206ENST00000562078 HDGFP51858 240 aaKnown RBP17.05■□□□□ 0.32
CLK3-206ENST00000562078 PDCL3Q9H2J4 239 aa17.05■□□□□ 0.32
CLK3-206ENST00000562078 CALD1Q05682 793 aaKnown RBP17.04■□□□□ 0.32
CLK3-206ENST00000562078 SLKQ9H2G2 1235 aaPredicted RBP17.04■□□□□ 0.32
CLK3-206ENST00000562078 TMEM2Q9UHN6 1383 aa17.03■□□□□ 0.32
CLK3-206ENST00000562078 NPC1L1Q9UHC9 1359 aa17.03■□□□□ 0.32
CLK3-206ENST00000562078 KDM2BQ8NHM5 1336 aa17.02■□□□□ 0.32
CLK3-206ENST00000562078 CDCA7LQ96GN5 454 aa17.02■□□□□ 0.32
CLK3-206ENST00000562078 FSD2A1L4K1 749 aa17.02■□□□□ 0.31
CLK3-206ENST00000562078 ERBB4Q15303 1308 aa17.01■□□□□ 0.31
CLK3-206ENST00000562078 STK26Q9P289 416 aa17.01■□□□□ 0.31
CLK3-206ENST00000562078 INSRP06213 1382 aa17.01■□□□□ 0.31
CLK3-206ENST00000562078 GZF1Q9H116 711 aaPredicted RBP17.01■□□□□ 0.31
CLK3-206ENST00000562078 SETD1AO15047 1707 aaKnown RBP17■□□□□ 0.31
CLK3-206ENST00000562078 NRXN3Q9Y4C0 1643 aa17■□□□□ 0.31
CLK3-206ENST00000562078 CARD14Q9BXL6 1004 aa17■□□□□ 0.31
CLK3-206ENST00000562078 TULP4Q9NRJ4 1543 aa17■□□□□ 0.31
CLK3-206ENST00000562078 CEP170BQ9Y4F5 1589 aaPredicted RBP17■□□□□ 0.31
CLK3-206ENST00000562078 C20orf194Q5TEA3 1177 aa16.99■□□□□ 0.31
CLK3-206ENST00000562078 YTHDC2Q9H6S0 1430 aaKnown RBP16.98■□□□□ 0.31
CLK3-206ENST00000562078 ESPNB1AK53 854 aa16.98■□□□□ 0.31
CLK3-206ENST00000562078 PTPRMP28827 1452 aa16.97■□□□□ 0.31
CLK3-206ENST00000562078 THEMISQ8N1K5 641 aaPredicted RBP16.97■□□□□ 0.31
CLK3-206ENST00000562078 ADAMTS8Q9UP79 889 aa16.97■□□□□ 0.31
CLK3-206ENST00000562078 EID1Q9Y6B2 187 aa16.97■□□□□ 0.31
CLK3-206ENST00000562078 NSD3Q9BZ95 1437 aa16.97■□□□□ 0.31
CLK3-206ENST00000562078 WDR43Q15061 677 aaKnown RBP eCLIP16.96■□□□□ 0.31
CLK3-206ENST00000562078 TXNDC2Q86VQ3 553 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms