RNA–Protein interactions for RNA: ENST00000546120.2

UBC-213, Transcript of ubiquitin C, human

TSL 5 BASIC

Gene UBC, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBC-213	ENST00000546120	CCDC39	Q9UFE4	941 aa		12.7	□□□□□ -0.38
UBC-213	ENST00000546120	SYNM	O15061	1565 aa		12.69	□□□□□ -0.38
UBC-213	ENST00000546120	ASXL1	Q8IXJ9	1541 aa		12.69	□□□□□ -0.38
UBC-213	ENST00000546120	LETM1	O95202	739 aa	Predicted RBP	12.69	□□□□□ -0.38
UBC-213	ENST00000546120	NUCB2	P80303	420 aa		12.69	□□□□□ -0.38
UBC-213	ENST00000546120	CCDC94	Q9BW85	323 aa	Predicted RBP	12.69	□□□□□ -0.38
UBC-213	ENST00000546120	GPATCH8	Q9UKJ3	1502 aa	Known RBP	12.68	□□□□□ -0.38
UBC-213	ENST00000546120	PDLIM2	Q96JY6	352 aa		12.68	□□□□□ -0.38
UBC-213	ENST00000546120	ZNF692	Q9BU19	519 aa	Predicted RBP	12.68	□□□□□ -0.38
UBC-213	ENST00000546120	RERE	Q9P2R6	1566 aa		12.68	□□□□□ -0.38
UBC-213	ENST00000546120	FAM193A	P78312	1265 aa		12.67	□□□□□ -0.38
UBC-213	ENST00000546120	RBM10	P98175	930 aa	Known RBP	12.67	□□□□□ -0.38
UBC-213	ENST00000546120	DMTN	Q08495	405 aa		12.67	□□□□□ -0.38
UBC-213	ENST00000546120	CWC22	Q9HCG8	908 aa	Known RBP	12.67	□□□□□ -0.38
UBC-213	ENST00000546120	ARHGEF5	Q12774	1597 aa		12.67	□□□□□ -0.38
UBC-213	ENST00000546120	ERCC6L2	Q5T890	1561 aa		12.66	□□□□□ -0.38
UBC-213	ENST00000546120	SEC24B	O95487	1268 aa		12.66	□□□□□ -0.38
UBC-213	ENST00000546120	HSP90AB1	P08238	724 aa	Known RBP	12.66	□□□□□ -0.38
UBC-213	ENST00000546120	TRH	P20396	242 aa	Predicted RBP	12.66	□□□□□ -0.38
UBC-213	ENST00000546120	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.66	□□□□□ -0.38
UBC-213	ENST00000546120	CC2D1B	Q5T0F9	858 aa	Known RBP	12.66	□□□□□ -0.38
UBC-213	ENST00000546120	GZF1	Q9H116	711 aa	Predicted RBP	12.66	□□□□□ -0.38
UBC-213	ENST00000546120	CDK13	Q14004	1512 aa	Known RBP	12.66	□□□□□ -0.38
UBC-213	ENST00000546120	POLR3A	O14802	1390 aa	Predicted RBP	12.66	□□□□□ -0.38
UBC-213	ENST00000546120	C9orf84	Q5VXU9	1444 aa		12.65	□□□□□ -0.38
UBC-213	ENST00000546120	FGD1	P98174	961 aa		12.65	□□□□□ -0.38
UBC-213	ENST00000546120	TNPO1	Q92973	898 aa	Known RBP	12.65	□□□□□ -0.38
UBC-213	ENST00000546120	PDZRN3	Q9UPQ7	1066 aa		12.65	□□□□□ -0.38
UBC-213	ENST00000546120	ZKSCAN5	Q9Y2L8	839 aa		12.65	□□□□□ -0.38
UBC-213	ENST00000546120	ERBB4	Q15303	1308 aa		12.64	□□□□□ -0.39
UBC-213	ENST00000546120	SHROOM2	Q13796	1616 aa		12.64	□□□□□ -0.39
UBC-213	ENST00000546120	RIPK4	P57078	832 aa		12.64	□□□□□ -0.39
UBC-213	ENST00000546120	WDR7	Q9Y4E6	1490 aa		12.64	□□□□□ -0.39
UBC-213	ENST00000546120	RAPGEF6	Q8TEU7	1601 aa		12.63	□□□□□ -0.39
UBC-213	ENST00000546120	GTF2F1	P35269	517 aa	Known RBP eCLIP	12.63	□□□□□ -0.39	9e-7	■■□□□ 13.9
UBC-213	ENST00000546120	CNGB1	Q14028	1251 aa	Predicted RBP	12.63	□□□□□ -0.39
UBC-213	ENST00000546120	PLPPR3	Q6T4P5	718 aa		12.63	□□□□□ -0.39
UBC-213	ENST00000546120	JPH4	Q96JJ6	628 aa		12.63	□□□□□ -0.39
UBC-213	ENST00000546120	NUP153	P49790	1475 aa	Known RBP	12.63	□□□□□ -0.39
UBC-213	ENST00000546120	DDX19B	Q9UMR2	479 aa		12.62	□□□□□ -0.39
UBC-213	ENST00000546120	UHRF1BP1L	A0JNW5	1464 aa		12.61	□□□□□ -0.39
UBC-213	ENST00000546120	DISP3	Q9P2K9	1392 aa		12.61	□□□□□ -0.39
UBC-213	ENST00000546120	TPM3	P06753	285 aa		12.61	□□□□□ -0.39
UBC-213	ENST00000546120	RARS	P54136	660 aa	Known RBP	12.61	□□□□□ -0.39
UBC-213	ENST00000546120	MVP	Q14764	893 aa	Known RBP	12.61	□□□□□ -0.39
UBC-213	ENST00000546120	SKAP1	Q86WV1	359 aa		12.61	□□□□□ -0.39
UBC-213	ENST00000546120	FAM184A	Q8NB25	1140 aa		12.61	□□□□□ -0.39
UBC-213	ENST00000546120	ZNF428	Q96B54	188 aa		12.61	□□□□□ -0.39
UBC-213	ENST00000546120	RTEL1-TNFRSF6B	F6WH68	1400 aa		12.61	□□□□□ -0.39
UBC-213	ENST00000546120	PRG4	Q92954	1404 aa	Predicted RBP	12.61	□□□□□ -0.39
UBC-213	ENST00000546120	ADGRL1	O94910	1474 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	UQCRHL	A0A096LP55	91 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120		K7ELQ4	463 aa	Predicted RBP	12.6	□□□□□ -0.39
UBC-213	ENST00000546120	BCAR3	O75815	825 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	MBD3	O95983	291 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	UQCRH	P07919	91 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	UVSSA	Q2YD98	709 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	CREBRF	Q8IUR6	639 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	PDCL2	Q8N4E4	241 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	FAM13B	Q9NYF5	915 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	KDM2A	Q9Y2K7	1162 aa		12.6	□□□□□ -0.39
UBC-213	ENST00000546120	DDX49	Q9Y6V7	483 aa	Known RBP	12.6	□□□□□ -0.39
UBC-213	ENST00000546120	FAM135A	Q9P2D6	1515 aa		12.59	□□□□□ -0.39
UBC-213	ENST00000546120	IPO8	O15397	1037 aa	Known RBP	12.59	□□□□□ -0.39
UBC-213	ENST00000546120	PHF14	O94880	888 aa		12.59	□□□□□ -0.39
UBC-213	ENST00000546120	BMP2KL	Q5H9B9	411 aa		12.59	□□□□□ -0.39
UBC-213	ENST00000546120	ZKSCAN2	Q63HK3	967 aa		12.59	□□□□□ -0.39
UBC-213	ENST00000546120	WWC1	Q8IX03	1113 aa		12.59	□□□□□ -0.39
UBC-213	ENST00000546120	MYRIP	Q8NFW9	859 aa		12.59	□□□□□ -0.39
UBC-213	ENST00000546120	SYAP1	Q96A49	352 aa	Predicted RBP	12.59	□□□□□ -0.39
UBC-213	ENST00000546120	FEZ1	Q99689	392 aa		12.59	□□□□□ -0.39
UBC-213	ENST00000546120	COG6	Q9Y2V7	657 aa		12.59	□□□□□ -0.39
UBC-213	ENST00000546120	RNF17	Q9BXT8	1623 aa	Known RBP	12.59	□□□□□ -0.39
UBC-213	ENST00000546120	APAF1	O14727	1248 aa		12.58	□□□□□ -0.4
UBC-213	ENST00000546120	RUNDC1	Q96C34	613 aa		12.58	□□□□□ -0.4
UBC-213	ENST00000546120	R3HCC1	Q9Y3T6	440 aa	Known RBP	12.58	□□□□□ -0.4
UBC-213	ENST00000546120	KIAA0556	O60303	1618 aa		12.58	□□□□□ -0.4
UBC-213	ENST00000546120	ZNF644	Q9H582	1327 aa	Predicted RBP	12.58	□□□□□ -0.4
UBC-213	ENST00000546120	NEURL4	Q96JN8	1562 aa		12.57	□□□□□ -0.4
UBC-213	ENST00000546120	VGF	O15240	615 aa	Predicted RBP	12.57	□□□□□ -0.4
UBC-213	ENST00000546120	KIAA2012	Q0VF49	1180 aa		12.57	□□□□□ -0.4
UBC-213	ENST00000546120	GAS2L3	Q86XJ1	694 aa		12.57	□□□□□ -0.4
UBC-213	ENST00000546120	SCAF11	Q99590	1463 aa	Known RBP	12.57	□□□□□ -0.4
UBC-213	ENST00000546120	RABEP1	Q15276	862 aa		12.56	□□□□□ -0.4
UBC-213	ENST00000546120	SYCP1	Q15431	976 aa		12.56	□□□□□ -0.4
UBC-213	ENST00000546120	DZIP1L	Q8IYY4	767 aa	Known RBP	12.56	□□□□□ -0.4
UBC-213	ENST00000546120	GCC1	Q96CN9	775 aa		12.56	□□□□□ -0.4
UBC-213	ENST00000546120	A2M	P01023	1474 aa		12.56	□□□□□ -0.4
UBC-213	ENST00000546120	MAGI2	Q86UL8	1455 aa		12.55	□□□□□ -0.4
UBC-213	ENST00000546120	MFAP1	P55081	439 aa	Known RBP	12.55	□□□□□ -0.4
UBC-213	ENST00000546120	DIAPH3	Q9NSV4	1193 aa		12.55	□□□□□ -0.4
UBC-213	ENST00000546120	PCDHB15	Q9Y5E8	787 aa		12.55	□□□□□ -0.4
UBC-213	ENST00000546120	IL16	Q14005	1332 aa		12.55	□□□□□ -0.4
UBC-213	ENST00000546120	MAST1	Q9Y2H9	1570 aa		12.55	□□□□□ -0.4
UBC-213	ENST00000546120	PLEKHD1	A6NEE1	506 aa		12.54	□□□□□ -0.4
UBC-213	ENST00000546120	BAG4	O95429	457 aa	Known RBP	12.54	□□□□□ -0.4
UBC-213	ENST00000546120	FTSJ3	Q8IY81	847 aa	Known RBP	12.54	□□□□□ -0.4
UBC-213	ENST00000546120	PUS7	Q96PZ0	661 aa	Known RBP	12.54	□□□□□ -0.4
UBC-213	ENST00000546120	UNC13B	O14795	1591 aa		12.54	□□□□□ -0.4
UBC-213	ENST00000546120	ATAD2	Q6PL18	1390 aa		12.54	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms