RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 NPHP4O75161 1426 aaPredicted RBP41.8■■■■■ 4.28
CCM2-219ENST00000544363 ROBO2Q9HCK4 1378 aa41.8■■■■■ 4.28
CCM2-219ENST00000544363 AMOTL2Q9Y2J4 779 aa41.8■■■■■ 4.28
CCM2-219ENST00000544363 PER1O15534 1290 aaPredicted RBP41.78■■■■■ 4.28
CCM2-219ENST00000544363 PRKRIP1Q9H875 184 aaPredicted RBP41.78■■■■■ 4.28
CCM2-219ENST00000544363 NCKAP5LQ9HCH0 1330 aa41.76■■■■■ 4.28
CCM2-219ENST00000544363 CCER2I3L3R5 266 aa41.74■■■■■ 4.27
CCM2-219ENST00000544363 CABP2Q9NPB3 220 aa41.73■■■■■ 4.27
CCM2-219ENST00000544363 PTCH1Q13635 1447 aa41.72■■■■■ 4.27
CCM2-219ENST00000544363 XRN1Q8IZH2 1706 aaKnown RBP41.72■■■■■ 4.27
CCM2-219ENST00000544363 SRPK2P78362 688 aaKnown RBP41.71■■■■■ 4.27
CCM2-219ENST00000544363 CDK19Q9BWU1 502 aa41.69■■■■■ 4.27
CCM2-219ENST00000544363 ATAD2Q6PL18 1390 aa41.66■■■■■ 4.26
CCM2-219ENST00000544363 TMC1Q8TDI8 760 aa41.66■■■■■ 4.26
CCM2-219ENST00000544363 CHD2O14647 1828 aaKnown RBP41.64■■■■■ 4.26
CCM2-219ENST00000544363 SLC12A5Q9H2X9 1139 aa41.64■■■■■ 4.26
CCM2-219ENST00000544363 LMTK3Q96Q04 1460 aa41.63■■■■■ 4.25
CCM2-219ENST00000544363 WASLO00401 505 aaPredicted RBP41.62■■■■■ 4.25
CCM2-219ENST00000544363 NINLQ9Y2I6 1382 aa41.62■■■■■ 4.25
CCM2-219ENST00000544363 KNSTRNQ9Y448 316 aa41.62■■■■■ 4.25
CCM2-219ENST00000544363 KCNA6P17658 529 aa41.61■■■■■ 4.25
CCM2-219ENST00000544363 SIPA1L2Q9P2F8 1722 aaPredicted RBP41.6■■■■■ 4.25
CCM2-219ENST00000544363 HSPA2P54652 639 aa41.6■■■■■ 4.25
CCM2-219ENST00000544363 KTN1Q86UP2 1357 aaKnown RBP41.59■■■■■ 4.25
CCM2-219ENST00000544363 ADGRB2O60241 1585 aa41.59■■■■■ 4.25
CCM2-219ENST00000544363 CNGB1Q14028 1251 aaPredicted RBP41.58■■■■■ 4.25
CCM2-219ENST00000544363 RALBP1Q15311 655 aa41.55■■■■■ 4.24
CCM2-219ENST00000544363 CARD14Q9BXL6 1004 aa41.54■■■■■ 4.24
CCM2-219ENST00000544363 ANKRD36BQ8N2N9 1353 aa41.51■■■■■ 4.24
CCM2-219ENST00000544363 AMER1Q5JTC6 1135 aaPredicted RBP41.51■■■■■ 4.23
CCM2-219ENST00000544363 PARD3Q8TEW0 1356 aa41.49■■■■■ 4.23
CCM2-219ENST00000544363 NPC1L1Q9UHC9 1359 aa41.49■■■■■ 4.23
CCM2-219ENST00000544363 CC2D1BQ5T0F9 858 aaKnown RBP41.48■■■■■ 4.23
CCM2-219ENST00000544363 NWD1Q149M9 1564 aa41.44■■■■■ 4.23
CCM2-219ENST00000544363 NUDT16Q96DE0 195 aaKnown RBP41.44■■■■■ 4.22
CCM2-219ENST00000544363 NSD3Q9BZ95 1437 aa41.43■■■■■ 4.22
CCM2-219ENST00000544363 CABP1Q9NZU7 370 aa41.43■■■■■ 4.22
CCM2-219ENST00000544363 TERF2IPQ9NYB0 399 aa41.42■■■■■ 4.22
CCM2-219ENST00000544363 MYBBP1AQ9BQG0 1328 aaKnown RBP41.4■■■■■ 4.22
CCM2-219ENST00000544363 A0A1W2PP64 1363 aa41.4■■■■■ 4.22
CCM2-219ENST00000544363 CD163L1Q9NR16 1453 aa41.39■■■■■ 4.22
CCM2-219ENST00000544363 ATP7BP35670 1465 aa41.39■■■■■ 4.22
CCM2-219ENST00000544363 CCDC61Q9Y6R9 512 aa41.38■■■■■ 4.21
CCM2-219ENST00000544363 STRCQ7RTU9 1775 aa41.37■■■■■ 4.21
CCM2-219ENST00000544363 CCDC184Q52MB2 194 aa41.37■■■■■ 4.21
CCM2-219ENST00000544363 PPIP5K1Q6PFW1 1433 aa41.36■■■■■ 4.21
CCM2-219ENST00000544363 PRR36Q9H6K5 1346 aa41.36■■■■■ 4.21
CCM2-219ENST00000544363 USP32Q8NFA0 1604 aa41.36■■■■■ 4.21
CCM2-219ENST00000544363 HDGFL2Q7Z4V5 671 aaPredicted RBP41.36■■■■■ 4.21
CCM2-219ENST00000544363 YTHDC1Q96MU7 727 aaKnown RBP41.35■■■■■ 4.21
CCM2-219ENST00000544363 MRS2Q9HD23 443 aa41.34■■■■■ 4.21
CCM2-219ENST00000544363 CGNL1Q0VF96 1302 aa41.3■■■■■ 4.2
CCM2-219ENST00000544363 NKTRP30414 1462 aaKnown RBP41.3■■■■■ 4.2
CCM2-219ENST00000544363 NALCNQ8IZF0 1738 aa41.28■■■■■ 4.2
CCM2-219ENST00000544363 NLRP13Q86W25 1043 aa41.27■■■■■ 4.2
CCM2-219ENST00000544363 TOPAZ1Q8N9V7 1692 aa41.27■■■■■ 4.2
CCM2-219ENST00000544363 BRD4O60885 1362 aaPredicted RBP41.27■■■■■ 4.2
CCM2-219ENST00000544363 CPSF1Q10570 1443 aaKnown RBP41.26■■■■■ 4.2
CCM2-219ENST00000544363 ADGRL3Q9HAR2 1447 aa41.26■■■■■ 4.2
CCM2-219ENST00000544363 CDC42BPGQ6DT37 1551 aa41.25■■■■■ 4.19
CCM2-219ENST00000544363 NUTM2FA1L443 756 aa41.24■■■■■ 4.19
CCM2-219ENST00000544363 RBM33Q96EV2 1170 aaKnown RBP41.24■■■■■ 4.19
CCM2-219ENST00000544363 PROSER2Q86WR7 435 aaPredicted RBP41.23■■■■■ 4.19
CCM2-219ENST00000544363 NSD2O96028 1365 aa41.22■■■■■ 4.19
CCM2-219ENST00000544363 FMN2Q9NZ56 1722 aa41.22■■■■■ 4.19
CCM2-219ENST00000544363 ANKARQ7Z5J8 1434 aa41.22■■■■■ 4.19
CCM2-219ENST00000544363 PLEKHG3A1L390 1219 aa41.21■■■■■ 4.19
CCM2-219ENST00000544363 STRCP1A6NGW2 1772 aa41.19■■■■■ 4.18
CCM2-219ENST00000544363 ITSN1Q15811 1721 aa41.18■■■■■ 4.18
CCM2-219ENST00000544363 PPP2R1AP30153 589 aa41.17■■■■■ 4.18
CCM2-219ENST00000544363 ZNF692Q9BU19 519 aaPredicted RBP41.17■■■■■ 4.18
CCM2-219ENST00000544363 AKAP12Q02952 1782 aa41.15■■■■■ 4.18
CCM2-219ENST00000544363 C14orf37Q86TY3 774 aa41.15■■■■■ 4.18
CCM2-219ENST00000544363 MORC1Q86VD1 984 aa41.14■■■■■ 4.18
CCM2-219ENST00000544363 EDC4Q6P2E9 1401 aaKnown RBP41.13■■■■■ 4.18
CCM2-219ENST00000544363 MON2Q7Z3U7 1717 aa41.12■■■■■ 4.17
CCM2-219ENST00000544363 RGPD8O14715 1765 aaPredicted RBP41.12■■■■■ 4.17
CCM2-219ENST00000544363 ACEP12821 1306 aa41.11■■■■■ 4.17
CCM2-219ENST00000544363 FYB1O15117 783 aa41.1■■■■■ 4.17
CCM2-219ENST00000544363 NCOA3Q9Y6Q9 1424 aa41.09■■■■■ 4.17
CCM2-219ENST00000544363 FAM9BQ8IZU0 186 aa41.07■■■■■ 4.17
CCM2-219ENST00000544363 TMEM94Q12767 1356 aa41.06■■■■■ 4.16
CCM2-219ENST00000544363 PNISRQ8TF01 805 aaKnown RBP41.06■■■■■ 4.16
CCM2-219ENST00000544363 KIF20BQ96Q89 1820 aa41.05■■■■■ 4.16
CCM2-219ENST00000544363 DMRT2Q9Y5R5 561 aa41.05■■■■■ 4.16
CCM2-219ENST00000544363 SUGP2Q8IX01 1082 aaKnown RBP eCLIP41.04■■■■■ 4.16
CCM2-219ENST00000544363 GGNBP2Q9H3C7 697 aa41.04■■■■■ 4.16
CCM2-219ENST00000544363 C19orf44Q9H6X5 657 aa41.04■■■■■ 4.16
CCM2-219ENST00000544363 ANKRD26Q9UPS8 1709 aa41.04■■■■■ 4.16
CCM2-219ENST00000544363 POLR3AO14802 1390 aaPredicted RBP41.04■■■■■ 4.16
CCM2-219ENST00000544363 PMFBP1Q8TBY8 1022 aa41.04■■■■■ 4.16
CCM2-219ENST00000544363 USP6P35125 1406 aa41■■■■■ 4.15
CCM2-219ENST00000544363 NGDNQ8NEJ9 315 aaKnown RBP41■■■■■ 4.15
CCM2-219ENST00000544363 CENPBP07199 599 aaPredicted RBP40.98■■■■■ 4.15
CCM2-219ENST00000544363 NRKQ7Z2Y5 1582 aa40.97■■■■■ 4.15
CCM2-219ENST00000544363 ZNF335Q9H4Z2 1342 aaPredicted RBP40.96■■■■■ 4.15
CCM2-219ENST00000544363 TNNT2P45379 298 aaPredicted RBP40.96■■■■■ 4.15
CCM2-219ENST00000544363 TTC21BQ7Z4L5 1316 aa40.94■■■■■ 4.14
CCM2-219ENST00000544363 DCCP43146 1447 aa40.94■■■■■ 4.14
CCM2-219ENST00000544363 PHF8Q9UPP1 1060 aa40.93■■■■■ 4.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms