RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CPS1P31327 1500 aa15.49■□□□□ 0.07
USP3-218ENST00000560202 KNDC1Q76NI1 1749 aa15.49■□□□□ 0.07
USP3-218ENST00000560202 MINK1Q8N4C8 1332 aaPredicted RBP15.48■□□□□ 0.07
USP3-218ENST00000560202 HSPA2P54652 639 aa15.48■□□□□ 0.07
USP3-218ENST00000560202 LMTK3Q96Q04 1460 aa15.48■□□□□ 0.07
USP3-218ENST00000560202 ROBO2Q9HCK4 1378 aa15.48■□□□□ 0.07
USP3-218ENST00000560202 PUS7Q96PZ0 661 aaKnown RBP15.47■□□□□ 0.07
USP3-218ENST00000560202 TULP4Q9NRJ4 1543 aa15.46■□□□□ 0.07
USP3-218ENST00000560202 ANP32CO43423 234 aa15.45■□□□□ 0.06
USP3-218ENST00000560202 PTCH1Q13635 1447 aa15.44■□□□□ 0.06
USP3-218ENST00000560202 PANK3Q9H999 370 aa15.44■□□□□ 0.06
USP3-218ENST00000560202 KCNA6P17658 529 aa15.43■□□□□ 0.06
USP3-218ENST00000560202 CABP2Q9NPB3 220 aa15.43■□□□□ 0.06
USP3-218ENST00000560202 XRN1Q8IZH2 1706 aaKnown RBP15.43■□□□□ 0.06
USP3-218ENST00000560202 SRPK2P78362 688 aaKnown RBP15.42■□□□□ 0.06
USP3-218ENST00000560202 CDK19Q9BWU1 502 aa15.42■□□□□ 0.06
USP3-218ENST00000560202 PER1O15534 1290 aaPredicted RBP15.41■□□□□ 0.06
USP3-218ENST00000560202 WASLO00401 505 aaPredicted RBP15.4■□□□□ 0.06
USP3-218ENST00000560202 TMC1Q8TDI8 760 aa15.4■□□□□ 0.06
USP3-218ENST00000560202 MYOM1P52179 1685 aa15.4■□□□□ 0.06
USP3-218ENST00000560202 ATAD2Q6PL18 1390 aa15.39■□□□□ 0.05
USP3-218ENST00000560202 CHD2O14647 1828 aaKnown RBP15.38■□□□□ 0.05
USP3-218ENST00000560202 SLC12A5Q9H2X9 1139 aa15.38■□□□□ 0.05
USP3-218ENST00000560202 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.37■□□□□ 0.05
USP3-218ENST00000560202 PRKRIP1Q9H875 184 aaPredicted RBP15.37■□□□□ 0.05
USP3-218ENST00000560202 NINLQ9Y2I6 1382 aa15.37■□□□□ 0.05
USP3-218ENST00000560202 ADGRB2O60241 1585 aa15.36■□□□□ 0.05
USP3-218ENST00000560202 KNSTRNQ9Y448 316 aa15.35■□□□□ 0.05
USP3-218ENST00000560202 NWD1Q149M9 1564 aa15.34■□□□□ 0.05
USP3-218ENST00000560202 CNGB1Q14028 1251 aaPredicted RBP15.34■□□□□ 0.05
USP3-218ENST00000560202 CARD14Q9BXL6 1004 aa15.34■□□□□ 0.05
USP3-218ENST00000560202 STRCQ7RTU9 1775 aa15.34■□□□□ 0.05
USP3-218ENST00000560202 CCER2I3L3R5 266 aa15.33■□□□□ 0.04
USP3-218ENST00000560202 NUDT16Q96DE0 195 aaKnown RBP15.33■□□□□ 0.04
USP3-218ENST00000560202 CABP1Q9NZU7 370 aa15.33■□□□□ 0.04
USP3-218ENST00000560202 ANKRD36BQ8N2N9 1353 aa15.32■□□□□ 0.04
USP3-218ENST00000560202 CCDC61Q9Y6R9 512 aa15.32■□□□□ 0.04
USP3-218ENST00000560202 KTN1Q86UP2 1357 aaKnown RBP15.31■□□□□ 0.04
USP3-218ENST00000560202 PRR36Q9H6K5 1346 aa15.31■□□□□ 0.04
USP3-218ENST00000560202 AMER1Q5JTC6 1135 aaPredicted RBP15.31■□□□□ 0.04
USP3-218ENST00000560202 PROSER2Q86WR7 435 aaPredicted RBP15.31■□□□□ 0.04
USP3-218ENST00000560202 RBM33Q96EV2 1170 aaKnown RBP15.31■□□□□ 0.04
USP3-218ENST00000560202 TERF2IPQ9NYB0 399 aa15.31■□□□□ 0.04
USP3-218ENST00000560202 NKTRP30414 1462 aaKnown RBP15.3■□□□□ 0.04
USP3-218ENST00000560202 RALBP1Q15311 655 aa15.3■□□□□ 0.04
USP3-218ENST00000560202 CC2D1BQ5T0F9 858 aaKnown RBP15.3■□□□□ 0.04
USP3-218ENST00000560202 ATP7BP35670 1465 aa15.3■□□□□ 0.04
USP3-218ENST00000560202 PPIP5K1Q6PFW1 1433 aa15.3■□□□□ 0.04
USP3-218ENST00000560202 NSD3Q9BZ95 1437 aa15.29■□□□□ 0.04
USP3-218ENST00000560202 A0A1W2PP64 1363 aa15.29■□□□□ 0.04
USP3-218ENST00000560202 NPC1L1Q9UHC9 1359 aa15.29■□□□□ 0.04
USP3-218ENST00000560202 CD163L1Q9NR16 1453 aa15.28■□□□□ 0.04
USP3-218ENST00000560202 NUTM2FA1L443 756 aa15.28■□□□□ 0.04
USP3-218ENST00000560202 CENPBP07199 599 aaPredicted RBP15.28■□□□□ 0.04
USP3-218ENST00000560202 HDGFL2Q7Z4V5 671 aaPredicted RBP15.28■□□□□ 0.04
USP3-218ENST00000560202 ADGRL3Q9HAR2 1447 aa15.28■□□□□ 0.04
USP3-218ENST00000560202 PARD3Q8TEW0 1356 aa15.28■□□□□ 0.04
USP3-218ENST00000560202 DMRT2Q9Y5R5 561 aa15.28■□□□□ 0.04
USP3-218ENST00000560202 C14orf37Q86TY3 774 aa15.27■□□□□ 0.03
USP3-218ENST00000560202 NALCNQ8IZF0 1738 aa15.26■□□□□ 0.03
USP3-218ENST00000560202 CDC42BPGQ6DT37 1551 aa15.26■□□□□ 0.03
USP3-218ENST00000560202 ANKARQ7Z5J8 1434 aa15.26■□□□□ 0.03
USP3-218ENST00000560202 CGNL1Q0VF96 1302 aa15.25■□□□□ 0.03
USP3-218ENST00000560202 CPSF1Q10570 1443 aaKnown RBP15.25■□□□□ 0.03
USP3-218ENST00000560202 PLEKHG3A1L390 1219 aa15.25■□□□□ 0.03
USP3-218ENST00000560202 STRCP1A6NGW2 1772 aa15.24■□□□□ 0.03
USP3-218ENST00000560202 MYBBP1AQ9BQG0 1328 aaKnown RBP15.24■□□□□ 0.03
USP3-218ENST00000560202 TMEM94Q12767 1356 aa15.24■□□□□ 0.03
USP3-218ENST00000560202 USP32Q8NFA0 1604 aa15.24■□□□□ 0.03
USP3-218ENST00000560202 NCOA3Q9Y6Q9 1424 aa15.24■□□□□ 0.03
USP3-218ENST00000560202 C19orf44Q9H6X5 657 aa15.23■□□□□ 0.03
USP3-218ENST00000560202 FMN2Q9NZ56 1722 aa15.23■□□□□ 0.03
USP3-218ENST00000560202 ZNF335Q9H4Z2 1342 aaPredicted RBP15.23■□□□□ 0.03
USP3-218ENST00000560202 TOPAZ1Q8N9V7 1692 aa15.23■□□□□ 0.03
USP3-218ENST00000560202 CCDC184Q52MB2 194 aa15.22■□□□□ 0.03
USP3-218ENST00000560202 ZNF692Q9BU19 519 aaPredicted RBP15.22■□□□□ 0.03
USP3-218ENST00000560202 MRS2Q9HD23 443 aa15.22■□□□□ 0.03
USP3-218ENST00000560202 ACEP12821 1306 aa15.21■□□□□ 0.03
USP3-218ENST00000560202 NSD2O96028 1365 aa15.21■□□□□ 0.03
USP3-218ENST00000560202 NLRP13Q86W25 1043 aa15.2■□□□□ 0.02
USP3-218ENST00000560202 PMFBP1Q8TBY8 1022 aa15.2■□□□□ 0.02
USP3-218ENST00000560202 EDC4Q6P2E9 1401 aaKnown RBP15.19■□□□□ 0.02
USP3-218ENST00000560202 FYB1O15117 783 aa15.19■□□□□ 0.02
USP3-218ENST00000560202 MORC1Q86VD1 984 aa15.19■□□□□ 0.02
USP3-218ENST00000560202 ITSN1Q15811 1721 aa15.19■□□□□ 0.02
USP3-218ENST00000560202 POLR3AO14802 1390 aaPredicted RBP15.18■□□□□ 0.02
USP3-218ENST00000560202 BRD4O60885 1362 aaPredicted RBP15.18■□□□□ 0.02
USP3-218ENST00000560202 LRRC7Q96NW7 1537 aa15.18■□□□□ 0.02
USP3-218ENST00000560202 PPP2R1AP30153 589 aa15.18■□□□□ 0.02
USP3-218ENST00000560202 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.18■□□□□ 0.02
USP3-218ENST00000560202 NGDNQ8NEJ9 315 aaKnown RBP15.18■□□□□ 0.02
USP3-218ENST00000560202 ATF3P18847 181 aa15.17■□□□□ 0.02
USP3-218ENST00000560202 GGNBP2Q9H3C7 697 aa15.17■□□□□ 0.02
USP3-218ENST00000560202 DCCP43146 1447 aa15.17■□□□□ 0.02
USP3-218ENST00000560202 ESCO1Q5FWF5 840 aa15.16■□□□□ 0.02
USP3-218ENST00000560202 YTHDC1Q96MU7 727 aaKnown RBP15.16■□□□□ 0.02
USP3-218ENST00000560202 PHF8Q9UPP1 1060 aa15.16■□□□□ 0.02
USP3-218ENST00000560202 AKAP12Q02952 1782 aa15.16■□□□□ 0.02
USP3-218ENST00000560202 USP6P35125 1406 aa15.16■□□□□ 0.02
USP3-218ENST00000560202 MON2Q7Z3U7 1717 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms