RNA–Protein interactions for RNA: ENST00000545432.5

RTN3-214, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-214ENST00000545432 NISCHQ9Y2I1 1504 aa37.8■■■■□ 3.64
RTN3-214ENST00000545432 ABCC9O60706 1549 aa34.46■■■■□ 3.11
RTN3-214ENST00000545432 CCDC180Q9P1Z9 1646 aa34.04■■■■□ 3.04
RTN3-214ENST00000545432 DNAJC5BQ9UF47 199 aa32.92■■■□□ 2.86
RTN3-214ENST00000545432 RB1CC1Q8TDY2 1594 aa32.63■■■□□ 2.81
RTN3-214ENST00000545432 NACADO15069 1562 aa32.36■■■□□ 2.77
RTN3-214ENST00000545432 PABPN1Q86U42 306 aaKnown RBP eCLIP32.05■■■□□ 2.72
RTN3-214ENST00000545432 DCAF8L2P0C7V8 631 aa31.94■■■□□ 2.7
RTN3-214ENST00000545432 MYO15BQ96JP2 1530 aa31.9■■■□□ 2.7
RTN3-214ENST00000545432 UNC13AQ9UPW8 1703 aa31.79■■■□□ 2.68
RTN3-214ENST00000545432 BICRAQ9NZM4 1560 aa31.77■■■□□ 2.68
RTN3-214ENST00000545432 SHROOM4Q9ULL8 1493 aa31.37■■■□□ 2.61
RTN3-214ENST00000545432 DCAF1Q9Y4B6 1507 aa31.29■■■□□ 2.6
RTN3-214ENST00000545432 ZCCHC6Q5VYS8 1495 aaKnown RBP31.22■■■□□ 2.59
RTN3-214ENST00000545432 CECR2Q9BXF3 1484 aa31.15■■■□□ 2.58
RTN3-214ENST00000545432 CC2D2AQ9P2K1 1620 aa31.13■■■□□ 2.57
RTN3-214ENST00000545432 EIF4G1Q04637 1599 aaKnown RBP30.98■■■□□ 2.55
RTN3-214ENST00000545432 SCRIBQ14160 1630 aa30.87■■■□□ 2.53
RTN3-214ENST00000545432 DNAJC5Q9H3Z4 198 aa30.59■■■□□ 2.49
RTN3-214ENST00000545432 CUX2O14529 1486 aa29.99■■■□□ 2.39
RTN3-214ENST00000545432 NCAPD3P42695 1498 aa29.98■■■□□ 2.39
RTN3-214ENST00000545432 ERCC6Q03468 1493 aa29.75■■■□□ 2.35
RTN3-214ENST00000545432 ATAD2BQ9ULI0 1458 aa29.74■■■□□ 2.35
RTN3-214ENST00000545432 HMGXB3Q12766 1538 aa29.61■■■□□ 2.33
RTN3-214ENST00000545432 SMARCA2P51531 1590 aa29.59■■■□□ 2.33
RTN3-214ENST00000545432 SMARCA4P51532 1647 aa29.51■■■□□ 2.31
RTN3-214ENST00000545432 NESP48681 1621 aa29.5■■■□□ 2.31
RTN3-214ENST00000545432 PEG3Q9GZU2 1588 aa29.35■■■□□ 2.29
RTN3-214ENST00000545432 BAZ1BQ9UIG0 1483 aaKnown RBP29.34■■■□□ 2.29
RTN3-214ENST00000545432 BAZ1AQ9NRL2 1556 aaPredicted RBP29.33■■■□□ 2.29
RTN3-214ENST00000545432 THOC2Q8NI27 1593 aaKnown RBP29.29■■■□□ 2.28
RTN3-214ENST00000545432 LAMC3Q9Y6N6 1575 aa29.25■■■□□ 2.27
RTN3-214ENST00000545432 PDS5BQ9NTI5 1447 aa29.13■■■□□ 2.25
RTN3-214ENST00000545432 MROH2BQ7Z745 1585 aa29.09■■■□□ 2.25
RTN3-214ENST00000545432 KIF21AQ7Z4S6 1674 aa29■■■□□ 2.23
RTN3-214ENST00000545432 CADPSQ9ULU8 1353 aa29■■■□□ 2.23
RTN3-214ENST00000545432 MRC2Q9UBG0 1479 aa28.87■■■□□ 2.21
RTN3-214ENST00000545432 WDR62O43379 1518 aa28.83■■■□□ 2.21
RTN3-214ENST00000545432 TRIM41Q8WV44 630 aa28.82■■■□□ 2.2
RTN3-214ENST00000545432 CEP164Q9UPV0 1460 aa28.63■■■□□ 2.17
RTN3-214ENST00000545432 WIZO95785 1651 aa28.63■■■□□ 2.17
RTN3-214ENST00000545432 FANCD2Q9BXW9 1451 aa28.59■■■□□ 2.17
RTN3-214ENST00000545432 CFTRP13569 1480 aa28.58■■■□□ 2.17
RTN3-214ENST00000545432 OSCARQ8IYS5 282 aa28.57■■■□□ 2.16
RTN3-214ENST00000545432 URB2Q14146 1524 aaKnown RBP28.4■■■□□ 2.14
RTN3-214ENST00000545432 RSF1Q96T23 1441 aaPredicted RBP28.37■■■□□ 2.13
RTN3-214ENST00000545432 TOP2AP11388 1531 aaKnown RBP28.3■■■□□ 2.12
RTN3-214ENST00000545432 IFT140Q96RY7 1462 aa28.15■■■□□ 2.1
RTN3-214ENST00000545432 RIMBP3CA6NJZ7 1639 aa28.12■■■□□ 2.09
RTN3-214ENST00000545432 RIMBP3BA6NNM3 1639 aa28.12■■■□□ 2.09
RTN3-214ENST00000545432 RIMBP3Q9UFD9 1639 aa28.12■■■□□ 2.09
RTN3-214ENST00000545432 ZNF608Q9ULD9 1512 aaPredicted RBP28.11■■■□□ 2.09
RTN3-214ENST00000545432 ARHGEF11O15085 1522 aa28.03■■■□□ 2.08
RTN3-214ENST00000545432 CCDC88BA6NC98 1476 aa28.02■■■□□ 2.08
RTN3-214ENST00000545432 PRDM2Q13029 1718 aa28.02■■■□□ 2.08
RTN3-214ENST00000545432 TOPBP1Q92547 1522 aa28■■■□□ 2.07
RTN3-214ENST00000545432 ABCC8Q09428 1581 aa27.96■■■□□ 2.07
RTN3-214ENST00000545432 CYB5RLQ6IPT4 315 aa27.86■■■□□ 2.05
RTN3-214ENST00000545432 EIF4G3O43432 1585 aaKnown RBP27.84■■■□□ 2.05
RTN3-214ENST00000545432 DNMBPQ6XZF7 1577 aa27.82■■■□□ 2.04
RTN3-214ENST00000545432 AQRO60306 1485 aaKnown RBP eCLIP27.8■■■□□ 2.04
RTN3-214ENST00000545432 TARBP1Q13395 1621 aaKnown RBP27.79■■■□□ 2.04
RTN3-214ENST00000545432 ARAP1Q96P48 1450 aa27.75■■■□□ 2.03
RTN3-214ENST00000545432 POLA1P09884 1462 aaPredicted RBP27.7■■■□□ 2.02
RTN3-214ENST00000545432 CHD1O14646 1710 aa27.67■■■□□ 2.02
RTN3-214ENST00000545432 TRHP20396 242 aaPredicted RBP27.61■■■□□ 2.01
RTN3-214ENST00000545432 FBLN2P98095 1184 aa27.61■■■□□ 2.01
RTN3-214ENST00000545432 RAD54L2Q9Y4B4 1467 aa27.57■■■□□ 2
RTN3-214ENST00000545432 SOGA1O94964 1423 aa27.57■■■□□ 2
RTN3-214ENST00000545432 TDRD9Q8NDG6 1382 aaKnown RBP27.56■■■□□ 2
RTN3-214ENST00000545432 WDR97A6NE52 1622 aa27.5■■□□□ 1.99
RTN3-214ENST00000545432 CLASP1Q7Z460 1538 aa27.5■■□□□ 1.99
RTN3-214ENST00000545432 SNAPC4Q5SXM2 1469 aa27.46■■□□□ 1.99
RTN3-214ENST00000545432 CHMP7Q8WUX9 453 aaPredicted RBP27.43■■□□□ 1.98
RTN3-214ENST00000545432 MAGI1Q96QZ7 1491 aaPredicted RBP27.43■■□□□ 1.98
RTN3-214ENST00000545432 FGD5Q6ZNL6 1462 aa27.42■■□□□ 1.98
RTN3-214ENST00000545432 GRIN2BQ13224 1484 aa27.38■■□□□ 1.97
RTN3-214ENST00000545432 SYNJ1O43426 1573 aa27.37■■□□□ 1.97
RTN3-214ENST00000545432 SYNJ2O15056 1496 aa27.35■■□□□ 1.97
RTN3-214ENST00000545432 CUX1P39880 1505 aa27.34■■□□□ 1.97
RTN3-214ENST00000545432 GAPVD1Q14C86 1478 aa27.22■■□□□ 1.95
RTN3-214ENST00000545432 ABCA10Q8WWZ4 1543 aa27.15■■□□□ 1.94
RTN3-214ENST00000545432 AEBP2Q6ZN18 517 aaPredicted RBP27.14■■□□□ 1.94
RTN3-214ENST00000545432 ABCA5Q8WWZ7 1642 aa27.08■■□□□ 1.93
RTN3-214ENST00000545432 PBRM1Q86U86 1689 aa27.08■■□□□ 1.92
RTN3-214ENST00000545432 NUP160Q12769 1436 aa27.01■■□□□ 1.91
RTN3-214ENST00000545432 GRIN2AQ12879 1464 aa27■■□□□ 1.91
RTN3-214ENST00000545432 ERCC6L2Q5T890 1561 aa26.98■■□□□ 1.91
RTN3-214ENST00000545432 WRNQ14191 1432 aaPredicted RBP eCLIP26.92■■□□□ 1.9
RTN3-214ENST00000545432 CEP170Q5SW79 1584 aa26.92■■□□□ 1.9
RTN3-214ENST00000545432 SHROOM2Q13796 1616 aa26.88■■□□□ 1.89
RTN3-214ENST00000545432 FHAD1B1AJZ9 1412 aa26.88■■□□□ 1.89
RTN3-214ENST00000545432 ADAMTS12P58397 1594 aa26.88■■□□□ 1.89
RTN3-214ENST00000545432 ERICH3Q5RHP9 1530 aa26.78■■□□□ 1.88
RTN3-214ENST00000545432 TOP2BQ02880 1626 aa26.77■■□□□ 1.88
RTN3-214ENST00000545432 BIVM-ERCC5R4GMW8 1640 aa26.75■■□□□ 1.87
RTN3-214ENST00000545432 JPH4Q96JJ6 628 aa26.73■■□□□ 1.87
RTN3-214ENST00000545432 PRG4Q92954 1404 aaPredicted RBP26.72■■□□□ 1.87
RTN3-214ENST00000545432 KIF13AQ9H1H9 1805 aa26.68■■□□□ 1.86
RTN3-214ENST00000545432 ABCC10Q5T3U5 1492 aa26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms