RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 PYGBP11216 843 aa10.19□□□□□ -0.78
VPS52-219ENST00000493379 C1QTNF8P60827 252 aa10.19□□□□□ -0.78
VPS52-219ENST00000493379 C8orf37Q96NL8 207 aa10.19□□□□□ -0.78
VPS52-219ENST00000493379 BCL9LQ86UU0 1499 aa10.18□□□□□ -0.78
VPS52-219ENST00000493379 GTPBP6O43824 516 aaPredicted RBP10.18□□□□□ -0.78
VPS52-219ENST00000493379 ZNF784Q8NCA9 323 aaPredicted RBP10.18□□□□□ -0.78
VPS52-219ENST00000493379 SLAIN2Q9P270 581 aa10.18□□□□□ -0.78
VPS52-219ENST00000493379 ARHGAP31Q2M1Z3 1444 aa10.17□□□□□ -0.78
VPS52-219ENST00000493379 PRKCSHP14314 528 aaPredicted RBP10.17□□□□□ -0.78
VPS52-219ENST00000493379 NWD1Q149M9 1564 aa10.17□□□□□ -0.78
VPS52-219ENST00000493379 HFM1A2PYH4 1435 aa10.16□□□□□ -0.78
VPS52-219ENST00000493379 NAIPQ13075 1403 aa10.16□□□□□ -0.78
VPS52-219ENST00000493379 WASHC2CQ9Y4E1 1318 aa10.16□□□□□ -0.78
VPS52-219ENST00000493379 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.16□□□□□ -0.78
VPS52-219ENST00000493379 CCDC125Q86Z20 511 aa10.16□□□□□ -0.78
VPS52-219ENST00000493379 ZFP91Q96JP5 570 aaPredicted RBP10.16□□□□□ -0.78
VPS52-219ENST00000493379 MROH1Q8NDA8 1641 aa10.15□□□□□ -0.78
VPS52-219ENST00000493379 ACIN1Q9UKV3 1341 aaKnown RBP10.15□□□□□ -0.78
VPS52-219ENST00000493379 DIP2AQ14689 1571 aa10.15□□□□□ -0.78
VPS52-219ENST00000493379 PROSER2Q86WR7 435 aaPredicted RBP10.15□□□□□ -0.78
VPS52-219ENST00000493379 BCL11BQ9C0K0 894 aaPredicted RBP10.15□□□□□ -0.78
VPS52-219ENST00000493379 LMTK2Q8IWU2 1503 aa10.15□□□□□ -0.78
VPS52-219ENST00000493379 PRDM15P57071 1507 aaPredicted RBP10.14□□□□□ -0.79
VPS52-219ENST00000493379 SLC34A2O95436 690 aa10.14□□□□□ -0.79
VPS52-219ENST00000493379 CHADLQ6NUI6 762 aa10.14□□□□□ -0.79
VPS52-219ENST00000493379 NGLY1Q96IV0 654 aa10.14□□□□□ -0.79
VPS52-219ENST00000493379 LTKP29376 864 aa10.13□□□□□ -0.79
VPS52-219ENST00000493379 STK24Q9Y6E0 443 aa10.13□□□□□ -0.79
VPS52-219ENST00000493379 ABCC3O15438 1527 aa10.12□□□□□ -0.79
VPS52-219ENST00000493379 PZPP20742 1482 aa10.12□□□□□ -0.79
VPS52-219ENST00000493379 NLRP1Q9C000 1473 aa10.12□□□□□ -0.79
VPS52-219ENST00000493379 ITGAEP38570 1179 aa10.12□□□□□ -0.79
VPS52-219ENST00000493379 AHDC1Q5TGY3 1603 aaPredicted RBP10.11□□□□□ -0.79
VPS52-219ENST00000493379 SCAF11Q99590 1463 aaKnown RBP10.11□□□□□ -0.79
VPS52-219ENST00000493379 FARP1Q9Y4F1 1045 aaPredicted RBP10.11□□□□□ -0.79
VPS52-219ENST00000493379 CAMTA1Q9Y6Y1 1673 aa10.11□□□□□ -0.79
VPS52-219ENST00000493379 KANK1Q14678 1352 aa10.11□□□□□ -0.79
VPS52-219ENST00000493379 BLMP54132 1417 aaPredicted RBP10.1□□□□□ -0.79
VPS52-219ENST00000493379 MSH6P52701 1360 aa10.1□□□□□ -0.79
VPS52-219ENST00000493379 TSPYL2Q9H2G4 693 aaPredicted RBP10.09□□□□□ -0.79
VPS52-219ENST00000493379 RPRD2Q5VT52 1461 aaKnown RBP10.09□□□□□ -0.79
VPS52-219ENST00000493379 NUP155O75694 1391 aa10.08□□□□□ -0.8
VPS52-219ENST00000493379 UNC13BO14795 1591 aa10.08□□□□□ -0.8
VPS52-219ENST00000493379 KDM5AP29375 1690 aaKnown RBP10.08□□□□□ -0.8
VPS52-219ENST00000493379 NOS1P29475 1434 aa10.07□□□□□ -0.8
VPS52-219ENST00000493379 ADAMTS2O95450 1211 aa10.07□□□□□ -0.8
VPS52-219ENST00000493379 R3HDM1Q15032 1099 aaKnown RBP10.07□□□□□ -0.8
VPS52-219ENST00000493379 TXNDC2Q86VQ3 553 aa10.07□□□□□ -0.8
VPS52-219ENST00000493379 RYDENQ9NUL5 291 aaKnown RBP10.07□□□□□ -0.8
VPS52-219ENST00000493379 UBR1Q8IWV7 1749 aa10.07□□□□□ -0.8
VPS52-219ENST00000493379 SETD5Q9C0A6 1442 aa10.07□□□□□ -0.8
VPS52-219ENST00000493379 KCNA6P17658 529 aa10.06□□□□□ -0.8
VPS52-219ENST00000493379 TPRNQ4KMQ1 711 aa10.06□□□□□ -0.8
VPS52-219ENST00000493379 ZNF467Q7Z7K2 595 aaPredicted RBP10.06□□□□□ -0.8
VPS52-219ENST00000493379 SLC52A1Q9NWF4 448 aa10.06□□□□□ -0.8
VPS52-219ENST00000493379 USP21Q9UK80 565 aa10.06□□□□□ -0.8
VPS52-219ENST00000493379 ERVK-7P63135 1459 aa10.05□□□□□ -0.8
VPS52-219ENST00000493379 UTRNP46939 3433 aa10.05□□□□□ -0.8
VPS52-219ENST00000493379 GCC2Q8IWJ2 1684 aa10.04□□□□□ -0.8
VPS52-219ENST00000493379 PRKAR2AP13861 404 aaKnown RBP10.04□□□□□ -0.8
VPS52-219ENST00000493379 TRPC5Q9UL62 973 aaPredicted RBP10.04□□□□□ -0.8
VPS52-219ENST00000493379 IQGAP3Q86VI3 1631 aa10.04□□□□□ -0.8
VPS52-219ENST00000493379 EFCAB6Q5THR3 1501 aa10.03□□□□□ -0.8
VPS52-219ENST00000493379 BRWD3Q6RI45 1802 aa10.03□□□□□ -0.8
VPS52-219ENST00000493379 ATRNO75882 1429 aa10.03□□□□□ -0.8
VPS52-219ENST00000493379 IDI1Q13907 227 aa10.03□□□□□ -0.8
VPS52-219ENST00000493379 SLC26A8Q96RN1 970 aa10.03□□□□□ -0.8
VPS52-219ENST00000493379 CFAP65Q6ZU64 1925 aaKnown RBP10.03□□□□□ -0.8
VPS52-219ENST00000493379 TRIM26Q12899 539 aaPredicted RBP10.02□□□□□ -0.81
VPS52-219ENST00000493379 SF3B2Q13435 895 aaKnown RBP10.02□□□□□ -0.81
VPS52-219ENST00000493379 NBR1Q14596 966 aa10.02□□□□□ -0.81
VPS52-219ENST00000493379 CCDC61Q9Y6R9 512 aa10.02□□□□□ -0.81
VPS52-219ENST00000493379 ARHGAP23Q9P227 1491 aa10.02□□□□□ -0.81
VPS52-219ENST00000493379 TET3O43151 1660 aa10.02□□□□□ -0.81
VPS52-219ENST00000493379 RAB3GAP2Q9H2M9 1393 aa10.01□□□□□ -0.81
VPS52-219ENST00000493379 FXR2P51116 673 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS52-219ENST00000493379 PDAP1Q13442 181 aaKnown RBP10.01□□□□□ -0.81
VPS52-219ENST00000493379 MPHOSPH9Q99550 1183 aa10.01□□□□□ -0.81
VPS52-219ENST00000493379 NKTRP30414 1462 aaKnown RBP10□□□□□ -0.81
VPS52-219ENST00000493379 CEP152O94986 1710 aa10□□□□□ -0.81
VPS52-219ENST00000493379 BRINP3Q76B58 766 aa10□□□□□ -0.81
VPS52-219ENST00000493379 DDX17Q92841 729 aaKnown RBP10□□□□□ -0.81
VPS52-219ENST00000493379 SLIT1O75093 1534 aa10□□□□□ -0.81
VPS52-219ENST00000493379 PNPLA6Q8IY17 1366 aa10□□□□□ -0.81
VPS52-219ENST00000493379 PCDHB8Q9UN66 801 aa9.99□□□□□ -0.81
VPS52-219ENST00000493379 PCDHB13Q9Y5F0 798 aa9.99□□□□□ -0.81
VPS52-219ENST00000493379 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.98□□□□□ -0.81
VPS52-219ENST00000493379 ZNF579Q8NAF0 562 aaKnown RBP9.97□□□□□ -0.81
VPS52-219ENST00000493379 E9PCH4 1651 aa9.96□□□□□ -0.81
VPS52-219ENST00000493379 EN1Q05925 392 aaPredicted RBP9.96□□□□□ -0.82
VPS52-219ENST00000493379 PIK3C2BO00750 1634 aa9.96□□□□□ -0.82
VPS52-219ENST00000493379 C14orf37Q86TY3 774 aa9.95□□□□□ -0.82
VPS52-219ENST00000493379 FNBP4Q8N3X1 1017 aaPredicted RBP9.95□□□□□ -0.82
VPS52-219ENST00000493379 EID1Q9Y6B2 187 aa9.95□□□□□ -0.82
VPS52-219ENST00000493379 TMEM2Q9UHN6 1383 aa9.95□□□□□ -0.82
VPS52-219ENST00000493379 CHD4Q14839 1912 aa9.94□□□□□ -0.82
VPS52-219ENST00000493379 ASXL1Q8IXJ9 1541 aa9.94□□□□□ -0.82
VPS52-219ENST00000493379 GIGYF1O75420 1035 aaPredicted RBP9.94□□□□□ -0.82
VPS52-219ENST00000493379 BAG6P46379 1132 aa9.94□□□□□ -0.82
VPS52-219ENST00000493379 PSEN1P49768 467 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms