RNA–Protein interactions for RNA: ENST00000545432.5

RTN3-214, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-214ENST00000545432 ZRANB1Q9UGI0 708 aa22.53■■□□□ 1.2
RTN3-214ENST00000545432 HFM1A2PYH4 1435 aa22.53■■□□□ 1.2
RTN3-214ENST00000545432 ITGAEP38570 1179 aa22.49■■□□□ 1.19
RTN3-214ENST00000545432 NPHP3Q7Z494 1330 aa22.49■■□□□ 1.19
RTN3-214ENST00000545432 GJD4Q96KN9 370 aaPredicted RBP22.48■■□□□ 1.19
RTN3-214ENST00000545432 PXDNQ92626 1479 aa22.47■■□□□ 1.19
RTN3-214ENST00000545432 KIF1BO60333 1816 aa22.44■■□□□ 1.18
RTN3-214ENST00000545432 ESCO1Q5FWF5 840 aa22.44■■□□□ 1.18
RTN3-214ENST00000545432 EP400Q96L91 3159 aa22.43■■□□□ 1.18
RTN3-214ENST00000545432 CDC42BPGQ6DT37 1551 aa22.43■■□□□ 1.18
RTN3-214ENST00000545432 NAIPQ13075 1403 aa22.43■■□□□ 1.18
RTN3-214ENST00000545432 FOXO3O43524 673 aa22.42■■□□□ 1.18
RTN3-214ENST00000545432 SLIT2O94813 1529 aa22.41■■□□□ 1.18
RTN3-214ENST00000545432 LRPPRCP42704 1394 aaKnown RBP22.4■■□□□ 1.18
RTN3-214ENST00000545432 UNC5CLQ8IV45 518 aa22.4■■□□□ 1.18
RTN3-214ENST00000545432 TECPR2O15040 1411 aa22.4■■□□□ 1.18
RTN3-214ENST00000545432 BLMP54132 1417 aaPredicted RBP22.38■■□□□ 1.17
RTN3-214ENST00000545432 SPATA31A3Q5VYP0 1347 aa22.36■■□□□ 1.17
RTN3-214ENST00000545432 ONECUT3O60422 494 aaPredicted RBP22.36■■□□□ 1.17
RTN3-214ENST00000545432 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.36■■□□□ 1.17
RTN3-214ENST00000545432 MARF1Q9Y4F3 1742 aaKnown RBP22.36■■□□□ 1.17
RTN3-214ENST00000545432 ABCC11Q96J66 1382 aa22.36■■□□□ 1.17
RTN3-214ENST00000545432 RALGAPBQ86X10 1494 aa22.35■■□□□ 1.17
RTN3-214ENST00000545432 RRBP1Q9P2E9 1410 aaKnown RBP22.34■■□□□ 1.17
RTN3-214ENST00000545432 XPCQ01831 940 aaPredicted RBP22.34■■□□□ 1.17
RTN3-214ENST00000545432 GLI3P10071 1580 aa22.33■■□□□ 1.17
RTN3-214ENST00000545432 PPLO60437 1756 aa22.33■■□□□ 1.17
RTN3-214ENST00000545432 WAPLQ7Z5K2 1190 aa22.33■■□□□ 1.17
RTN3-214ENST00000545432 ADGRF5Q8IZF2 1346 aa22.32■■□□□ 1.16
RTN3-214ENST00000545432 SIRT1Q96EB6 747 aa22.32■■□□□ 1.16
RTN3-214ENST00000545432 VPS72Q15906 364 aa22.3■■□□□ 1.16
RTN3-214ENST00000545432 SLC4A1APQ9BWU0 796 aaKnown RBP22.3■■□□□ 1.16
RTN3-214ENST00000545432 DEFB132Q7Z7B7 95 aa22.28■■□□□ 1.16
RTN3-214ENST00000545432 PLEKHH1Q9ULM0 1364 aa22.27■■□□□ 1.16
RTN3-214ENST00000545432 CCDC144AA2RUR9 1427 aa22.27■■□□□ 1.16
RTN3-214ENST00000545432 SPATA31E1Q6ZUB1 1445 aa22.27■■□□□ 1.16
RTN3-214ENST00000545432 KRT28Q7Z3Y7 464 aa22.27■■□□□ 1.16
RTN3-214ENST00000545432 SEPT12Q8IYM1 358 aa22.27■■□□□ 1.16
RTN3-214ENST00000545432 ANKRD30BQ9BXX2 1392 aa22.26■■□□□ 1.15
RTN3-214ENST00000545432 NUTM2FA1L443 756 aa22.25■■□□□ 1.15
RTN3-214ENST00000545432 PPARGC1BQ86YN6 1023 aaKnown RBP22.25■■□□□ 1.15
RTN3-214ENST00000545432 STK26Q9P289 416 aa22.24■■□□□ 1.15
RTN3-214ENST00000545432 USP32Q8NFA0 1604 aa22.24■■□□□ 1.15
RTN3-214ENST00000545432 TMEM132EQ6IEE7 984 aa22.22■■□□□ 1.15
RTN3-214ENST00000545432 KIF1AQ12756 1690 aa22.22■■□□□ 1.15
RTN3-214ENST00000545432 KNDC1Q76NI1 1749 aa22.21■■□□□ 1.15
RTN3-214ENST00000545432 FMN2Q9NZ56 1722 aa22.21■■□□□ 1.15
RTN3-214ENST00000545432 SBNO1A3KN83 1393 aa22.21■■□□□ 1.15
RTN3-214ENST00000545432 PIK3C2GO75747 1445 aa22.21■■□□□ 1.15
RTN3-214ENST00000545432 TNS3Q68CZ2 1445 aa22.21■■□□□ 1.15
RTN3-214ENST00000545432 YTHDC2Q9H6S0 1430 aaKnown RBP22.21■■□□□ 1.15
RTN3-214ENST00000545432 BRWD3Q6RI45 1802 aa22.2■■□□□ 1.14
RTN3-214ENST00000545432 PSME1Q06323 249 aa22.2■■□□□ 1.14
RTN3-214ENST00000545432 SF3B2Q13435 895 aaKnown RBP22.2■■□□□ 1.14
RTN3-214ENST00000545432 PHF8Q9UPP1 1060 aa22.2■■□□□ 1.14
RTN3-214ENST00000545432 LRP5O75197 1615 aa22.2■■□□□ 1.14
RTN3-214ENST00000545432 KRT27Q7Z3Y8 459 aa22.19■■□□□ 1.14
RTN3-214ENST00000545432 C14orf93Q9H972 538 aaKnown RBP22.18■■□□□ 1.14
RTN3-214ENST00000545432 FAM83GA6ND36 823 aa22.17■■□□□ 1.14
RTN3-214ENST00000545432 CABLES1Q8TDN4 633 aa22.17■■□□□ 1.14
RTN3-214ENST00000545432 RGL3Q3MIN7 710 aa22.16■■□□□ 1.14
RTN3-214ENST00000545432 NWD2Q9ULI1 1742 aa22.16■■□□□ 1.14
RTN3-214ENST00000545432 NRXN1Q9ULB1 1477 aa22.15■■□□□ 1.14
RTN3-214ENST00000545432 IFT172Q9UG01 1749 aa22.14■■□□□ 1.14
RTN3-214ENST00000545432 ARHGEF10O15013 1369 aa22.14■■□□□ 1.14
RTN3-214ENST00000545432 HRCP23327 699 aa22.13■■□□□ 1.13
RTN3-214ENST00000545432 BAG6P46379 1132 aa22.11■■□□□ 1.13
RTN3-214ENST00000545432 HAP1P54257 671 aaPredicted RBP22.1■■□□□ 1.13
RTN3-214ENST00000545432 MPHOSPH9Q99550 1183 aa22.1■■□□□ 1.13
RTN3-214ENST00000545432 ANKARQ7Z5J8 1434 aa22.09■■□□□ 1.13
RTN3-214ENST00000545432 PLCH1Q4KWH8 1693 aa22.09■■□□□ 1.13
RTN3-214ENST00000545432 DHX57Q6P158 1386 aaKnown RBP22.09■■□□□ 1.13
RTN3-214ENST00000545432 DISP2A7MBM2 1401 aa22.07■■□□□ 1.12
RTN3-214ENST00000545432 CCDC9Q9Y3X0 531 aaKnown RBP22.07■■□□□ 1.12
RTN3-214ENST00000545432 ABCA3Q99758 1704 aa22.06■■□□□ 1.12
RTN3-214ENST00000545432 CFAP70Q5T0N1 1121 aa22.06■■□□□ 1.12
RTN3-214ENST00000545432 RGPD8O14715 1765 aaPredicted RBP22.05■■□□□ 1.12
RTN3-214ENST00000545432 PSDA5PKW4 1024 aaPredicted RBP22.05■■□□□ 1.12
RTN3-214ENST00000545432 FAM98CQ17RN3 349 aaKnown RBP22.05■■□□□ 1.12
RTN3-214ENST00000545432 PRAM1Q96QH2 718 aa22.04■■□□□ 1.12
RTN3-214ENST00000545432 BTG4Q9NY30 223 aa22.04■■□□□ 1.12
RTN3-214ENST00000545432 SPATA31A5Q5VU36 1347 aa22.04■■□□□ 1.12
RTN3-214ENST00000545432 SPATA31A7Q8IWB4 1347 aa22.04■■□□□ 1.12
RTN3-214ENST00000545432 DLC1Q96QB1 1528 aa22.03■■□□□ 1.12
RTN3-214ENST00000545432 NRAPQ86VF7 1730 aa22.03■■□□□ 1.12
RTN3-214ENST00000545432 EN1Q05925 392 aaPredicted RBP22.02■■□□□ 1.12
RTN3-214ENST00000545432 LMOD2Q6P5Q4 547 aa22.02■■□□□ 1.12
RTN3-214ENST00000545432 PMFBP1Q8TBY8 1022 aa22.02■■□□□ 1.12
RTN3-214ENST00000545432 TRPM3Q9HCF6 1732 aaPredicted RBP21.99■■□□□ 1.11
RTN3-214ENST00000545432 ADGRB2O60241 1585 aa21.99■■□□□ 1.11
RTN3-214ENST00000545432 ACIN1Q9UKV3 1341 aaKnown RBP21.98■■□□□ 1.11
RTN3-214ENST00000545432 COL14A1Q05707 1796 aaKnown RBP21.97■■□□□ 1.11
RTN3-214ENST00000545432 SAFB2Q14151 953 aaKnown RBP eCLIP21.97■■□□□ 1.111e-7■■■■□ 23.5
RTN3-214ENST00000545432 CAMKK2Q96RR4 588 aa21.97■■□□□ 1.11
RTN3-214ENST00000545432 PRR36Q9H6K5 1346 aa21.97■■□□□ 1.11
RTN3-214ENST00000545432 ALS2Q96Q42 1657 aa21.97■■□□□ 1.11
RTN3-214ENST00000545432 THSD7AQ9UPZ6 1657 aa21.96■■□□□ 1.11
RTN3-214ENST00000545432 R3HDM1Q15032 1099 aaKnown RBP21.96■■□□□ 1.11
RTN3-214ENST00000545432 GPRASP1Q5JY77 1395 aa21.96■■□□□ 1.11
RTN3-214ENST00000545432 PLEKHG5O94827 1062 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms