RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	HAX1	O00165	279 aa		11.75	□□□□□ -0.53
SNHG1-223	ENST00000545440	NLRP6	P59044	892 aa		11.75	□□□□□ -0.53
SNHG1-223	ENST00000545440	NOS1	P29475	1434 aa		11.75	□□□□□ -0.53
SNHG1-223	ENST00000545440	ARHGAP23	Q9P227	1491 aa		11.75	□□□□□ -0.53
SNHG1-223	ENST00000545440	STRCP1	A6NGW2	1772 aa		11.74	□□□□□ -0.53
SNHG1-223	ENST00000545440	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.74	□□□□□ -0.53
SNHG1-223	ENST00000545440	CPS1	P31327	1500 aa		11.73	□□□□□ -0.53
SNHG1-223	ENST00000545440	SCAF11	Q99590	1463 aa	Known RBP	11.73	□□□□□ -0.53
SNHG1-223	ENST00000545440	NPHP4	O75161	1426 aa	Predicted RBP	11.72	□□□□□ -0.53
SNHG1-223	ENST00000545440	TMEM131L	A2VDJ0	1609 aa		11.71	□□□□□ -0.53
SNHG1-223	ENST00000545440	ANKLE2	Q86XL3	938 aa		11.71	□□□□□ -0.53
SNHG1-223	ENST00000545440	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.71	□□□□□ -0.53
SNHG1-223	ENST00000545440	TMEM106C	Q9BVX2	250 aa		11.71	□□□□□ -0.53
SNHG1-223	ENST00000545440	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.7	□□□□□ -0.54
SNHG1-223	ENST00000545440	MKRN3	Q13064	507 aa	Known RBP	11.7	□□□□□ -0.54
SNHG1-223	ENST00000545440	WDR70	Q9NW82	654 aa		11.7	□□□□□ -0.54
SNHG1-223	ENST00000545440	NBR1	Q14596	966 aa		11.69	□□□□□ -0.54
SNHG1-223	ENST00000545440	EFCAB3	Q8N7B9	438 aa		11.69	□□□□□ -0.54
SNHG1-223	ENST00000545440	XIRP1	Q702N8	1843 aa	Known RBP	11.69	□□□□□ -0.54
SNHG1-223	ENST00000545440	TMEM2	Q9UHN6	1383 aa		11.67	□□□□□ -0.54
SNHG1-223	ENST00000545440	KIF1B	O60333	1816 aa		11.67	□□□□□ -0.54
SNHG1-223	ENST00000545440	ITGAE	P38570	1179 aa		11.66	□□□□□ -0.54
SNHG1-223	ENST00000545440	MS4A3	Q96HJ5	214 aa		11.66	□□□□□ -0.54
SNHG1-223	ENST00000545440	HFM1	A2PYH4	1435 aa		11.66	□□□□□ -0.54
SNHG1-223	ENST00000545440	NAIP	Q13075	1403 aa		11.66	□□□□□ -0.54
SNHG1-223	ENST00000545440	MFRP	Q9BY79	579 aa		11.65	□□□□□ -0.54
SNHG1-223	ENST00000545440	SLC52A1	Q9NWF4	448 aa		11.65	□□□□□ -0.54
SNHG1-223	ENST00000545440	NWD1	Q149M9	1564 aa		11.64	□□□□□ -0.55
SNHG1-223	ENST00000545440	TIE1	P35590	1138 aa		11.64	□□□□□ -0.55
SNHG1-223	ENST00000545440	CHD2	O14647	1828 aa	Known RBP	11.64	□□□□□ -0.55
SNHG1-223	ENST00000545440	NUP155	O75694	1391 aa		11.64	□□□□□ -0.55
SNHG1-223	ENST00000545440	ZFYVE9	O95405	1425 aa		11.63	□□□□□ -0.55
SNHG1-223	ENST00000545440	IDI1	Q13907	227 aa		11.63	□□□□□ -0.55
SNHG1-223	ENST00000545440	TRPM2	O94759	1503 aa		11.63	□□□□□ -0.55
SNHG1-223	ENST00000545440	CLTCL1	P53675	1640 aa		11.63	□□□□□ -0.55
SNHG1-223	ENST00000545440	EID1	Q9Y6B2	187 aa		11.62	□□□□□ -0.55
SNHG1-223	ENST00000545440	DIP2A	Q14689	1571 aa		11.62	□□□□□ -0.55
SNHG1-223	ENST00000545440	LRRC7	Q96NW7	1537 aa		11.61	□□□□□ -0.55
SNHG1-223	ENST00000545440	LTK	P29376	864 aa		11.61	□□□□□ -0.55
SNHG1-223	ENST00000545440	TXNDC2	Q86VQ3	553 aa		11.61	□□□□□ -0.55
SNHG1-223	ENST00000545440	ALK	Q9UM73	1620 aa		11.6	□□□□□ -0.55
SNHG1-223	ENST00000545440	PHF8	Q9UPP1	1060 aa		11.6	□□□□□ -0.55
SNHG1-223	ENST00000545440	NKTR	P30414	1462 aa	Known RBP	11.59	□□□□□ -0.55
SNHG1-223	ENST00000545440	NRXN3	Q9Y4C0	1643 aa		11.58	□□□□□ -0.56
SNHG1-223	ENST00000545440	RIMS2	Q9UQ26	1411 aa		11.58	□□□□□ -0.56
SNHG1-223	ENST00000545440	PLEKHG1	Q9ULL1	1385 aa		11.57	□□□□□ -0.56
SNHG1-223	ENST00000545440	PPL	O60437	1756 aa		11.57	□□□□□ -0.56
SNHG1-223	ENST00000545440	SETBP1	Q9Y6X0	1596 aa		11.56	□□□□□ -0.56
SNHG1-223	ENST00000545440	NEXMIF	Q5QGS0	1516 aa		11.55	□□□□□ -0.56
SNHG1-223	ENST00000545440	UBAP1L	F5GYI3	381 aa		11.55	□□□□□ -0.56
SNHG1-223	ENST00000545440	FBXO22	Q8NEZ5	403 aa		11.55	□□□□□ -0.56
SNHG1-223	ENST00000545440	SETD1A	O15047	1707 aa	Known RBP	11.55	□□□□□ -0.56
SNHG1-223	ENST00000545440	XRN1	Q8IZH2	1706 aa	Known RBP	11.55	□□□□□ -0.56
SNHG1-223	ENST00000545440	IFT172	Q9UG01	1749 aa		11.55	□□□□□ -0.56
SNHG1-223	ENST00000545440	TTLL13P	A6NNM8	815 aa		11.54	□□□□□ -0.56
SNHG1-223	ENST00000545440	HDGF	P51858	240 aa	Known RBP	11.53	□□□□□ -0.56
SNHG1-223	ENST00000545440	TOM1	O60784	492 aa		11.52	□□□□□ -0.57
SNHG1-223	ENST00000545440	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.52	□□□□□ -0.57	6e-32	■□□□□ 8.9
SNHG1-223	ENST00000545440	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.52	□□□□□ -0.57
SNHG1-223	ENST00000545440	ADAMTS13	Q76LX8	1427 aa		11.52	□□□□□ -0.57
SNHG1-223	ENST00000545440	GALR2	O43603	387 aa	Predicted RBP	11.51	□□□□□ -0.57
SNHG1-223	ENST00000545440	PPP1R15A	O75807	674 aa	Predicted RBP	11.51	□□□□□ -0.57
SNHG1-223	ENST00000545440		G3V3G9	751 aa		11.5	□□□□□ -0.57
SNHG1-223	ENST00000545440	KCNA6	P17658	529 aa		11.5	□□□□□ -0.57
SNHG1-223	ENST00000545440	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.5	□□□□□ -0.57
SNHG1-223	ENST00000545440	TRIM35	Q9UPQ4	493 aa		11.5	□□□□□ -0.57
SNHG1-223	ENST00000545440	PIK3R4	Q99570	1358 aa		11.5	□□□□□ -0.57
SNHG1-223	ENST00000545440	ROBO1	Q9Y6N7	1651 aa		11.49	□□□□□ -0.57
SNHG1-223	ENST00000545440	SLC26A8	Q96RN1	970 aa		11.49	□□□□□ -0.57
SNHG1-223	ENST00000545440	TRPC6	Q9Y210	931 aa		11.49	□□□□□ -0.57
SNHG1-223	ENST00000545440	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.49	□□□□□ -0.57
SNHG1-223	ENST00000545440	PDE4A	P27815	886 aa		11.48	□□□□□ -0.57
SNHG1-223	ENST00000545440	TRIM52	Q96A61	297 aa		11.48	□□□□□ -0.57
SNHG1-223	ENST00000545440	ACIN1	Q9UKV3	1341 aa	Known RBP	11.48	□□□□□ -0.57
SNHG1-223	ENST00000545440	TMEM94	Q12767	1356 aa		11.48	□□□□□ -0.57
SNHG1-223	ENST00000545440	PPP1R37	O75864	691 aa		11.47	□□□□□ -0.57
SNHG1-223	ENST00000545440	TBX22	Q9Y458	520 aa		11.47	□□□□□ -0.57
SNHG1-223	ENST00000545440	NALCN	Q8IZF0	1738 aa		11.46	□□□□□ -0.57
SNHG1-223	ENST00000545440	SETD5	Q9C0A6	1442 aa		11.46	□□□□□ -0.57
SNHG1-223	ENST00000545440	NCOA3	Q9Y6Q9	1424 aa		11.46	□□□□□ -0.57
SNHG1-223	ENST00000545440	CCDC144A	A2RUR9	1427 aa		11.45	□□□□□ -0.58
SNHG1-223	ENST00000545440	TULP1	O00294	542 aa	Predicted RBP	11.45	□□□□□ -0.58
SNHG1-223	ENST00000545440	PIP4K2B	P78356	416 aa		11.45	□□□□□ -0.58
SNHG1-223	ENST00000545440	MED1	Q15648	1581 aa	Predicted RBP	11.45	□□□□□ -0.58
SNHG1-223	ENST00000545440	KNDC1	Q76NI1	1749 aa		11.44	□□□□□ -0.58
SNHG1-223	ENST00000545440	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.44	□□□□□ -0.58
SNHG1-223	ENST00000545440	CADPS2	Q86UW7	1296 aa		11.44	□□□□□ -0.58
SNHG1-223	ENST00000545440	DCBLD2	Q96PD2	775 aa		11.44	□□□□□ -0.58
SNHG1-223	ENST00000545440	PHLPP1	O60346	1717 aa		11.43	□□□□□ -0.58
SNHG1-223	ENST00000545440	MSH6	P52701	1360 aa		11.43	□□□□□ -0.58
SNHG1-223	ENST00000545440	LAMC1	P11047	1609 aa		11.43	□□□□□ -0.58
SNHG1-223	ENST00000545440	ZNF326	Q5BKZ1	582 aa	Known RBP	11.43	□□□□□ -0.58
SNHG1-223	ENST00000545440	SPATA31E1	Q6ZUB1	1445 aa		11.43	□□□□□ -0.58
SNHG1-223	ENST00000545440	PRAG1	Q86YV5	1406 aa		11.43	□□□□□ -0.58
SNHG1-223	ENST00000545440	PTPRU	Q92729	1446 aa		11.43	□□□□□ -0.58
SNHG1-223	ENST00000545440	RAB3GAP2	Q9H2M9	1393 aa		11.42	□□□□□ -0.58
SNHG1-223	ENST00000545440	HSPA1L	P34931	641 aa		11.42	□□□□□ -0.58
SNHG1-223	ENST00000545440	IER5L	Q5T953	404 aa		11.42	□□□□□ -0.58
SNHG1-223	ENST00000545440	PROSER2	Q86WR7	435 aa	Predicted RBP	11.42	□□□□□ -0.58
SNHG1-223	ENST00000545440	FAM135B	Q49AJ0	1406 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 59 ms