RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 COL22A1Q8NFW1 1626 aaPredicted RBP23.48■■□□□ 1.35
CHCHD3-204ENST00000457942 PPLO60437 1756 aa23.48■■□□□ 1.35
CHCHD3-204ENST00000457942 VGFO15240 615 aaPredicted RBP23.48■■□□□ 1.35
CHCHD3-204ENST00000457942 CCDC144AA2RUR9 1427 aa23.46■■□□□ 1.35
CHCHD3-204ENST00000457942 RPGRIP1LQ68CZ1 1315 aa23.45■■□□□ 1.34
CHCHD3-204ENST00000457942 XPCQ01831 940 aaPredicted RBP23.45■■□□□ 1.34
CHCHD3-204ENST00000457942 ZRANB1Q9UGI0 708 aa23.45■■□□□ 1.34
CHCHD3-204ENST00000457942 MYOM2P54296 1465 aa23.44■■□□□ 1.34
CHCHD3-204ENST00000457942 FNBP4Q8N3X1 1017 aaPredicted RBP23.42■■□□□ 1.34
CHCHD3-204ENST00000457942 MPHOSPH9Q99550 1183 aa23.42■■□□□ 1.34
CHCHD3-204ENST00000457942 MARF1Q9Y4F3 1742 aaKnown RBP23.42■■□□□ 1.34
CHCHD3-204ENST00000457942 ESCO1Q5FWF5 840 aa23.4■■□□□ 1.34
CHCHD3-204ENST00000457942 PXDNQ92626 1479 aa23.4■■□□□ 1.34
CHCHD3-204ENST00000457942 CDC42BPGQ6DT37 1551 aa23.4■■□□□ 1.34
CHCHD3-204ENST00000457942 BCL9LQ86UU0 1499 aa23.39■■□□□ 1.34
CHCHD3-204ENST00000457942 NUTM2FA1L443 756 aa23.39■■□□□ 1.33
CHCHD3-204ENST00000457942 RGL3Q3MIN7 710 aa23.38■■□□□ 1.33
CHCHD3-204ENST00000457942 NPHP3Q7Z494 1330 aa23.36■■□□□ 1.33
CHCHD3-204ENST00000457942 PRAG1Q86YV5 1406 aa23.35■■□□□ 1.33
CHCHD3-204ENST00000457942 ACIN1Q9UKV3 1341 aaKnown RBP23.34■■□□□ 1.33
CHCHD3-204ENST00000457942 IFT172Q9UG01 1749 aa23.34■■□□□ 1.33
CHCHD3-204ENST00000457942 FOXO3O43524 673 aa23.34■■□□□ 1.33
CHCHD3-204ENST00000457942 GLI3P10071 1580 aa23.33■■□□□ 1.33
CHCHD3-204ENST00000457942 PLEKHG5O94827 1062 aa23.32■■□□□ 1.32
CHCHD3-204ENST00000457942 GJD4Q96KN9 370 aaPredicted RBP23.32■■□□□ 1.32
CHCHD3-204ENST00000457942 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.32■■□□□ 1.32
CHCHD3-204ENST00000457942 SPATA31E1Q6ZUB1 1445 aa23.32■■□□□ 1.32
CHCHD3-204ENST00000457942 ADGRF5Q8IZF2 1346 aa23.32■■□□□ 1.32
CHCHD3-204ENST00000457942 RALGAPBQ86X10 1494 aa23.31■■□□□ 1.32
CHCHD3-204ENST00000457942 ANKRD30BQ9BXX2 1392 aa23.3■■□□□ 1.32
CHCHD3-204ENST00000457942 STK26Q9P289 416 aa23.3■■□□□ 1.32
CHCHD3-204ENST00000457942 RAB3GAP2Q9H2M9 1393 aa23.29■■□□□ 1.32
CHCHD3-204ENST00000457942 BRWD3Q6RI45 1802 aa23.28■■□□□ 1.32
CHCHD3-204ENST00000457942 USP32Q8NFA0 1604 aa23.27■■□□□ 1.32
CHCHD3-204ENST00000457942 DEFB132Q7Z7B7 95 aa23.27■■□□□ 1.32
CHCHD3-204ENST00000457942 BLMP54132 1417 aaPredicted RBP23.26■■□□□ 1.31
CHCHD3-204ENST00000457942 WAPLQ7Z5K2 1190 aa23.26■■□□□ 1.31
CHCHD3-204ENST00000457942 CCDC125Q86Z20 511 aa23.26■■□□□ 1.31
CHCHD3-204ENST00000457942 PLEKHH1Q9ULM0 1364 aa23.26■■□□□ 1.31
CHCHD3-204ENST00000457942 FMN2Q9NZ56 1722 aa23.25■■□□□ 1.31
CHCHD3-204ENST00000457942 SLIT2O94813 1529 aa23.24■■□□□ 1.31
CHCHD3-204ENST00000457942 UNC5CLQ8IV45 518 aa23.24■■□□□ 1.31
CHCHD3-204ENST00000457942 LRPPRCP42704 1394 aaKnown RBP23.23■■□□□ 1.31
CHCHD3-204ENST00000457942 PIK3C2GO75747 1445 aa23.23■■□□□ 1.31
CHCHD3-204ENST00000457942 KIF1AQ12756 1690 aa23.22■■□□□ 1.31
CHCHD3-204ENST00000457942 PLCH1Q4KWH8 1693 aa23.22■■□□□ 1.31
CHCHD3-204ENST00000457942 KNDC1Q76NI1 1749 aa23.22■■□□□ 1.31
CHCHD3-204ENST00000457942 HAP1P54257 671 aaPredicted RBP23.21■■□□□ 1.31
CHCHD3-204ENST00000457942 TMEM132EQ6IEE7 984 aa23.2■■□□□ 1.3
CHCHD3-204ENST00000457942 SPATA31A3Q5VYP0 1347 aa23.19■■□□□ 1.3
CHCHD3-204ENST00000457942 CCDC9Q9Y3X0 531 aaKnown RBP23.19■■□□□ 1.3
CHCHD3-204ENST00000457942 TECPR2O15040 1411 aa23.18■■□□□ 1.3
CHCHD3-204ENST00000457942 SF3B2Q13435 895 aaKnown RBP23.18■■□□□ 1.3
CHCHD3-204ENST00000457942 CABLES1Q8TDN4 633 aa23.18■■□□□ 1.3
CHCHD3-204ENST00000457942 ABCA3Q99758 1704 aa23.18■■□□□ 1.3
CHCHD3-204ENST00000457942 SEPT12Q8IYM1 358 aa23.17■■□□□ 1.3
CHCHD3-204ENST00000457942 A0A0G2JS52 829 aa23.16■■□□□ 1.3
CHCHD3-204ENST00000457942 MYT1Q01538 1121 aa23.16■■□□□ 1.3
CHCHD3-204ENST00000457942 TNS3Q68CZ2 1445 aa23.16■■□□□ 1.3
CHCHD3-204ENST00000457942 YTHDC2Q9H6S0 1430 aaKnown RBP23.16■■□□□ 1.3
CHCHD3-204ENST00000457942 LRP5O75197 1615 aa23.15■■□□□ 1.3
CHCHD3-204ENST00000457942 RGPD8O14715 1765 aaPredicted RBP23.15■■□□□ 1.3
CHCHD3-204ENST00000457942 KRT28Q7Z3Y7 464 aa23.15■■□□□ 1.3
CHCHD3-204ENST00000457942 ABCC11Q96J66 1382 aa23.14■■□□□ 1.3
CHCHD3-204ENST00000457942 PSDA5PKW4 1024 aaPredicted RBP23.14■■□□□ 1.29
CHCHD3-204ENST00000457942 LMOD2Q6P5Q4 547 aa23.14■■□□□ 1.29
CHCHD3-204ENST00000457942 NRXN1Q9ULB1 1477 aa23.11■■□□□ 1.29
CHCHD3-204ENST00000457942 NWD2Q9ULI1 1742 aa23.11■■□□□ 1.29
CHCHD3-204ENST00000457942 CFAP70Q5T0N1 1121 aa23.1■■□□□ 1.29
CHCHD3-204ENST00000457942 C14orf93Q9H972 538 aaKnown RBP23.1■■□□□ 1.29
CHCHD3-204ENST00000457942 DHX57Q6P158 1386 aaKnown RBP23.1■■□□□ 1.29
CHCHD3-204ENST00000457942 VPS72Q15906 364 aa23.09■■□□□ 1.29
CHCHD3-204ENST00000457942 KRT27Q7Z3Y8 459 aa23.09■■□□□ 1.29
CHCHD3-204ENST00000457942 SAFB2Q14151 953 aaKnown RBP eCLIP23.08■■□□□ 1.29
CHCHD3-204ENST00000457942 PHF8Q9UPP1 1060 aa23.07■■□□□ 1.28
CHCHD3-204ENST00000457942 NRAPQ86VF7 1730 aa23.06■■□□□ 1.28
CHCHD3-204ENST00000457942 KDM2AQ9Y2K7 1162 aa23.05■■□□□ 1.28
CHCHD3-204ENST00000457942 FAM98CQ17RN3 349 aaKnown RBP23.04■■□□□ 1.28
CHCHD3-204ENST00000457942 PSME1Q06323 249 aa23.03■■□□□ 1.28
CHCHD3-204ENST00000457942 FAM182BQ5T319 152 aa23.03■■□□□ 1.28
CHCHD3-204ENST00000457942 HRCP23327 699 aa23.02■■□□□ 1.28
CHCHD3-204ENST00000457942 BAG6P46379 1132 aa23.02■■□□□ 1.28
CHCHD3-204ENST00000457942 PMFBP1Q8TBY8 1022 aa23.02■■□□□ 1.28
CHCHD3-204ENST00000457942 DCAF11Q8TEB1 546 aa23.02■■□□□ 1.28
CHCHD3-204ENST00000457942 PRAM1Q96QH2 718 aa23.02■■□□□ 1.28
CHCHD3-204ENST00000457942 POGKQ9P215 609 aa23.02■■□□□ 1.28
CHCHD3-204ENST00000457942 SIRT1Q96EB6 747 aa23.01■■□□□ 1.27
CHCHD3-204ENST00000457942 ARHGEF10O15013 1369 aa23.01■■□□□ 1.27
CHCHD3-204ENST00000457942 FAM83GA6ND36 823 aa23■■□□□ 1.27
CHCHD3-204ENST00000457942 SBNO1A3KN83 1393 aa23■■□□□ 1.27
CHCHD3-204ENST00000457942 DLC1Q96QB1 1528 aa22.99■■□□□ 1.27
CHCHD3-204ENST00000457942 RGPD1P0DJD0 1748 aa22.99■■□□□ 1.27
CHCHD3-204ENST00000457942 EN1Q05925 392 aaPredicted RBP22.98■■□□□ 1.27
CHCHD3-204ENST00000457942 BTG4Q9NY30 223 aa22.98■■□□□ 1.27
CHCHD3-204ENST00000457942 ADGRB1O14514 1584 aa22.97■■□□□ 1.27
CHCHD3-204ENST00000457942 TRPM3Q9HCF6 1732 aaPredicted RBP22.97■■□□□ 1.27
CHCHD3-204ENST00000457942 ONECUT3O60422 494 aaPredicted RBP22.96■■□□□ 1.27
CHCHD3-204ENST00000457942 TRAK1Q9UPV9 953 aa22.96■■□□□ 1.27
CHCHD3-204ENST00000457942 COL14A1Q05707 1796 aaKnown RBP22.96■■□□□ 1.27
CHCHD3-204ENST00000457942 R3HDM1Q15032 1099 aaKnown RBP22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms