RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 GZF1Q9H116 711 aaPredicted RBP10.7□□□□□ -0.7
CSMD1-213ENST00000523488 RRP7BPQ9NSQ0 103 aa10.7□□□□□ -0.7
CSMD1-213ENST00000523488 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.7□□□□□ -0.7
CSMD1-213ENST00000523488 RBM25P49756 843 aaKnown RBP10.69□□□□□ -0.7
CSMD1-213ENST00000523488 POLR3AO14802 1390 aaPredicted RBP10.69□□□□□ -0.7
CSMD1-213ENST00000523488 PLIN1O60240 522 aa10.69□□□□□ -0.7
CSMD1-213ENST00000523488 GRPEL1Q9HAV7 217 aa10.69□□□□□ -0.7
CSMD1-213ENST00000523488 SEC24BO95487 1268 aa10.69□□□□□ -0.7
CSMD1-213ENST00000523488 ZCCHC11Q5TAX3 1644 aaKnown RBP10.68□□□□□ -0.7
CSMD1-213ENST00000523488 ARAP3Q8WWN8 1544 aa10.68□□□□□ -0.7
CSMD1-213ENST00000523488 AMER1Q5JTC6 1135 aaPredicted RBP10.68□□□□□ -0.7
CSMD1-213ENST00000523488 FGD1P98174 961 aa10.67□□□□□ -0.7
CSMD1-213ENST00000523488 MCM5P33992 734 aa10.67□□□□□ -0.7
CSMD1-213ENST00000523488 PANK2Q9BZ23 570 aa10.67□□□□□ -0.7
CSMD1-213ENST00000523488 IGHDP01880 384 aa10.67□□□□□ -0.7
CSMD1-213ENST00000523488 MYH16Q9H6N6 1097 aa10.67□□□□□ -0.7
CSMD1-213ENST00000523488 PPLO60437 1756 aa10.66□□□□□ -0.7
CSMD1-213ENST00000523488 DDX11L8A8MPP1 907 aa10.66□□□□□ -0.7
CSMD1-213ENST00000523488 DMTNQ08495 405 aa10.66□□□□□ -0.7
CSMD1-213ENST00000523488 ZNF326Q5BKZ1 582 aaKnown RBP10.66□□□□□ -0.7
CSMD1-213ENST00000523488 MROH1Q8NDA8 1641 aa10.66□□□□□ -0.7
CSMD1-213ENST00000523488 ZNF445P59923 1031 aa10.66□□□□□ -0.7
CSMD1-213ENST00000523488 ERCC6Q03468 1493 aa10.66□□□□□ -0.7
CSMD1-213ENST00000523488 VGFO15240 615 aaPredicted RBP10.66□□□□□ -0.7
CSMD1-213ENST00000523488 CCDC173Q0VFZ6 552 aa10.66□□□□□ -0.7
CSMD1-213ENST00000523488 CHMP5Q9NZZ3 219 aa10.66□□□□□ -0.7
CSMD1-213ENST00000523488 RAB3GAP1Q15042 981 aa10.65□□□□□ -0.7
CSMD1-213ENST00000523488 COL3A1P02461 1466 aaPredicted RBP10.65□□□□□ -0.7
CSMD1-213ENST00000523488 SYCP2Q9BX26 1530 aa10.65□□□□□ -0.7
CSMD1-213ENST00000523488 KNDC1Q76NI1 1749 aa10.65□□□□□ -0.71
CSMD1-213ENST00000523488 CRYBG1Q9Y4K1 1723 aa10.65□□□□□ -0.71
CSMD1-213ENST00000523488 FRMPD1Q5SYB0 1578 aa10.64□□□□□ -0.71
CSMD1-213ENST00000523488 ERVK-7P63135 1459 aa10.64□□□□□ -0.71
CSMD1-213ENST00000523488 TDRD9Q8NDG6 1382 aaKnown RBP10.64□□□□□ -0.71
CSMD1-213ENST00000523488 MROH2AA6NES4 1674 aa10.64□□□□□ -0.71
CSMD1-213ENST00000523488 ST20-MTHFSA0A0A6YYL1 179 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 CYP2E1P05181 493 aaPredicted RBP10.63□□□□□ -0.71
CSMD1-213ENST00000523488 CCDC27Q2M243 656 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 NOL7Q9UMY1 257 aaKnown RBP10.63□□□□□ -0.71
CSMD1-213ENST00000523488 QRICH2Q9H0J4 1663 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.63□□□□□ -0.71
CSMD1-213ENST00000523488 CHIC2Q9UKJ5 165 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 PPIP5K1Q6PFW1 1433 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 PIK3C2BO00750 1634 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 DYNC1I1O14576 645 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 FOXD1Q16676 465 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 SKOR2Q2VWA4 1001 aaPredicted RBP10.63□□□□□ -0.71
CSMD1-213ENST00000523488 MAGI1Q96QZ7 1491 aaPredicted RBP10.63□□□□□ -0.71
CSMD1-213ENST00000523488 NOS1P29475 1434 aa10.63□□□□□ -0.71
CSMD1-213ENST00000523488 TRAK2O60296 914 aa10.62□□□□□ -0.71
CSMD1-213ENST00000523488 ZSCAN30Q86W11 494 aa10.62□□□□□ -0.71
CSMD1-213ENST00000523488 SLC4A1APQ9BWU0 796 aaKnown RBP10.62□□□□□ -0.71
CSMD1-213ENST00000523488 PIK3R4Q99570 1358 aa10.62□□□□□ -0.71
CSMD1-213ENST00000523488 ZNF518AQ6AHZ1 1483 aa10.62□□□□□ -0.71
CSMD1-213ENST00000523488 UPF2Q9HAU5 1272 aaKnown RBP10.62□□□□□ -0.71
CSMD1-213ENST00000523488 GAS2L3Q86XJ1 694 aa10.62□□□□□ -0.71
CSMD1-213ENST00000523488 STAC3Q96MF2 364 aa10.61□□□□□ -0.71
CSMD1-213ENST00000523488 FANCAO15360 1455 aa10.61□□□□□ -0.71
CSMD1-213ENST00000523488 ZSCAN20P17040 1043 aaPredicted RBP10.61□□□□□ -0.71
CSMD1-213ENST00000523488 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.61□□□□□ -0.71
CSMD1-213ENST00000523488 SETD1AO15047 1707 aaKnown RBP10.61□□□□□ -0.71
CSMD1-213ENST00000523488 PRG4Q92954 1404 aaPredicted RBP10.61□□□□□ -0.71
CSMD1-213ENST00000523488 IL17RAQ96F46 866 aa10.61□□□□□ -0.71
CSMD1-213ENST00000523488 GLI2P10070 1586 aa10.61□□□□□ -0.71
CSMD1-213ENST00000523488 LMTK2Q8IWU2 1503 aa10.61□□□□□ -0.71
CSMD1-213ENST00000523488 GOLGA2Q08379 1002 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 ITSN1Q15811 1721 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 KIF1BO60333 1816 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 CLUAP1Q96AJ1 413 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 KIF2CQ99661 725 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 ARHGEF28Q8N1W1 1705 aaKnown RBP10.6□□□□□ -0.71
CSMD1-213ENST00000523488 E9PSI1 815 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 PPP2R1AP30153 589 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 SLC20A2Q08357 652 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 PDE4CQ08493 712 aa10.6□□□□□ -0.71
CSMD1-213ENST00000523488 HDAC1Q13547 482 aaPredicted RBP10.6□□□□□ -0.71
CSMD1-213ENST00000523488 PREX1Q8TCU6 1659 aa10.59□□□□□ -0.71
CSMD1-213ENST00000523488 ANP32BQ92688 251 aaKnown RBP10.59□□□□□ -0.71
CSMD1-213ENST00000523488 ZNF777Q9ULD5 760 aaPredicted RBP10.59□□□□□ -0.71
CSMD1-213ENST00000523488 PDS5BQ9NTI5 1447 aa10.59□□□□□ -0.71
CSMD1-213ENST00000523488 SPRYD3Q8NCJ5 442 aa10.59□□□□□ -0.71
CSMD1-213ENST00000523488 ASXL2Q76L83 1435 aa10.58□□□□□ -0.72
CSMD1-213ENST00000523488 KIF16BQ96L93 1317 aa10.58□□□□□ -0.72
CSMD1-213ENST00000523488 ADAMTS8Q9UP79 889 aa10.58□□□□□ -0.72
CSMD1-213ENST00000523488 EFCAB6Q5THR3 1501 aa10.58□□□□□ -0.72
CSMD1-213ENST00000523488 CHD2O14647 1828 aaKnown RBP10.58□□□□□ -0.72
CSMD1-213ENST00000523488 ARID3AQ99856 593 aa10.58□□□□□ -0.72
CSMD1-213ENST00000523488 CARD11Q9BXL7 1154 aa10.58□□□□□ -0.72
CSMD1-213ENST00000523488 KIF20AO95235 890 aa10.57□□□□□ -0.72
CSMD1-213ENST00000523488 KIAA1211Q6ZU35 1233 aa10.57□□□□□ -0.72
CSMD1-213ENST00000523488 PMFBP1Q8TBY8 1022 aa10.57□□□□□ -0.72
CSMD1-213ENST00000523488 FAM13BQ9NYF5 915 aa10.57□□□□□ -0.72
CSMD1-213ENST00000523488 ABCC1P33527 1531 aa10.57□□□□□ -0.72
CSMD1-213ENST00000523488 GTPBP4Q9BZE4 634 aaKnown RBP10.57□□□□□ -0.72
CSMD1-213ENST00000523488 CT47B1P0C2W7 299 aaPredicted RBP10.57□□□□□ -0.72
CSMD1-213ENST00000523488 PKD2Q13563 968 aa10.57□□□□□ -0.72
CSMD1-213ENST00000523488 ADGRB3O60242 1522 aa10.57□□□□□ -0.72
CSMD1-213ENST00000523488 BRPF1P55201 1214 aaPredicted RBP10.56□□□□□ -0.72
CSMD1-213ENST00000523488 SPINK5Q9NQ38 1064 aaPredicted RBP10.56□□□□□ -0.72
CSMD1-213ENST00000523488 KIF20BQ96Q89 1820 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms