RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 NISCHQ9Y2I1 1504 aa37.87■■■■□ 3.65
UBE3B-211ENST00000539843 CCDC180Q9P1Z9 1646 aa33.97■■■■□ 3.03
UBE3B-211ENST00000539843 ABCC9O60706 1549 aa33.84■■■■□ 3.01
UBE3B-211ENST00000539843 RB1CC1Q8TDY2 1594 aa32.32■■■□□ 2.77
UBE3B-211ENST00000539843 NACADO15069 1562 aa32.12■■■□□ 2.73
UBE3B-211ENST00000539843 DCAF8L2P0C7V8 631 aa32.03■■■□□ 2.72
UBE3B-211ENST00000539843 MYO15BQ96JP2 1530 aa31.71■■■□□ 2.67
UBE3B-211ENST00000539843 PABPN1Q86U42 306 aaKnown RBP eCLIP31.51■■■□□ 2.63
UBE3B-211ENST00000539843 DNAJC5BQ9UF47 199 aa31.49■■■□□ 2.63
UBE3B-211ENST00000539843 ZCCHC6Q5VYS8 1495 aaKnown RBP31.42■■■□□ 2.62
UBE3B-211ENST00000539843 UNC13AQ9UPW8 1703 aa31.38■■■□□ 2.61
UBE3B-211ENST00000539843 DCAF1Q9Y4B6 1507 aa31.33■■■□□ 2.61
UBE3B-211ENST00000539843 BICRAQ9NZM4 1560 aa31.21■■■□□ 2.59
UBE3B-211ENST00000539843 SHROOM4Q9ULL8 1493 aa31.02■■■□□ 2.56
UBE3B-211ENST00000539843 SCRIBQ14160 1630 aa30.94■■■□□ 2.54
UBE3B-211ENST00000539843 CC2D2AQ9P2K1 1620 aa30.55■■■□□ 2.48
UBE3B-211ENST00000539843 EIF4G1Q04637 1599 aaKnown RBP30.54■■■□□ 2.48
UBE3B-211ENST00000539843 CECR2Q9BXF3 1484 aa30.51■■■□□ 2.48
UBE3B-211ENST00000539843 NCAPD3P42695 1498 aa29.61■■■□□ 2.33
UBE3B-211ENST00000539843 SMARCA2P51531 1590 aa29.53■■■□□ 2.32
UBE3B-211ENST00000539843 ATAD2BQ9ULI0 1458 aa29.53■■■□□ 2.32
UBE3B-211ENST00000539843 SMARCA4P51532 1647 aa29.52■■■□□ 2.32
UBE3B-211ENST00000539843 BAZ1AQ9NRL2 1556 aaPredicted RBP29.46■■■□□ 2.31
UBE3B-211ENST00000539843 HMGXB3Q12766 1538 aa29.43■■■□□ 2.3
UBE3B-211ENST00000539843 ERCC6Q03468 1493 aa29.33■■■□□ 2.29
UBE3B-211ENST00000539843 BAZ1BQ9UIG0 1483 aaKnown RBP29.32■■■□□ 2.28
UBE3B-211ENST00000539843 PEG3Q9GZU2 1588 aa29.23■■■□□ 2.27
UBE3B-211ENST00000539843 CUX2O14529 1486 aa29.2■■■□□ 2.26
UBE3B-211ENST00000539843 MROH2BQ7Z745 1585 aa29.13■■■□□ 2.25
UBE3B-211ENST00000539843 NESP48681 1621 aa29.04■■■□□ 2.24
UBE3B-211ENST00000539843 DNAJC5Q9H3Z4 198 aa28.98■■■□□ 2.23
UBE3B-211ENST00000539843 LAMC3Q9Y6N6 1575 aa28.96■■■□□ 2.23
UBE3B-211ENST00000539843 PDS5BQ9NTI5 1447 aa28.86■■■□□ 2.21
UBE3B-211ENST00000539843 WIZO95785 1651 aa28.78■■■□□ 2.2
UBE3B-211ENST00000539843 CADPSQ9ULU8 1353 aa28.75■■■□□ 2.19
UBE3B-211ENST00000539843 THOC2Q8NI27 1593 aaKnown RBP28.75■■■□□ 2.19
UBE3B-211ENST00000539843 KIF21AQ7Z4S6 1674 aa28.67■■■□□ 2.18
UBE3B-211ENST00000539843 RSF1Q96T23 1441 aaPredicted RBP28.6■■■□□ 2.17
UBE3B-211ENST00000539843 MRC2Q9UBG0 1479 aa28.55■■■□□ 2.16
UBE3B-211ENST00000539843 TOP2AP11388 1531 aaKnown RBP28.52■■■□□ 2.16
UBE3B-211ENST00000539843 CEP164Q9UPV0 1460 aa28.48■■■□□ 2.15
UBE3B-211ENST00000539843 WDR62O43379 1518 aa28.43■■■□□ 2.14
UBE3B-211ENST00000539843 CFTRP13569 1480 aa28.42■■■□□ 2.14
UBE3B-211ENST00000539843 FANCD2Q9BXW9 1451 aa28.42■■■□□ 2.14
UBE3B-211ENST00000539843 CCDC88BA6NC98 1476 aa28.15■■■□□ 2.1
UBE3B-211ENST00000539843 PRDM2Q13029 1718 aa28.11■■■□□ 2.09
UBE3B-211ENST00000539843 URB2Q14146 1524 aaKnown RBP28.11■■■□□ 2.09
UBE3B-211ENST00000539843 ABCC8Q09428 1581 aa27.93■■■□□ 2.06
UBE3B-211ENST00000539843 IFT140Q96RY7 1462 aa27.9■■■□□ 2.06
UBE3B-211ENST00000539843 OSCARQ8IYS5 282 aa27.9■■■□□ 2.06
UBE3B-211ENST00000539843 TOPBP1Q92547 1522 aa27.87■■■□□ 2.05
UBE3B-211ENST00000539843 TRIM41Q8WV44 630 aa27.82■■■□□ 2.04
UBE3B-211ENST00000539843 DNMBPQ6XZF7 1577 aa27.8■■■□□ 2.04
UBE3B-211ENST00000539843 ZNF608Q9ULD9 1512 aaPredicted RBP27.73■■■□□ 2.03
UBE3B-211ENST00000539843 EIF4G3O43432 1585 aaKnown RBP27.64■■■□□ 2.01
UBE3B-211ENST00000539843 POLA1P09884 1462 aaPredicted RBP27.59■■■□□ 2.01
UBE3B-211ENST00000539843 TARBP1Q13395 1621 aaKnown RBP27.55■■■□□ 2
UBE3B-211ENST00000539843 AQRO60306 1485 aaKnown RBP eCLIP27.53■■■□□ 22e-6■■■■□ 25.4
UBE3B-211ENST00000539843 SOGA1O94964 1423 aa27.51■■□□□ 1.99
UBE3B-211ENST00000539843 SUPT5HO00267 1087 aaKnown RBP27.51■■□□□ 1.99
UBE3B-211ENST00000539843 RAD54L2Q9Y4B4 1467 aa27.45■■□□□ 1.99
UBE3B-211ENST00000539843 FBLN2P98095 1184 aa27.45■■□□□ 1.98
UBE3B-211ENST00000539843 FGD5Q6ZNL6 1462 aa27.44■■□□□ 1.98
UBE3B-211ENST00000539843 WDR97A6NE52 1622 aa27.42■■□□□ 1.98
UBE3B-211ENST00000539843 RIMBP3CA6NJZ7 1639 aa27.41■■□□□ 1.98
UBE3B-211ENST00000539843 RIMBP3BA6NNM3 1639 aa27.41■■□□□ 1.98
UBE3B-211ENST00000539843 RIMBP3Q9UFD9 1639 aa27.41■■□□□ 1.98
UBE3B-211ENST00000539843 TDRD9Q8NDG6 1382 aaKnown RBP27.4■■□□□ 1.98
UBE3B-211ENST00000539843 CUX1P39880 1505 aa27.38■■□□□ 1.97
UBE3B-211ENST00000539843 ARHGEF11O15085 1522 aa27.37■■□□□ 1.97
UBE3B-211ENST00000539843 CHD1O14646 1710 aa27.36■■□□□ 1.97
UBE3B-211ENST00000539843 SNAPC4Q5SXM2 1469 aa27.3■■□□□ 1.96
UBE3B-211ENST00000539843 GRIN2BQ13224 1484 aa27.28■■□□□ 1.96
UBE3B-211ENST00000539843 CHMP7Q8WUX9 453 aaPredicted RBP27.28■■□□□ 1.96
UBE3B-211ENST00000539843 MAGI1Q96QZ7 1491 aaPredicted RBP27.27■■□□□ 1.96
UBE3B-211ENST00000539843 CYB5RLQ6IPT4 315 aa27.2■■□□□ 1.94
UBE3B-211ENST00000539843 SYNJ1O43426 1573 aa27.18■■□□□ 1.94
UBE3B-211ENST00000539843 GAPVD1Q14C86 1478 aa27.18■■□□□ 1.94
UBE3B-211ENST00000539843 SYNJ2O15056 1496 aa27.17■■□□□ 1.94
UBE3B-211ENST00000539843 ABCA10Q8WWZ4 1543 aa27.15■■□□□ 1.94
UBE3B-211ENST00000539843 WRNQ14191 1432 aaPredicted RBP eCLIP27.13■■□□□ 1.93
UBE3B-211ENST00000539843 PBRM1Q86U86 1689 aa27.09■■□□□ 1.93
UBE3B-211ENST00000539843 ARAP1Q96P48 1450 aa27.08■■□□□ 1.93
UBE3B-211ENST00000539843 CLASP1Q7Z460 1538 aa27.07■■□□□ 1.92
UBE3B-211ENST00000539843 ABCA5Q8WWZ7 1642 aa27.05■■□□□ 1.92
UBE3B-211ENST00000539843 TOP2BQ02880 1626 aa27.01■■□□□ 1.92
UBE3B-211ENST00000539843 BIVM-ERCC5R4GMW8 1640 aa27■■□□□ 1.91
UBE3B-211ENST00000539843 TRHP20396 242 aaPredicted RBP26.95■■□□□ 1.9
UBE3B-211ENST00000539843 GRIN2AQ12879 1464 aa26.9■■□□□ 1.9
UBE3B-211ENST00000539843 ADAMTS12P58397 1594 aa26.87■■□□□ 1.89
UBE3B-211ENST00000539843 FHAD1B1AJZ9 1412 aa26.86■■□□□ 1.89
UBE3B-211ENST00000539843 ERICH3Q5RHP9 1530 aa26.84■■□□□ 1.89
UBE3B-211ENST00000539843 NUP160Q12769 1436 aa26.78■■□□□ 1.88
UBE3B-211ENST00000539843 CEP170Q5SW79 1584 aa26.73■■□□□ 1.87
UBE3B-211ENST00000539843 SHROOM2Q13796 1616 aa26.61■■□□□ 1.85
UBE3B-211ENST00000539843 KIF27Q86VH2 1401 aa26.59■■□□□ 1.85
UBE3B-211ENST00000539843 ERCC6L2Q5T890 1561 aa26.58■■□□□ 1.85
UBE3B-211ENST00000539843 PRG4Q92954 1404 aaPredicted RBP26.55■■□□□ 1.84
UBE3B-211ENST00000539843 JPH4Q96JJ6 628 aa26.54■■□□□ 1.84
UBE3B-211ENST00000539843 CUL7Q14999 1698 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms