RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 NEXMIFQ5QGS0 1516 aa19.05■□□□□ 0.64
CLSTN3-208ENST00000538933 DEFB132Q7Z7B7 95 aa19.05■□□□□ 0.64
CLSTN3-208ENST00000538933 NUP155O75694 1391 aa19.05■□□□□ 0.64
CLSTN3-208ENST00000538933 ROBO2Q9HCK4 1378 aa19.05■□□□□ 0.64
CLSTN3-208ENST00000538933 ZNF326Q5BKZ1 582 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-208ENST00000538933 PXDNQ92626 1479 aa19.03■□□□□ 0.64
CLSTN3-208ENST00000538933 ROCK1Q13464 1354 aa19.02■□□□□ 0.64
CLSTN3-208ENST00000538933 PRAG1Q86YV5 1406 aa19.01■□□□□ 0.63
CLSTN3-208ENST00000538933 RALGAPBQ86X10 1494 aa19.01■□□□□ 0.63
CLSTN3-208ENST00000538933 SLIT2O94813 1529 aa19■□□□□ 0.63
CLSTN3-208ENST00000538933 CLTCL1P53675 1640 aa18.99■□□□□ 0.63
CLSTN3-208ENST00000538933 UNC5CLQ8IV45 518 aa18.98■□□□□ 0.63
CLSTN3-208ENST00000538933 NPHP3Q7Z494 1330 aa18.98■□□□□ 0.63
CLSTN3-208ENST00000538933 FOXO3O43524 673 aa18.95■□□□□ 0.62
CLSTN3-208ENST00000538933 PPARGC1BQ86YN6 1023 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-208ENST00000538933 KIF1BO60333 1816 aa18.95■□□□□ 0.62
CLSTN3-208ENST00000538933 HFM1A2PYH4 1435 aa18.94■□□□□ 0.62
CLSTN3-208ENST00000538933 ONECUT3O60422 494 aaPredicted RBP18.94■□□□□ 0.62
CLSTN3-208ENST00000538933 XPCQ01831 940 aaPredicted RBP18.94■□□□□ 0.62
CLSTN3-208ENST00000538933 ESCO1Q5FWF5 840 aa18.94■□□□□ 0.62
CLSTN3-208ENST00000538933 HRCP23327 699 aa18.93■□□□□ 0.62
CLSTN3-208ENST00000538933 SEPT12Q8IYM1 358 aa18.93■□□□□ 0.62
CLSTN3-208ENST00000538933 CDC42BPGQ6DT37 1551 aa18.93■□□□□ 0.62
CLSTN3-208ENST00000538933 PSDA5PKW4 1024 aaPredicted RBP18.91■□□□□ 0.62
CLSTN3-208ENST00000538933 SF3B2Q13435 895 aaKnown RBP18.9■□□□□ 0.62
CLSTN3-208ENST00000538933 USP32Q8NFA0 1604 aa18.89■□□□□ 0.62
CLSTN3-208ENST00000538933 VGFO15240 615 aaPredicted RBP18.89■□□□□ 0.61
CLSTN3-208ENST00000538933 VPS72Q15906 364 aa18.88■□□□□ 0.61
CLSTN3-208ENST00000538933 SPATA31A3Q5VYP0 1347 aa18.88■□□□□ 0.61
CLSTN3-208ENST00000538933 NWD2Q9ULI1 1742 aa18.86■□□□□ 0.61
CLSTN3-208ENST00000538933 LRPPRCP42704 1394 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-208ENST00000538933 KRT27Q7Z3Y8 459 aa18.86■□□□□ 0.61
CLSTN3-208ENST00000538933 PPLO60437 1756 aa18.85■□□□□ 0.61
CLSTN3-208ENST00000538933 PLCH1Q4KWH8 1693 aa18.85■□□□□ 0.61
CLSTN3-208ENST00000538933 NAIPQ13075 1403 aa18.84■□□□□ 0.61
CLSTN3-208ENST00000538933 NUTM2FA1L443 756 aa18.82■□□□□ 0.6
CLSTN3-208ENST00000538933 RPGRIP1LQ68CZ1 1315 aa18.81■□□□□ 0.6
CLSTN3-208ENST00000538933 FMN2Q9NZ56 1722 aa18.81■□□□□ 0.6
CLSTN3-208ENST00000538933 BAG6P46379 1132 aa18.81■□□□□ 0.6
CLSTN3-208ENST00000538933 WAPLQ7Z5K2 1190 aa18.8■□□□□ 0.6
CLSTN3-208ENST00000538933 RGPD8O14715 1765 aaPredicted RBP18.8■□□□□ 0.6
CLSTN3-208ENST00000538933 ABCA3Q99758 1704 aa18.8■□□□□ 0.6
CLSTN3-208ENST00000538933 KIF1AQ12756 1690 aa18.79■□□□□ 0.6
CLSTN3-208ENST00000538933 KRT28Q7Z3Y7 464 aa18.79■□□□□ 0.6
CLSTN3-208ENST00000538933 CABLES1Q8TDN4 633 aa18.79■□□□□ 0.6
CLSTN3-208ENST00000538933 TECPR2O15040 1411 aa18.79■□□□□ 0.6
CLSTN3-208ENST00000538933 RGPD1P0DJD0 1748 aa18.78■□□□□ 0.6
CLSTN3-208ENST00000538933 CCDC144AA2RUR9 1427 aa18.78■□□□□ 0.6
CLSTN3-208ENST00000538933 ITGAEP38570 1179 aa18.78■□□□□ 0.6
CLSTN3-208ENST00000538933 EN1Q05925 392 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-208ENST00000538933 R3HDM1Q15032 1099 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-208ENST00000538933 NRAPQ86VF7 1730 aa18.77■□□□□ 0.59
CLSTN3-208ENST00000538933 FAM83GA6ND36 823 aa18.76■□□□□ 0.59
CLSTN3-208ENST00000538933 PLEKHH1Q9ULM0 1364 aa18.76■□□□□ 0.59
CLSTN3-208ENST00000538933 TNS1Q9HBL0 1735 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-208ENST00000538933 CCDC9Q9Y3X0 531 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-208ENST00000538933 DISP2A7MBM2 1401 aa18.74■□□□□ 0.59
CLSTN3-208ENST00000538933 TNS3Q68CZ2 1445 aa18.74■□□□□ 0.59
CLSTN3-208ENST00000538933 ABCC11Q96J66 1382 aa18.73■□□□□ 0.59
CLSTN3-208ENST00000538933 STK26Q9P289 416 aa18.73■□□□□ 0.59
CLSTN3-208ENST00000538933 KNDC1Q76NI1 1749 aa18.73■□□□□ 0.59
CLSTN3-208ENST00000538933 FAM98CQ17RN3 349 aaKnown RBP18.72■□□□□ 0.59
CLSTN3-208ENST00000538933 ADGRF5Q8IZF2 1346 aa18.72■□□□□ 0.59
CLSTN3-208ENST00000538933 FAM182BQ5T319 152 aa18.71■□□□□ 0.59
CLSTN3-208ENST00000538933 SBNO1A3KN83 1393 aa18.7■□□□□ 0.58
CLSTN3-208ENST00000538933 YY1P25490 414 aa18.7■□□□□ 0.58
CLSTN3-208ENST00000538933 HAP1P54257 671 aaPredicted RBP18.7■□□□□ 0.58
CLSTN3-208ENST00000538933 IFT172Q9UG01 1749 aa18.7■□□□□ 0.58
CLSTN3-208ENST00000538933 PSME1Q06323 249 aa18.69■□□□□ 0.58
CLSTN3-208ENST00000538933 EZH2Q15910 746 aaKnown RBP18.69■□□□□ 0.58
CLSTN3-208ENST00000538933 PHF8Q9UPP1 1060 aa18.69■□□□□ 0.58
CLSTN3-208ENST00000538933 PLEKHG5O94827 1062 aa18.68■□□□□ 0.58
CLSTN3-208ENST00000538933 TMEM132EQ6IEE7 984 aa18.68■□□□□ 0.58
CLSTN3-208ENST00000538933 CAMKK2Q96RR4 588 aa18.68■□□□□ 0.58
CLSTN3-208ENST00000538933 THSD7AQ9UPZ6 1657 aa18.68■□□□□ 0.58
CLSTN3-208ENST00000538933 NRXN1Q9ULB1 1477 aa18.67■□□□□ 0.58
CLSTN3-208ENST00000538933 A0A0G2JS52 829 aa18.66■□□□□ 0.58
CLSTN3-208ENST00000538933 MYT1Q01538 1121 aa18.66■□□□□ 0.58
CLSTN3-208ENST00000538933 BTG4Q9NY30 223 aa18.66■□□□□ 0.58
CLSTN3-208ENST00000538933 ARHGEF10O15013 1369 aa18.66■□□□□ 0.58
CLSTN3-208ENST00000538933 RRBP1Q9P2E9 1410 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-208ENST00000538933 SIRT1Q96EB6 747 aa18.65■□□□□ 0.58
CLSTN3-208ENST00000538933 SPATA31A5Q5VU36 1347 aa18.65■□□□□ 0.58
CLSTN3-208ENST00000538933 SPATA31A7Q8IWB4 1347 aa18.65■□□□□ 0.58
CLSTN3-208ENST00000538933 COL14A1Q05707 1796 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-208ENST00000538933 TRPM3Q9HCF6 1732 aaPredicted RBP18.63■□□□□ 0.57
CLSTN3-208ENST00000538933 LMOD2Q6P5Q4 547 aa18.63■□□□□ 0.57
CLSTN3-208ENST00000538933 YTHDC2Q9H6S0 1430 aaKnown RBP18.63■□□□□ 0.57
CLSTN3-208ENST00000538933 RREB1Q92766 1687 aa18.62■□□□□ 0.57
CLSTN3-208ENST00000538933 ALS2Q96Q42 1657 aa18.61■□□□□ 0.57
CLSTN3-208ENST00000538933 SPATA31E1Q6ZUB1 1445 aa18.61■□□□□ 0.57
CLSTN3-208ENST00000538933 CRYBG1Q9Y4K1 1723 aa18.6■□□□□ 0.57
CLSTN3-208ENST00000538933 PIK3C2GO75747 1445 aa18.59■□□□□ 0.57
CLSTN3-208ENST00000538933 TRIM37O94972 964 aa18.59■□□□□ 0.57
CLSTN3-208ENST00000538933 TRIM26Q12899 539 aaPredicted RBP18.59■□□□□ 0.57
CLSTN3-208ENST00000538933 NUP188Q5SRE5 1749 aa18.59■□□□□ 0.57
CLSTN3-208ENST00000538933 UTRNP46939 3433 aa18.58■□□□□ 0.57
CLSTN3-208ENST00000538933 PARD3Q8TEW0 1356 aa18.58■□□□□ 0.57
CLSTN3-208ENST00000538933 ANKRD30BQ9BXX2 1392 aa18.58■□□□□ 0.57
CLSTN3-208ENST00000538933 ADGRB2O60241 1585 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms