RNA–Protein interactions for RNA: ENST00000557866.1

SPG11-204, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 468 nt, Biotype non stop decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-204ENST00000557866 PTCD2Q8WV60 388 aaKnown RBP10.58□□□□□ -0.72
SPG11-204ENST00000557866 KRTAP3-3Q9BYR6 98 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 KRTAP3-2Q9BYR7 98 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 RTN4Q9NQC3 1192 aaKnown RBP10.58□□□□□ -0.72
SPG11-204ENST00000557866 FAM135AQ9P2D6 1515 aa10.58□□□□□ -0.72
SPG11-204ENST00000557866 MAGI2Q86UL8 1455 aa10.57□□□□□ -0.72
SPG11-204ENST00000557866 NUDT7P0C024 238 aa10.57□□□□□ -0.72
SPG11-204ENST00000557866 DIEXFQ68CQ4 756 aaKnown RBP10.57□□□□□ -0.72
SPG11-204ENST00000557866 BBXQ8WY36 941 aaPredicted RBP10.57□□□□□ -0.72
SPG11-204ENST00000557866 CRISPLD2Q9H0B8 497 aa10.57□□□□□ -0.72
SPG11-204ENST00000557866 ATP7AQ04656 1500 aa10.57□□□□□ -0.72
SPG11-204ENST00000557866 UNC13BO14795 1591 aa10.56□□□□□ -0.72
SPG11-204ENST00000557866 INO80Q9ULG1 1556 aaPredicted RBP10.56□□□□□ -0.72
SPG11-204ENST00000557866 ZNF518AQ6AHZ1 1483 aa10.56□□□□□ -0.72
SPG11-204ENST00000557866 DHX29Q7Z478 1369 aaKnown RBP10.56□□□□□ -0.72
SPG11-204ENST00000557866 RAPGEF3O95398 923 aa10.56□□□□□ -0.72
SPG11-204ENST00000557866 TEX14Q8IWB6 1497 aa10.55□□□□□ -0.72
SPG11-204ENST00000557866 TBC1D12O60347 775 aa10.55□□□□□ -0.72
SPG11-204ENST00000557866 PLA2R1Q13018 1463 aa10.55□□□□□ -0.72
SPG11-204ENST00000557866 MLH3Q9UHC1 1453 aa10.55□□□□□ -0.72
SPG11-204ENST00000557866 MAP3K4Q9Y6R4 1608 aa10.55□□□□□ -0.72
SPG11-204ENST00000557866 CFAP74Q9C0B2 1584 aa10.54□□□□□ -0.72
SPG11-204ENST00000557866 DIP2BQ9P265 1576 aa10.54□□□□□ -0.72
SPG11-204ENST00000557866 MYT1LQ9UL68 1186 aa10.54□□□□□ -0.72
SPG11-204ENST00000557866 KDM5CP41229 1560 aa10.53□□□□□ -0.72
SPG11-204ENST00000557866 NBPF8Q3BBV2 869 aa10.53□□□□□ -0.72
SPG11-204ENST00000557866 KIF3BO15066 747 aa10.52□□□□□ -0.73
SPG11-204ENST00000557866 NCKAP5LQ9HCH0 1330 aa10.52□□□□□ -0.73
SPG11-204ENST00000557866 KIDINS220Q9ULH0 1771 aa10.52□□□□□ -0.73
SPG11-204ENST00000557866 IQGAP3Q86VI3 1631 aa10.51□□□□□ -0.73
SPG11-204ENST00000557866 A2MP01023 1474 aa10.51□□□□□ -0.73
SPG11-204ENST00000557866 PPP1R15BQ5SWA1 713 aa10.51□□□□□ -0.73
SPG11-204ENST00000557866 LHX6Q9UPM6 363 aa10.51□□□□□ -0.73
SPG11-204ENST00000557866 FRMPD1Q5SYB0 1578 aa10.5□□□□□ -0.73
SPG11-204ENST00000557866 VWDEQ8N2E2 1590 aa10.49□□□□□ -0.73
SPG11-204ENST00000557866 PSDA5PKW4 1024 aaPredicted RBP10.49□□□□□ -0.73
SPG11-204ENST00000557866 LARP6Q9BRS8 491 aaKnown RBP10.49□□□□□ -0.73
SPG11-204ENST00000557866 HIRIP3Q9BW71 556 aaPredicted RBP10.49□□□□□ -0.73
SPG11-204ENST00000557866 KDM4FA0A1W2PPD8 638 aa10.48□□□□□ -0.73
SPG11-204ENST00000557866 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.48□□□□□ -0.73
SPG11-204ENST00000557866 YEATS2Q9ULM3 1422 aa10.48□□□□□ -0.73
SPG11-204ENST00000557866 ATP10AO60312 1499 aa10.48□□□□□ -0.73
SPG11-204ENST00000557866 HECW2Q9P2P5 1572 aa10.48□□□□□ -0.73
SPG11-204ENST00000557866 DEPDC5O75140 1603 aa10.47□□□□□ -0.73
SPG11-204ENST00000557866 MROH1Q8NDA8 1641 aa10.47□□□□□ -0.73
SPG11-204ENST00000557866 PPRC1Q5VV67 1664 aaKnown RBP10.47□□□□□ -0.73
SPG11-204ENST00000557866 OXER1Q8TDS5 423 aa10.46□□□□□ -0.73
SPG11-204ENST00000557866 DDX27Q96GQ7 796 aaKnown RBP10.46□□□□□ -0.73
SPG11-204ENST00000557866 CCDC144AA2RUR9 1427 aa10.46□□□□□ -0.74
SPG11-204ENST00000557866 PTPRTO14522 1441 aa10.46□□□□□ -0.74
SPG11-204ENST00000557866 PRDM15P57071 1507 aaPredicted RBP10.46□□□□□ -0.74
SPG11-204ENST00000557866 ABCA6Q8N139 1617 aa10.45□□□□□ -0.74
SPG11-204ENST00000557866 EIF2AK4Q9P2K8 1649 aaKnown RBP10.45□□□□□ -0.74
SPG11-204ENST00000557866 COL17A1Q9UMD9 1497 aaPredicted RBP10.45□□□□□ -0.74
SPG11-204ENST00000557866 UHRF1BP1Q6BDS2 1440 aa10.45□□□□□ -0.74
SPG11-204ENST00000557866 KANK1Q14678 1352 aa10.45□□□□□ -0.74
SPG11-204ENST00000557866 HSPA5P11021 654 aaKnown RBP10.45□□□□□ -0.74
SPG11-204ENST00000557866 SPRYD3Q8NCJ5 442 aa10.45□□□□□ -0.74
SPG11-204ENST00000557866 RICTORQ6R327 1708 aa10.44□□□□□ -0.74
SPG11-204ENST00000557866 DIP2CQ9Y2E4 1556 aa10.44□□□□□ -0.74
SPG11-204ENST00000557866 PBX2P40425 430 aa10.44□□□□□ -0.74
SPG11-204ENST00000557866 MFSD10Q14728 455 aa10.44□□□□□ -0.74
SPG11-204ENST00000557866 LMTK2Q8IWU2 1503 aa10.43□□□□□ -0.74
SPG11-204ENST00000557866 RGL3Q3MIN7 710 aa10.43□□□□□ -0.74
SPG11-204ENST00000557866 GGT6Q6P531 493 aa10.43□□□□□ -0.74
SPG11-204ENST00000557866 UPF1Q92900 1129 aaKnown RBP eCLIP10.43□□□□□ -0.74
SPG11-204ENST00000557866 RNF17Q9BXT8 1623 aaKnown RBP10.43□□□□□ -0.74
SPG11-204ENST00000557866 ZMYM4Q5VZL5 1548 aa10.43□□□□□ -0.74
SPG11-204ENST00000557866 DCAF11Q8TEB1 546 aa10.42□□□□□ -0.74
SPG11-204ENST00000557866 KDM2AQ9Y2K7 1162 aa10.42□□□□□ -0.74
SPG11-204ENST00000557866 SPATA31E1Q6ZUB1 1445 aa10.41□□□□□ -0.74
SPG11-204ENST00000557866 E9PCH4 1651 aa10.41□□□□□ -0.74
SPG11-204ENST00000557866 EIF4G2P78344 907 aaKnown RBP eCLIP10.41□□□□□ -0.74
SPG11-204ENST00000557866 ZNF326Q5BKZ1 582 aaKnown RBP10.41□□□□□ -0.74
SPG11-204ENST00000557866 CADPS2Q86UW7 1296 aa10.41□□□□□ -0.74
SPG11-204ENST00000557866 TET3O43151 1660 aa10.41□□□□□ -0.74
SPG11-204ENST00000557866 TRPM2O94759 1503 aa10.4□□□□□ -0.74
SPG11-204ENST00000557866 ABCC3O15438 1527 aa10.39□□□□□ -0.75
SPG11-204ENST00000557866 EFCAB6Q5THR3 1501 aa10.39□□□□□ -0.75
SPG11-204ENST00000557866 BCORL1Q5H9F3 1711 aa10.39□□□□□ -0.75
SPG11-204ENST00000557866 C11orf95C9JLR9 678 aaPredicted RBP10.39□□□□□ -0.75
SPG11-204ENST00000557866 DDX10Q13206 875 aaKnown RBP10.39□□□□□ -0.75
SPG11-204ENST00000557866 ANKRD13DQ6ZTN6 518 aa10.39□□□□□ -0.75
SPG11-204ENST00000557866 KIF13AQ9H1H9 1805 aa10.39□□□□□ -0.75
SPG11-204ENST00000557866 NPATQ14207 1427 aa10.39□□□□□ -0.75
SPG11-204ENST00000557866 PRAG1Q86YV5 1406 aa10.39□□□□□ -0.75
SPG11-204ENST00000557866 TSPOAP1O95153 1857 aa10.38□□□□□ -0.75
SPG11-204ENST00000557866 WASHC2CQ9Y4E1 1318 aa10.38□□□□□ -0.75
SPG11-204ENST00000557866 RALGAPBQ86X10 1494 aa10.38□□□□□ -0.75
SPG11-204ENST00000557866 LSM11P83369 360 aaKnown RBP eCLIP10.38□□□□□ -0.75
SPG11-204ENST00000557866 PPP4R3BQ5MIZ7 849 aa10.38□□□□□ -0.75
SPG11-204ENST00000557866 ARHGAP33O14559 1287 aa10.37□□□□□ -0.75
SPG11-204ENST00000557866 PTGER2P43116 358 aa10.37□□□□□ -0.75
SPG11-204ENST00000557866 CLTCL1P53675 1640 aa10.36□□□□□ -0.75
SPG11-204ENST00000557866 WASHC2AQ641Q2 1341 aa10.36□□□□□ -0.75
SPG11-204ENST00000557866 MAP3K9P80192 1104 aa10.36□□□□□ -0.75
SPG11-204ENST00000557866 POTEEQ6S8J3 1075 aa10.36□□□□□ -0.75
SPG11-204ENST00000557866 USP47Q96K76 1375 aa10.36□□□□□ -0.75
SPG11-204ENST00000557866 UGGT1Q9NYU2 1555 aa10.35□□□□□ -0.75
SPG11-204ENST00000557866 NBPF1Q3BBV0 1214 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms