RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 IDI1Q13907 227 aa13.07□□□□□ -0.32
SS18-205ENST00000542420 IRX6P78412 446 aaPredicted RBP13.06□□□□□ -0.32
SS18-205ENST00000542420 RBM19Q9Y4C8 960 aaKnown RBP13.06□□□□□ -0.32
SS18-205ENST00000542420 NSD3Q9BZ95 1437 aa13.06□□□□□ -0.32
SS18-205ENST00000542420 ADAMTS8Q9UP79 889 aa13.05□□□□□ -0.32
SS18-205ENST00000542420 CGNL1Q0VF96 1302 aa13.05□□□□□ -0.32
SS18-205ENST00000542420 ATAD2Q6PL18 1390 aa13.05□□□□□ -0.32
SS18-205ENST00000542420 CARD14Q9BXL6 1004 aa13.05□□□□□ -0.32
SS18-205ENST00000542420 FANCIQ9NVI1 1328 aa13.04□□□□□ -0.32
SS18-205ENST00000542420 KIF20BQ96Q89 1820 aa13.04□□□□□ -0.32
SS18-205ENST00000542420 YTHDC2Q9H6S0 1430 aaKnown RBP13.04□□□□□ -0.32
SS18-205ENST00000542420 A2ML1A8K2U0 1454 aa13.04□□□□□ -0.32
SS18-205ENST00000542420 TRAK1Q9UPV9 953 aa13.04□□□□□ -0.32
SS18-205ENST00000542420 TRMT2AQ8IZ69 625 aaKnown RBP13.02□□□□□ -0.33
SS18-205ENST00000542420 PLPPR3Q6T4P5 718 aa13.01□□□□□ -0.33
SS18-205ENST00000542420 MSH5O43196 834 aa13.01□□□□□ -0.33
SS18-205ENST00000542420 GOLGA2Q08379 1002 aa13.01□□□□□ -0.33
SS18-205ENST00000542420 CCDC136Q96JN2 1154 aa13.01□□□□□ -0.33
SS18-205ENST00000542420 ABCC11Q96J66 1382 aa13.01□□□□□ -0.33
SS18-205ENST00000542420 PLEKHH1Q9ULM0 1364 aa13.01□□□□□ -0.33
SS18-205ENST00000542420 IQSEC2Q5JU85 1478 aa13□□□□□ -0.33
SS18-205ENST00000542420 B4GALNT3Q6L9W6 998 aa13□□□□□ -0.33
SS18-205ENST00000542420 NRXN3Q9Y4C0 1643 aa13□□□□□ -0.33
SS18-205ENST00000542420 ADGRB2O60241 1585 aa13□□□□□ -0.33
SS18-205ENST00000542420 NKTRP30414 1462 aaKnown RBP12.98□□□□□ -0.33
SS18-205ENST00000542420 ATP7BP35670 1465 aa12.98□□□□□ -0.33
SS18-205ENST00000542420 SLFN5Q08AF3 891 aa12.98□□□□□ -0.33
SS18-205ENST00000542420 DUSP27Q5VZP5 1158 aa12.98□□□□□ -0.33
SS18-205ENST00000542420 TMEM132EQ6IEE7 984 aa12.98□□□□□ -0.33
SS18-205ENST00000542420 MORC1Q86VD1 984 aa12.98□□□□□ -0.33
SS18-205ENST00000542420 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.98□□□□□ -0.33
SS18-205ENST00000542420 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.98□□□□□ -0.33
SS18-205ENST00000542420 RIMS2Q9UQ26 1411 aa12.98□□□□□ -0.33
SS18-205ENST00000542420 E9PSI1 815 aa12.97□□□□□ -0.33
SS18-205ENST00000542420 SIRT1Q96EB6 747 aa12.97□□□□□ -0.33
SS18-205ENST00000542420 CFAP53Q96M91 514 aa12.97□□□□□ -0.33
SS18-205ENST00000542420 CPS1P31327 1500 aa12.97□□□□□ -0.33
SS18-205ENST00000542420 CDCA7LQ96GN5 454 aa12.96□□□□□ -0.33
SS18-205ENST00000542420 TECPR2O15040 1411 aa12.96□□□□□ -0.33
SS18-205ENST00000542420 CDC42BPGQ6DT37 1551 aa12.96□□□□□ -0.33
SS18-205ENST00000542420 UBR1Q8IWV7 1749 aa12.96□□□□□ -0.33
SS18-205ENST00000542420 CCDC27Q2M243 656 aa12.96□□□□□ -0.34
SS18-205ENST00000542420 SLC12A5Q9H2X9 1139 aa12.95□□□□□ -0.34
SS18-205ENST00000542420 FAM135BQ49AJ0 1406 aa12.95□□□□□ -0.34
SS18-205ENST00000542420 CD163L1Q9NR16 1453 aa12.95□□□□□ -0.34
SS18-205ENST00000542420 HDGFP51858 240 aaKnown RBP12.94□□□□□ -0.34
SS18-205ENST00000542420 TERF2IPQ9NYB0 399 aa12.94□□□□□ -0.34
SS18-205ENST00000542420 NLRP1Q9C000 1473 aa12.94□□□□□ -0.34
SS18-205ENST00000542420 A0A1W2PP64 1363 aa12.93□□□□□ -0.34
SS18-205ENST00000542420 RUNDC1Q96C34 613 aa12.93□□□□□ -0.34
SS18-205ENST00000542420 MON2Q7Z3U7 1717 aa12.93□□□□□ -0.34
SS18-205ENST00000542420 AKAP12Q02952 1782 aa12.93□□□□□ -0.34
SS18-205ENST00000542420 COL3A1P02461 1466 aaPredicted RBP12.93□□□□□ -0.34
SS18-205ENST00000542420 TCERG1O14776 1098 aaKnown RBP12.92□□□□□ -0.34
SS18-205ENST00000542420 MS4A1P11836 297 aa12.92□□□□□ -0.34
SS18-205ENST00000542420 WDR63Q8IWG1 891 aa12.91□□□□□ -0.34
SS18-205ENST00000542420 ANO8Q9HCE9 1232 aaPredicted RBP12.91□□□□□ -0.34
SS18-205ENST00000542420 ITSN1Q15811 1721 aa12.91□□□□□ -0.34
SS18-205ENST00000542420 FBXO31Q5XUX0 539 aaPredicted RBP12.91□□□□□ -0.34
SS18-205ENST00000542420 EXOC6Q8TAG9 804 aa12.91□□□□□ -0.34
SS18-205ENST00000542420 STAG3Q9UJ98 1225 aa12.91□□□□□ -0.34
SS18-205ENST00000542420 ZMYM3Q14202 1370 aa12.91□□□□□ -0.34
SS18-205ENST00000542420 AAMPQ13685 434 aa12.9□□□□□ -0.34
SS18-205ENST00000542420 SALL2Q9Y467 1007 aaPredicted RBP12.9□□□□□ -0.34
SS18-205ENST00000542420 APAF1O14727 1248 aa12.9□□□□□ -0.34
SS18-205ENST00000542420 HDGFL2Q7Z4V5 671 aaPredicted RBP12.89□□□□□ -0.35
SS18-205ENST00000542420 POGKQ9P215 609 aa12.89□□□□□ -0.35
SS18-205ENST00000542420 TNRQ92752 1358 aa12.89□□□□□ -0.35
SS18-205ENST00000542420 PRAM1Q96QH2 718 aa12.89□□□□□ -0.35
SS18-205ENST00000542420 PNPLA6Q8IY17 1366 aa12.89□□□□□ -0.35
SS18-205ENST00000542420 CT47B1P0C2W7 299 aaPredicted RBP12.88□□□□□ -0.35
SS18-205ENST00000542420 SRPK2P78362 688 aaKnown RBP12.88□□□□□ -0.35
SS18-205ENST00000542420 PNNQ9H307 717 aaKnown RBP12.88□□□□□ -0.35
SS18-205ENST00000542420 CABP2Q9NPB3 220 aa12.88□□□□□ -0.35
SS18-205ENST00000542420 DIP2AQ14689 1571 aa12.87□□□□□ -0.35
SS18-205ENST00000542420 TOPAZ1Q8N9V7 1692 aa12.87□□□□□ -0.35
SS18-205ENST00000542420 WWC1Q8IX03 1113 aa12.87□□□□□ -0.35
SS18-205ENST00000542420 MTHFSP49914 203 aa12.87□□□□□ -0.35
SS18-205ENST00000542420 RIMS1Q86UR5 1692 aaKnown RBP12.87□□□□□ -0.35
SS18-205ENST00000542420 ESF1Q9H501 851 aaKnown RBP12.87□□□□□ -0.35
SS18-205ENST00000542420 CPSF1Q10570 1443 aaKnown RBP12.86□□□□□ -0.35
SS18-205ENST00000542420 EDC4Q6P2E9 1401 aaKnown RBP12.86□□□□□ -0.35
SS18-205ENST00000542420 PDE3AQ14432 1141 aa12.86□□□□□ -0.35
SS18-205ENST00000542420 C3P01024 1663 aa12.86□□□□□ -0.35
SS18-205ENST00000542420 NUTM2DQ5VT03 806 aaPredicted RBP12.85□□□□□ -0.35
SS18-205ENST00000542420 SLIT1O75093 1534 aa12.85□□□□□ -0.35
SS18-205ENST00000542420 MAP2P11137 1827 aaKnown RBP12.85□□□□□ -0.35
SS18-205ENST00000542420 CCDC146Q8IYE0 955 aa12.85□□□□□ -0.35
SS18-205ENST00000542420 CRBNQ96SW2 442 aa12.85□□□□□ -0.35
SS18-205ENST00000542420 TMEM2Q9UHN6 1383 aa12.84□□□□□ -0.35
SS18-205ENST00000542420 CENPQQ7L2Z9 268 aaPredicted RBP12.84□□□□□ -0.35
SS18-205ENST00000542420 CDK19Q9BWU1 502 aa12.84□□□□□ -0.35
SS18-205ENST00000542420 PLEKHG1Q9ULL1 1385 aa12.84□□□□□ -0.35
SS18-205ENST00000542420 IL16Q14005 1332 aa12.84□□□□□ -0.35
SS18-205ENST00000542420 STK26Q9P289 416 aa12.84□□□□□ -0.35
SS18-205ENST00000542420 FER1L4A9Z1Z3 1794 aa12.84□□□□□ -0.35
SS18-205ENST00000542420 VIRMAQ69YN4 1812 aaKnown RBP12.83□□□□□ -0.35
SS18-205ENST00000542420 KDM2BQ8NHM5 1336 aa12.83□□□□□ -0.36
SS18-205ENST00000542420 NRKQ7Z2Y5 1582 aa12.83□□□□□ -0.36
SS18-205ENST00000542420 AATKQ6ZMQ8 1374 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms