RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ORAI2Q96SN7 254 aa21.85■■□□□ 1.09
PRPF40A-211ENST00000493468 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.85■■□□□ 1.09
PRPF40A-211ENST00000493468 CDC42BPGQ6DT37 1551 aa21.84■■□□□ 1.09
PRPF40A-211ENST00000493468 HFM1A2PYH4 1435 aa21.84■■□□□ 1.09
PRPF40A-211ENST00000493468 BCL9LQ86UU0 1499 aa21.83■■□□□ 1.08
PRPF40A-211ENST00000493468 PXDNQ92626 1479 aa21.81■■□□□ 1.08
PRPF40A-211ENST00000493468 NPHP3Q7Z494 1330 aa21.8■■□□□ 1.08
PRPF40A-211ENST00000493468 PPLO60437 1756 aa21.79■■□□□ 1.08
PRPF40A-211ENST00000493468 VGFO15240 615 aaPredicted RBP21.79■■□□□ 1.08
PRPF40A-211ENST00000493468 RPGRIP1LQ68CZ1 1315 aa21.75■■□□□ 1.07
PRPF40A-211ENST00000493468 ITGAEP38570 1179 aa21.74■■□□□ 1.07
PRPF40A-211ENST00000493468 GJD4Q96KN9 370 aaPredicted RBP21.74■■□□□ 1.07
PRPF40A-211ENST00000493468 GLI3P10071 1580 aa21.73■■□□□ 1.07
PRPF40A-211ENST00000493468 BLMP54132 1417 aaPredicted RBP21.72■■□□□ 1.07
PRPF40A-211ENST00000493468 LRPPRCP42704 1394 aaKnown RBP21.72■■□□□ 1.07
PRPF40A-211ENST00000493468 SLIT2O94813 1529 aa21.71■■□□□ 1.07
PRPF40A-211ENST00000493468 BRWD3Q6RI45 1802 aa21.71■■□□□ 1.07
PRPF40A-211ENST00000493468 LRP5O75197 1615 aa21.7■■□□□ 1.06
PRPF40A-211ENST00000493468 ESCO1Q5FWF5 840 aa21.7■■□□□ 1.06
PRPF40A-211ENST00000493468 RALGAPBQ86X10 1494 aa21.7■■□□□ 1.06
PRPF40A-211ENST00000493468 KIF1AQ12756 1690 aa21.69■■□□□ 1.06
PRPF40A-211ENST00000493468 TECPR2O15040 1411 aa21.69■■□□□ 1.06
PRPF40A-211ENST00000493468 USP32Q8NFA0 1604 aa21.69■■□□□ 1.06
PRPF40A-211ENST00000493468 KNDC1Q76NI1 1749 aa21.69■■□□□ 1.06
PRPF40A-211ENST00000493468 NAIPQ13075 1403 aa21.68■■□□□ 1.06
PRPF40A-211ENST00000493468 FMN2Q9NZ56 1722 aa21.66■■□□□ 1.06
PRPF40A-211ENST00000493468 FOXO3O43524 673 aa21.66■■□□□ 1.06
PRPF40A-211ENST00000493468 UNC5CLQ8IV45 518 aa21.66■■□□□ 1.06
PRPF40A-211ENST00000493468 NWD2Q9ULI1 1742 aa21.65■■□□□ 1.06
PRPF40A-211ENST00000493468 CCDC144AA2RUR9 1427 aa21.63■■□□□ 1.05
PRPF40A-211ENST00000493468 SPATA31A3Q5VYP0 1347 aa21.62■■□□□ 1.05
PRPF40A-211ENST00000493468 XPCQ01831 940 aaPredicted RBP21.62■■□□□ 1.05
PRPF40A-211ENST00000493468 IFT172Q9UG01 1749 aa21.62■■□□□ 1.05
PRPF40A-211ENST00000493468 PLCH1Q4KWH8 1693 aa21.62■■□□□ 1.05
PRPF40A-211ENST00000493468 RRBP1Q9P2E9 1410 aaKnown RBP21.6■■□□□ 1.05
PRPF40A-211ENST00000493468 ABCA3Q99758 1704 aa21.6■■□□□ 1.05
PRPF40A-211ENST00000493468 ABCC11Q96J66 1382 aa21.59■■□□□ 1.05
PRPF40A-211ENST00000493468 SF3B2Q13435 895 aaKnown RBP21.57■■□□□ 1.04
PRPF40A-211ENST00000493468 VPS72Q15906 364 aa21.56■■□□□ 1.04
PRPF40A-211ENST00000493468 DEFB132Q7Z7B7 95 aa21.56■■□□□ 1.04
PRPF40A-211ENST00000493468 TNS3Q68CZ2 1445 aa21.55■■□□□ 1.04
PRPF40A-211ENST00000493468 ONECUT3O60422 494 aaPredicted RBP21.55■■□□□ 1.04
PRPF40A-211ENST00000493468 SEPT12Q8IYM1 358 aa21.55■■□□□ 1.04
PRPF40A-211ENST00000493468 RGPD8O14715 1765 aaPredicted RBP21.55■■□□□ 1.04
PRPF40A-211ENST00000493468 ADGRF5Q8IZF2 1346 aa21.55■■□□□ 1.04
PRPF40A-211ENST00000493468 WAPLQ7Z5K2 1190 aa21.54■■□□□ 1.04
PRPF40A-211ENST00000493468 ANKRD30BQ9BXX2 1392 aa21.53■■□□□ 1.04
PRPF40A-211ENST00000493468 PLEKHH1Q9ULM0 1364 aa21.53■■□□□ 1.04
PRPF40A-211ENST00000493468 NUTM2FA1L443 756 aa21.53■■□□□ 1.04
PRPF40A-211ENST00000493468 SLC4A1APQ9BWU0 796 aaKnown RBP21.53■■□□□ 1.04
PRPF40A-211ENST00000493468 PIK3C2GO75747 1445 aa21.52■■□□□ 1.04
PRPF40A-211ENST00000493468 SPATA31E1Q6ZUB1 1445 aa21.52■■□□□ 1.04
PRPF40A-211ENST00000493468 KRT28Q7Z3Y7 464 aa21.51■■□□□ 1.03
PRPF40A-211ENST00000493468 STK26Q9P289 416 aa21.51■■□□□ 1.03
PRPF40A-211ENST00000493468 NRAPQ86VF7 1730 aa21.51■■□□□ 1.03
PRPF40A-211ENST00000493468 SBNO1A3KN83 1393 aa21.5■■□□□ 1.03
PRPF40A-211ENST00000493468 YTHDC2Q9H6S0 1430 aaKnown RBP21.5■■□□□ 1.03
PRPF40A-211ENST00000493468 KRT27Q7Z3Y8 459 aa21.49■■□□□ 1.03
PRPF40A-211ENST00000493468 SIRT1Q96EB6 747 aa21.49■■□□□ 1.03
PRPF40A-211ENST00000493468 NRXN1Q9ULB1 1477 aa21.49■■□□□ 1.03
PRPF40A-211ENST00000493468 RGPD1P0DJD0 1748 aa21.49■■□□□ 1.03
PRPF40A-211ENST00000493468 ARHGEF10O15013 1369 aa21.48■■□□□ 1.03
PRPF40A-211ENST00000493468 PSME1Q06323 249 aa21.48■■□□□ 1.03
PRPF40A-211ENST00000493468 HAP1P54257 671 aaPredicted RBP21.47■■□□□ 1.03
PRPF40A-211ENST00000493468 BAG6P46379 1132 aa21.46■■□□□ 1.03
PRPF40A-211ENST00000493468 PHF8Q9UPP1 1060 aa21.46■■□□□ 1.03
PRPF40A-211ENST00000493468 TMEM132EQ6IEE7 984 aa21.44■■□□□ 1.02
PRPF40A-211ENST00000493468 PPARGC1BQ86YN6 1023 aaKnown RBP21.44■■□□□ 1.02
PRPF40A-211ENST00000493468 HRCP23327 699 aa21.43■■□□□ 1.02
PRPF40A-211ENST00000493468 CABLES1Q8TDN4 633 aa21.43■■□□□ 1.02
PRPF40A-211ENST00000493468 CCDC9Q9Y3X0 531 aaKnown RBP21.43■■□□□ 1.02
PRPF40A-211ENST00000493468 TRPM3Q9HCF6 1732 aaPredicted RBP21.43■■□□□ 1.02
PRPF40A-211ENST00000493468 COL14A1Q05707 1796 aaKnown RBP21.43■■□□□ 1.02
PRPF40A-211ENST00000493468 ADGRB2O60241 1585 aa21.41■■□□□ 1.02
PRPF40A-211ENST00000493468 DISP2A7MBM2 1401 aa21.41■■□□□ 1.02
PRPF40A-211ENST00000493468 ANKARQ7Z5J8 1434 aa21.41■■□□□ 1.02
PRPF40A-211ENST00000493468 TNS1Q9HBL0 1735 aaKnown RBP21.41■■□□□ 1.02
PRPF40A-211ENST00000493468 ALS2Q96Q42 1657 aa21.4■■□□□ 1.02
PRPF40A-211ENST00000493468 RGL3Q3MIN7 710 aa21.4■■□□□ 1.02
PRPF40A-211ENST00000493468 PSDA5PKW4 1024 aaPredicted RBP21.39■■□□□ 1.01
PRPF40A-211ENST00000493468 FAM83GA6ND36 823 aa21.39■■□□□ 1.01
PRPF40A-211ENST00000493468 THSD7AQ9UPZ6 1657 aa21.39■■□□□ 1.01
PRPF40A-211ENST00000493468 DLC1Q96QB1 1528 aa21.38■■□□□ 1.01
PRPF40A-211ENST00000493468 CRYBG1Q9Y4K1 1723 aa21.38■■□□□ 1.01
PRPF40A-211ENST00000493468 C14orf93Q9H972 538 aaKnown RBP21.37■■□□□ 1.01
PRPF40A-211ENST00000493468 DHX57Q6P158 1386 aaKnown RBP21.36■■□□□ 1.01
PRPF40A-211ENST00000493468 A0A0G2JS52 829 aa21.35■■□□□ 1.01
PRPF40A-211ENST00000493468 MYT1Q01538 1121 aa21.35■■□□□ 1.01
PRPF40A-211ENST00000493468 FAM98CQ17RN3 349 aaKnown RBP21.35■■□□□ 1.01
PRPF40A-211ENST00000493468 LMOD2Q6P5Q4 547 aa21.34■■□□□ 1.01
PRPF40A-211ENST00000493468 BTG4Q9NY30 223 aa21.33■■□□□ 1.01
PRPF40A-211ENST00000493468 EN1Q05925 392 aaPredicted RBP21.32■■□□□ 1
PRPF40A-211ENST00000493468 SPATA31A5Q5VU36 1347 aa21.31■■□□□ 1
PRPF40A-211ENST00000493468 SPATA31A7Q8IWB4 1347 aa21.31■■□□□ 1
PRPF40A-211ENST00000493468 PLEKHG5O94827 1062 aa21.3■■□□□ 1
PRPF40A-211ENST00000493468 PRAM1Q96QH2 718 aa21.3■■□□□ 1
PRPF40A-211ENST00000493468 EIF3AQ14152 1382 aaKnown RBP21.29■■□□□ 1
PRPF40A-211ENST00000493468 MPHOSPH9Q99550 1183 aa21.29■■□□□ 1
PRPF40A-211ENST00000493468 GPRASP1Q5JY77 1395 aa21.28■■□□□ 1
PRPF40A-211ENST00000493468 R3HDM1Q15032 1099 aaKnown RBP21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms