RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 TECPR2O15040 1411 aa22.56■■□□□ 1.2
UBE3B-211ENST00000539843 PIK3C2GO75747 1445 aa22.56■■□□□ 1.2
UBE3B-211ENST00000539843 NPHP3Q7Z494 1330 aa22.56■■□□□ 1.2
UBE3B-211ENST00000539843 SOS2Q07890 1332 aaPredicted RBP22.55■■□□□ 1.2
UBE3B-211ENST00000539843 ABCC11Q96J66 1382 aa22.54■■□□□ 1.2
UBE3B-211ENST00000539843 RAB3GAP2Q9H2M9 1393 aa22.52■■□□□ 1.2
UBE3B-211ENST00000539843 IFT172Q9UG01 1749 aa22.52■■□□□ 1.2
UBE3B-211ENST00000539843 NGLY1Q96IV0 654 aa22.52■■□□□ 1.2
UBE3B-211ENST00000539843 LAMC1P11047 1609 aa22.52■■□□□ 1.2
UBE3B-211ENST00000539843 ADAMTS2O95450 1211 aa22.51■■□□□ 1.19
UBE3B-211ENST00000539843 TMEM132EQ6IEE7 984 aa22.51■■□□□ 1.19
UBE3B-211ENST00000539843 DHX57Q6P158 1386 aaKnown RBP22.5■■□□□ 1.19
UBE3B-211ENST00000539843 YTHDC2Q9H6S0 1430 aaKnown RBP22.5■■□□□ 1.19
UBE3B-211ENST00000539843 CDK12Q9NYV4 1490 aaPredicted RBP22.5■■□□□ 1.19
UBE3B-211ENST00000539843 WAPLQ7Z5K2 1190 aa22.5■■□□□ 1.19
UBE3B-211ENST00000539843 KNDC1Q76NI1 1749 aa22.48■■□□□ 1.19
UBE3B-211ENST00000539843 MYOM2P54296 1465 aa22.48■■□□□ 1.19
UBE3B-211ENST00000539843 RBM6P78332 1123 aaKnown RBP22.47■■□□□ 1.19
UBE3B-211ENST00000539843 SIRT1Q96EB6 747 aa22.47■■□□□ 1.19
UBE3B-211ENST00000539843 C14orf93Q9H972 538 aaKnown RBP22.47■■□□□ 1.19
UBE3B-211ENST00000539843 QTRT2Q9H974 415 aaKnown RBP22.47■■□□□ 1.19
UBE3B-211ENST00000539843 NUTM2FA1L443 756 aa22.46■■□□□ 1.19
UBE3B-211ENST00000539843 FOXO3O43524 673 aa22.45■■□□□ 1.18
UBE3B-211ENST00000539843 NRXN1Q9ULB1 1477 aa22.43■■□□□ 1.18
UBE3B-211ENST00000539843 PLEKHH1Q9ULM0 1364 aa22.43■■□□□ 1.18
UBE3B-211ENST00000539843 CFAP70Q5T0N1 1121 aa22.43■■□□□ 1.18
UBE3B-211ENST00000539843 USP21Q9UK80 565 aa22.43■■□□□ 1.18
UBE3B-211ENST00000539843 POGKQ9P215 609 aa22.42■■□□□ 1.18
UBE3B-211ENST00000539843 TRPC5Q9UL62 973 aaPredicted RBP22.41■■□□□ 1.18
UBE3B-211ENST00000539843 XPCQ01831 940 aaPredicted RBP22.4■■□□□ 1.18
UBE3B-211ENST00000539843 PXDNQ92626 1479 aa22.4■■□□□ 1.18
UBE3B-211ENST00000539843 KIF1AQ12756 1690 aa22.39■■□□□ 1.18
UBE3B-211ENST00000539843 COL22A1Q8NFW1 1626 aaPredicted RBP22.39■■□□□ 1.18
UBE3B-211ENST00000539843 HRCP23327 699 aa22.39■■□□□ 1.17
UBE3B-211ENST00000539843 UPF1Q92900 1129 aaKnown RBP eCLIP22.39■■□□□ 1.17
UBE3B-211ENST00000539843 STAC3Q96MF2 364 aa22.39■■□□□ 1.17
UBE3B-211ENST00000539843 PSME1Q06323 249 aa22.38■■□□□ 1.17
UBE3B-211ENST00000539843 FMN2Q9NZ56 1722 aa22.37■■□□□ 1.17
UBE3B-211ENST00000539843 PRAM1Q96QH2 718 aa22.37■■□□□ 1.17
UBE3B-211ENST00000539843 HAP1P54257 671 aaPredicted RBP22.36■■□□□ 1.17
UBE3B-211ENST00000539843 SAFB2Q14151 953 aaKnown RBP eCLIP22.36■■□□□ 1.17
UBE3B-211ENST00000539843 FNBP4Q8N3X1 1017 aaPredicted RBP22.36■■□□□ 1.17
UBE3B-211ENST00000539843 RGS12O14924 1447 aa22.35■■□□□ 1.17
UBE3B-211ENST00000539843 DCAF11Q8TEB1 546 aa22.35■■□□□ 1.17
UBE3B-211ENST00000539843 PHF8Q9UPP1 1060 aa22.35■■□□□ 1.17
UBE3B-211ENST00000539843 DLC1Q96QB1 1528 aa22.35■■□□□ 1.17
UBE3B-211ENST00000539843 EIF3AQ14152 1382 aaKnown RBP22.35■■□□□ 1.17
UBE3B-211ENST00000539843 KRT28Q7Z3Y7 464 aa22.34■■□□□ 1.17
UBE3B-211ENST00000539843 KDM2AQ9Y2K7 1162 aa22.34■■□□□ 1.17
UBE3B-211ENST00000539843 SPATA31A3Q5VYP0 1347 aa22.32■■□□□ 1.16
UBE3B-211ENST00000539843 ANKARQ7Z5J8 1434 aa22.31■■□□□ 1.16
UBE3B-211ENST00000539843 ATAD2Q6PL18 1390 aa22.3■■□□□ 1.16
UBE3B-211ENST00000539843 TRAK1Q9UPV9 953 aa22.3■■□□□ 1.16
UBE3B-211ENST00000539843 ATRNO75882 1429 aa22.29■■□□□ 1.16
UBE3B-211ENST00000539843 TNS3Q68CZ2 1445 aa22.29■■□□□ 1.16
UBE3B-211ENST00000539843 ARHGEF10O15013 1369 aa22.28■■□□□ 1.16
UBE3B-211ENST00000539843 LMOD2Q6P5Q4 547 aa22.28■■□□□ 1.16
UBE3B-211ENST00000539843 SBNO1A3KN83 1393 aa22.26■■□□□ 1.15
UBE3B-211ENST00000539843 ADGRB1O14514 1584 aa22.25■■□□□ 1.15
UBE3B-211ENST00000539843 ADGRB2O60241 1585 aa22.25■■□□□ 1.15
UBE3B-211ENST00000539843 GPRASP1Q5JY77 1395 aa22.25■■□□□ 1.15
UBE3B-211ENST00000539843 MINK1Q8N4C8 1332 aaPredicted RBP22.24■■□□□ 1.15
UBE3B-211ENST00000539843 MARF1Q9Y4F3 1742 aaKnown RBP22.23■■□□□ 1.15
UBE3B-211ENST00000539843 UNC5CLQ8IV45 518 aa22.23■■□□□ 1.15
UBE3B-211ENST00000539843 PMFBP1Q8TBY8 1022 aa22.23■■□□□ 1.15
UBE3B-211ENST00000539843 GJD4Q96KN9 370 aaPredicted RBP22.23■■□□□ 1.15
UBE3B-211ENST00000539843 HIRIP3Q9BW71 556 aaPredicted RBP22.23■■□□□ 1.15
UBE3B-211ENST00000539843 BCL9LQ86UU0 1499 aa22.22■■□□□ 1.15
UBE3B-211ENST00000539843 USP32Q8NFA0 1604 aa22.2■■□□□ 1.15
UBE3B-211ENST00000539843 WASLO00401 505 aaPredicted RBP22.2■■□□□ 1.14
UBE3B-211ENST00000539843 PLEKHG5O94827 1062 aa22.2■■□□□ 1.14
UBE3B-211ENST00000539843 TULP4Q9NRJ4 1543 aa22.19■■□□□ 1.14
UBE3B-211ENST00000539843 NGDNQ8NEJ9 315 aaKnown RBP22.18■■□□□ 1.14
UBE3B-211ENST00000539843 SLIT2O94813 1529 aa22.17■■□□□ 1.14
UBE3B-211ENST00000539843 RGPD8O14715 1765 aaPredicted RBP22.17■■□□□ 1.14
UBE3B-211ENST00000539843 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.17■■□□□ 1.14
UBE3B-211ENST00000539843 CABLES1Q8TDN4 633 aa22.16■■□□□ 1.14
UBE3B-211ENST00000539843 CCDC9Q9Y3X0 531 aaKnown RBP22.16■■□□□ 1.14
UBE3B-211ENST00000539843 CCDC125Q86Z20 511 aa22.15■■□□□ 1.14
UBE3B-211ENST00000539843 RALGAPBQ86X10 1494 aa22.13■■□□□ 1.13
UBE3B-211ENST00000539843 PAK3O75914 559 aaPredicted RBP22.12■■□□□ 1.13
UBE3B-211ENST00000539843 VPS72Q15906 364 aa22.12■■□□□ 1.13
UBE3B-211ENST00000539843 PRR36Q9H6K5 1346 aa22.1■■□□□ 1.13
UBE3B-211ENST00000539843 NUDT16Q96DE0 195 aaKnown RBP22.09■■□□□ 1.13
UBE3B-211ENST00000539843 ARHGEF28Q8N1W1 1705 aaKnown RBP22.09■■□□□ 1.13
UBE3B-211ENST00000539843 A0A0G2JS52 829 aa22.08■■□□□ 1.13
UBE3B-211ENST00000539843 MYT1Q01538 1121 aa22.08■■□□□ 1.13
UBE3B-211ENST00000539843 ITSN1Q15811 1721 aa22.08■■□□□ 1.12
UBE3B-211ENST00000539843 NWD2Q9ULI1 1742 aa22.08■■□□□ 1.12
UBE3B-211ENST00000539843 SF3B2Q13435 895 aaKnown RBP22.07■■□□□ 1.12
UBE3B-211ENST00000539843 KIAA1210Q9ULL0 1709 aa22.06■■□□□ 1.12
UBE3B-211ENST00000539843 SEPT12Q8IYM1 358 aa22.06■■□□□ 1.12
UBE3B-211ENST00000539843 CDK19Q9BWU1 502 aa22.06■■□□□ 1.12
UBE3B-211ENST00000539843 GLI3P10071 1580 aa22.06■■□□□ 1.12
UBE3B-211ENST00000539843 PLCH1Q4KWH8 1693 aa22.06■■□□□ 1.12
UBE3B-211ENST00000539843 ABCA3Q99758 1704 aa22.06■■□□□ 1.12
UBE3B-211ENST00000539843 ATP7BP35670 1465 aa22.05■■□□□ 1.12
UBE3B-211ENST00000539843 TRPM3Q9HCF6 1732 aaPredicted RBP22.05■■□□□ 1.12
UBE3B-211ENST00000539843 FAM83GA6ND36 823 aa22.04■■□□□ 1.12
UBE3B-211ENST00000539843 PRDM11Q9NQV5 511 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms