RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 ELL2O00472 640 aaPredicted RBP9.56□□□□□ -0.88
NEDD9-208ENST00000504387 PLPPR3Q6T4P5 718 aa9.56□□□□□ -0.88
NEDD9-208ENST00000504387 RNF214Q8ND24 703 aa9.56□□□□□ -0.88
NEDD9-208ENST00000504387 ATP10BO94823 1461 aa9.56□□□□□ -0.88
NEDD9-208ENST00000504387 PRAG1Q86YV5 1406 aa9.56□□□□□ -0.88
NEDD9-208ENST00000504387 SPAG9O60271 1321 aaKnown RBP9.56□□□□□ -0.88
NEDD9-208ENST00000504387 DDX11L8A8MPP1 907 aa9.56□□□□□ -0.88
NEDD9-208ENST00000504387 EFCAB2Q5VUJ9 269 aa9.56□□□□□ -0.88
NEDD9-208ENST00000504387 CAVIN1Q6NZI2 390 aaKnown RBP9.56□□□□□ -0.88
NEDD9-208ENST00000504387 CHD1O14646 1710 aa9.56□□□□□ -0.88
NEDD9-208ENST00000504387 PLEKHH2Q8IVE3 1493 aa9.55□□□□□ -0.88
NEDD9-208ENST00000504387 FAM177BA6PVY3 158 aa9.55□□□□□ -0.88
NEDD9-208ENST00000504387 MCTP1Q6DN14 999 aa9.55□□□□□ -0.88
NEDD9-208ENST00000504387 TSC1Q92574 1164 aa9.55□□□□□ -0.88
NEDD9-208ENST00000504387 CARD14Q9BXL6 1004 aa9.55□□□□□ -0.88
NEDD9-208ENST00000504387 CDCA8Q53HL2 280 aa9.55□□□□□ -0.88
NEDD9-208ENST00000504387 TRMT2AQ8IZ69 625 aaKnown RBP9.55□□□□□ -0.88
NEDD9-208ENST00000504387 BCL11BQ9C0K0 894 aaPredicted RBP9.55□□□□□ -0.88
NEDD9-208ENST00000504387 ARHGAP5Q13017 1502 aa9.54□□□□□ -0.88
NEDD9-208ENST00000504387 RBM27Q9P2N5 1060 aaKnown RBP9.54□□□□□ -0.88
NEDD9-208ENST00000504387 ANKRD45Q5TZF3 282 aa9.54□□□□□ -0.88
NEDD9-208ENST00000504387 DZIP1LQ8IYY4 767 aaKnown RBP9.54□□□□□ -0.88
NEDD9-208ENST00000504387 GBP4Q96PP9 640 aa9.54□□□□□ -0.88
NEDD9-208ENST00000504387 SLC12A5Q9H2X9 1139 aa9.54□□□□□ -0.88
NEDD9-208ENST00000504387 EXOSC9Q06265 439 aaKnown RBP9.53□□□□□ -0.88
NEDD9-208ENST00000504387 NOL8Q76FK4 1167 aaKnown RBP9.53□□□□□ -0.88
NEDD9-208ENST00000504387 MTHFSP49914 203 aa9.53□□□□□ -0.88
NEDD9-208ENST00000504387 NLRP1Q9C000 1473 aa9.52□□□□□ -0.89
NEDD9-208ENST00000504387 PKP1Q13835 747 aa9.52□□□□□ -0.89
NEDD9-208ENST00000504387 MVPQ14764 893 aaKnown RBP9.52□□□□□ -0.89
NEDD9-208ENST00000504387 DNTTIP2Q5QJE6 756 aaKnown RBP9.52□□□□□ -0.89
NEDD9-208ENST00000504387 GAS2L2Q8NHY3 880 aa9.52□□□□□ -0.89
NEDD9-208ENST00000504387 COL17A1Q9UMD9 1497 aaPredicted RBP9.52□□□□□ -0.89
NEDD9-208ENST00000504387 ZKSCAN2Q63HK3 967 aa9.52□□□□□ -0.89
NEDD9-208ENST00000504387 PDCL3Q9H2J4 239 aa9.52□□□□□ -0.89
NEDD9-208ENST00000504387 NOB1Q9ULX3 412 aaKnown RBP9.52□□□□□ -0.89
NEDD9-208ENST00000504387 RIPK4P57078 832 aa9.51□□□□□ -0.89
NEDD9-208ENST00000504387 RSPH4AQ5TD94 716 aa9.51□□□□□ -0.89
NEDD9-208ENST00000504387 UQCRHLA0A096LP55 91 aa9.51□□□□□ -0.89
NEDD9-208ENST00000504387 UQCRHP07919 91 aa9.51□□□□□ -0.89
NEDD9-208ENST00000504387 TRIM27P14373 513 aa9.51□□□□□ -0.89
NEDD9-208ENST00000504387 TMEM57Q8N5G2 664 aa9.51□□□□□ -0.89
NEDD9-208ENST00000504387 ZNF692Q9BU19 519 aaPredicted RBP9.5□□□□□ -0.89
NEDD9-208ENST00000504387 A2MP01023 1474 aa9.5□□□□□ -0.89
NEDD9-208ENST00000504387 IGSF3O75054 1194 aa9.5□□□□□ -0.89
NEDD9-208ENST00000504387 PLCB2Q00722 1185 aa9.5□□□□□ -0.89
NEDD9-208ENST00000504387 PRPF40AO75400 957 aaKnown RBP9.5□□□□□ -0.89
NEDD9-208ENST00000504387 ZSCAN30Q86W11 494 aa9.5□□□□□ -0.89
NEDD9-208ENST00000504387 SSH1Q8WYL5 1049 aa9.5□□□□□ -0.89
NEDD9-208ENST00000504387 GOLGA6L22H0YM25 854 aa9.49□□□□□ -0.89
NEDD9-208ENST00000504387 DTNBO60941 627 aa9.49□□□□□ -0.89
NEDD9-208ENST00000504387 PTMAP06454 111 aaKnown RBP9.49□□□□□ -0.89
NEDD9-208ENST00000504387 TPM2P07951 284 aa9.49□□□□□ -0.89
NEDD9-208ENST00000504387 CALD1Q05682 793 aaKnown RBP9.49□□□□□ -0.89
NEDD9-208ENST00000504387 RUNDC1Q96C34 613 aa9.49□□□□□ -0.89
NEDD9-208ENST00000504387 ZNF830Q96NB3 372 aaPredicted RBP9.49□□□□□ -0.89
NEDD9-208ENST00000504387 FAM135AQ9P2D6 1515 aa9.49□□□□□ -0.89
NEDD9-208ENST00000504387 ADGRF5Q8IZF2 1346 aa9.48□□□□□ -0.89
NEDD9-208ENST00000504387 CCDC141Q6ZP82 1450 aa9.48□□□□□ -0.89
NEDD9-208ENST00000504387 PRIM1P49642 420 aaKnown RBP9.48□□□□□ -0.89
NEDD9-208ENST00000504387 SRPK2P78362 688 aaKnown RBP9.48□□□□□ -0.89
NEDD9-208ENST00000504387 RBSNQ9H1K0 784 aa9.48□□□□□ -0.89
NEDD9-208ENST00000504387 FBLN1P23142 703 aa9.48□□□□□ -0.89
NEDD9-208ENST00000504387 SHROOM2Q13796 1616 aa9.47□□□□□ -0.89
NEDD9-208ENST00000504387 SYCP2Q9BX26 1530 aa9.47□□□□□ -0.89
NEDD9-208ENST00000504387 CCDC173Q0VFZ6 552 aa9.47□□□□□ -0.89
NEDD9-208ENST00000504387 C17orf53Q8N3J3 647 aaPredicted RBP9.47□□□□□ -0.89
NEDD9-208ENST00000504387 THUMPD2Q9BTF0 503 aaKnown RBP9.47□□□□□ -0.89
NEDD9-208ENST00000504387 WDR7Q9Y4E6 1490 aa9.47□□□□□ -0.89
NEDD9-208ENST00000504387 INSRP06213 1382 aa9.47□□□□□ -0.89
NEDD9-208ENST00000504387 BAG4O95429 457 aaKnown RBP9.46□□□□□ -0.89
NEDD9-208ENST00000504387 CABP2Q9NPB3 220 aa9.46□□□□□ -0.89
NEDD9-208ENST00000504387 SYCE3A1L190 88 aa9.46□□□□□ -0.89
NEDD9-208ENST00000504387 RAB3GAP1Q15042 981 aa9.46□□□□□ -0.89
NEDD9-208ENST00000504387 CFAP53Q96M91 514 aa9.46□□□□□ -0.89
NEDD9-208ENST00000504387 ZGPATQ8N5A5 531 aaKnown RBP9.46□□□□□ -0.9
NEDD9-208ENST00000504387 AK9Q5TCS8 1911 aa9.45□□□□□ -0.9
NEDD9-208ENST00000504387 K7ELQ4 463 aaPredicted RBP9.45□□□□□ -0.9
NEDD9-208ENST00000504387 OFD1O75665 1012 aa9.45□□□□□ -0.9
NEDD9-208ENST00000504387 CBX1P83916 185 aa9.45□□□□□ -0.9
NEDD9-208ENST00000504387 GGNBP2Q9H3C7 697 aa9.45□□□□□ -0.9
NEDD9-208ENST00000504387 STAG3Q9UJ98 1225 aa9.45□□□□□ -0.9
NEDD9-208ENST00000504387 PLA2R1Q13018 1463 aa9.45□□□□□ -0.9
NEDD9-208ENST00000504387 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.45□□□□□ -0.9
NEDD9-208ENST00000504387 TBC1D9Q6ZT07 1266 aa9.45□□□□□ -0.9
NEDD9-208ENST00000504387 ADGRL2O95490 1459 aa9.45□□□□□ -0.9
NEDD9-208ENST00000504387 ZSCAN23Q3MJ62 389 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 CHD1LQ86WJ1 897 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 C16orf71Q8IYS4 520 aaPredicted RBP9.44□□□□□ -0.9
NEDD9-208ENST00000504387 GDPD2Q9HCC8 539 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 NSFL1CQ9UNZ2 370 aaKnown RBP9.44□□□□□ -0.9
NEDD9-208ENST00000504387 ABCA8O94911 1581 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 ERCC6L2Q5T890 1561 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 KANK1Q14678 1352 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 ATAD2Q6PL18 1390 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 MAPK8IP2Q13387 824 aaPredicted RBP9.44□□□□□ -0.9
NEDD9-208ENST00000504387 ATF7IPQ6VMQ6 1270 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 E9PCH4 1651 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 KDM5DQ9BY66 1539 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 ARHGEF12Q9NZN5 1544 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms