RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 NALCNQ8IZF0 1738 aa11.42□□□□□ -0.58
HPS4-206ENST00000439453 KIAA1210Q9ULL0 1709 aa11.42□□□□□ -0.58
HPS4-206ENST00000439453 NKTRP30414 1462 aaKnown RBP11.42□□□□□ -0.58
HPS4-206ENST00000439453 RPGRIP1LQ68CZ1 1315 aa11.42□□□□□ -0.58
HPS4-206ENST00000439453 METP08581 1390 aa11.41□□□□□ -0.58
HPS4-206ENST00000439453 ADGRB1O14514 1584 aa11.41□□□□□ -0.58
HPS4-206ENST00000439453 ADGRF5Q8IZF2 1346 aa11.41□□□□□ -0.58
HPS4-206ENST00000439453 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.41□□□□□ -0.58
HPS4-206ENST00000439453 RTN4Q9NQC3 1192 aaKnown RBP11.41□□□□□ -0.58
HPS4-206ENST00000439453 SLC26A8Q96RN1 970 aa11.41□□□□□ -0.58
HPS4-206ENST00000439453 NPM2Q86SE8 214 aaKnown RBP11.4□□□□□ -0.58
HPS4-206ENST00000439453 USP35Q9P2H5 1018 aa11.4□□□□□ -0.58
HPS4-206ENST00000439453 NEFMP07197 916 aa11.39□□□□□ -0.59
HPS4-206ENST00000439453 ZNF326Q5BKZ1 582 aaKnown RBP11.39□□□□□ -0.59
HPS4-206ENST00000439453 SENP3Q9H4L4 574 aaPredicted RBP11.39□□□□□ -0.59
HPS4-206ENST00000439453 TBX22Q9Y458 520 aa11.39□□□□□ -0.59
HPS4-206ENST00000439453 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.39□□□□□ -0.59
HPS4-206ENST00000439453 TRPM1Q7Z4N2 1603 aa11.39□□□□□ -0.59
HPS4-206ENST00000439453 PIK3R4Q99570 1358 aa11.39□□□□□ -0.59
HPS4-206ENST00000439453 LAS1LQ9Y4W2 734 aaKnown RBP11.39□□□□□ -0.59
HPS4-206ENST00000439453 CNGB1Q14028 1251 aaPredicted RBP11.38□□□□□ -0.59
HPS4-206ENST00000439453 CERKQ8TCT0 537 aa11.38□□□□□ -0.59
HPS4-206ENST00000439453 TCERG1O14776 1098 aaKnown RBP11.38□□□□□ -0.59
HPS4-206ENST00000439453 ARHGEF28Q8N1W1 1705 aaKnown RBP11.38□□□□□ -0.59
HPS4-206ENST00000439453 RGL3Q3MIN7 710 aa11.37□□□□□ -0.59
HPS4-206ENST00000439453 SENP3-EIF4A1A0A087X0R7 540 aa11.37□□□□□ -0.59
HPS4-206ENST00000439453 PDE4AP27815 886 aa11.36□□□□□ -0.59
HPS4-206ENST00000439453 PNISRQ8TF01 805 aaKnown RBP11.36□□□□□ -0.59
HPS4-206ENST00000439453 KCNA6P17658 529 aa11.36□□□□□ -0.59
HPS4-206ENST00000439453 TECPR2O15040 1411 aa11.35□□□□□ -0.59
HPS4-206ENST00000439453 PPM1GO15355 546 aaPredicted RBP11.35□□□□□ -0.59
HPS4-206ENST00000439453 HDGFP51858 240 aaKnown RBP11.35□□□□□ -0.59
HPS4-206ENST00000439453 PTCH1Q13635 1447 aa11.35□□□□□ -0.59
HPS4-206ENST00000439453 VGFO15240 615 aaPredicted RBP11.34□□□□□ -0.59
HPS4-206ENST00000439453 RRP1P56182 461 aaKnown RBP11.34□□□□□ -0.59
HPS4-206ENST00000439453 EXOC6Q8TAG9 804 aa11.34□□□□□ -0.59
HPS4-206ENST00000439453 POLR3GLQ9BT43 218 aa11.34□□□□□ -0.59
HPS4-206ENST00000439453 BACH2Q9BYV9 841 aa11.34□□□□□ -0.59
HPS4-206ENST00000439453 TMC1Q8TDI8 760 aa11.33□□□□□ -0.6
HPS4-206ENST00000439453 MS4A1P11836 297 aa11.33□□□□□ -0.6
HPS4-206ENST00000439453 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.32□□□□□ -0.6
HPS4-206ENST00000439453 TMEM94Q12767 1356 aa11.32□□□□□ -0.6
HPS4-206ENST00000439453 ROBO2Q9HCK4 1378 aa11.32□□□□□ -0.6
HPS4-206ENST00000439453 DLC1Q96QB1 1528 aa11.32□□□□□ -0.6
HPS4-206ENST00000439453 C14orf93Q9H972 538 aaKnown RBP11.31□□□□□ -0.6
HPS4-206ENST00000439453 NCOA3Q9Y6Q9 1424 aa11.31□□□□□ -0.6
HPS4-206ENST00000439453 RGPD8O14715 1765 aaPredicted RBP11.31□□□□□ -0.6
HPS4-206ENST00000439453 USP47Q96K76 1375 aa11.3□□□□□ -0.6
HPS4-206ENST00000439453 YTHDC2Q9H6S0 1430 aaKnown RBP11.3□□□□□ -0.6
HPS4-206ENST00000439453 ROBO1Q9Y6N7 1651 aa11.3□□□□□ -0.6
HPS4-206ENST00000439453 FMN2Q9NZ56 1722 aa11.3□□□□□ -0.6
HPS4-206ENST00000439453 RBM33Q96EV2 1170 aaKnown RBP11.3□□□□□ -0.6
HPS4-206ENST00000439453 AMOTL2Q9Y2J4 779 aa11.3□□□□□ -0.6
HPS4-206ENST00000439453 ADGRB2O60241 1585 aa11.3□□□□□ -0.6
HPS4-206ENST00000439453 LRPPRCP42704 1394 aaKnown RBP11.3□□□□□ -0.6
HPS4-206ENST00000439453 RCAN3Q9UKA8 241 aa11.29□□□□□ -0.6
HPS4-206ENST00000439453 CFAP70Q5T0N1 1121 aa11.29□□□□□ -0.6
HPS4-206ENST00000439453 DCAF11Q8TEB1 546 aa11.29□□□□□ -0.6
HPS4-206ENST00000439453 USP32Q8NFA0 1604 aa11.29□□□□□ -0.6
HPS4-206ENST00000439453 CDC42BPGQ6DT37 1551 aa11.29□□□□□ -0.6
HPS4-206ENST00000439453 ABCC11Q96J66 1382 aa11.28□□□□□ -0.6
HPS4-206ENST00000439453 PLEKHH1Q9ULM0 1364 aa11.28□□□□□ -0.6
HPS4-206ENST00000439453 DDRGK1Q96HY6 314 aa11.28□□□□□ -0.6
HPS4-206ENST00000439453 ADGRL3Q9HAR2 1447 aa11.27□□□□□ -0.6
HPS4-206ENST00000439453 FBXO41Q8TF61 875 aa11.27□□□□□ -0.6
HPS4-206ENST00000439453 BRPF3Q9ULD4 1205 aa11.27□□□□□ -0.6
HPS4-206ENST00000439453 ROCK2O75116 1388 aaKnown RBP11.27□□□□□ -0.61
HPS4-206ENST00000439453 GSE1Q14687 1217 aa11.27□□□□□ -0.61
HPS4-206ENST00000439453 TMEM132EQ6IEE7 984 aa11.27□□□□□ -0.61
HPS4-206ENST00000439453 NHSL1Q5SYE7 1610 aa11.27□□□□□ -0.61
HPS4-206ENST00000439453 QRICH2Q9H0J4 1663 aa11.27□□□□□ -0.61
HPS4-206ENST00000439453 BRD4O60885 1362 aaPredicted RBP11.27□□□□□ -0.61
HPS4-206ENST00000439453 DCCP43146 1447 aa11.26□□□□□ -0.61
HPS4-206ENST00000439453 FAM135BQ49AJ0 1406 aa11.26□□□□□ -0.61
HPS4-206ENST00000439453 ILDR1Q86SU0 546 aaPredicted RBP11.26□□□□□ -0.61
HPS4-206ENST00000439453 STAC3Q96MF2 364 aa11.26□□□□□ -0.61
HPS4-206ENST00000439453 KDM2AQ9Y2K7 1162 aa11.26□□□□□ -0.61
HPS4-206ENST00000439453 MYBBP1AQ9BQG0 1328 aaKnown RBP11.25□□□□□ -0.61
HPS4-206ENST00000439453 PROSER2Q86WR7 435 aaPredicted RBP11.24□□□□□ -0.61
HPS4-206ENST00000439453 MST1RQ04912 1400 aa11.24□□□□□ -0.61
HPS4-206ENST00000439453 TOPAZ1Q8N9V7 1692 aa11.24□□□□□ -0.61
HPS4-206ENST00000439453 RALGAPBQ86X10 1494 aa11.24□□□□□ -0.61
HPS4-206ENST00000439453 EIF5BO60841 1220 aaKnown RBP11.24□□□□□ -0.61
HPS4-206ENST00000439453 NFKBIBQ15653 356 aa11.24□□□□□ -0.61
HPS4-206ENST00000439453 PDE3BQ13370 1112 aa11.23□□□□□ -0.61
HPS4-206ENST00000439453 RALBP1Q15311 655 aa11.23□□□□□ -0.61
HPS4-206ENST00000439453 COL16A1Q07092 1604 aaPredicted RBP11.23□□□□□ -0.61
HPS4-206ENST00000439453 UBE2Q2Q8WVN8 375 aa11.23□□□□□ -0.61
HPS4-206ENST00000439453 KTN1Q86UP2 1357 aaKnown RBP11.23□□□□□ -0.61
HPS4-206ENST00000439453 NBPF1Q3BBV0 1214 aa11.23□□□□□ -0.61
HPS4-206ENST00000439453 GPRASP1Q5JY77 1395 aa11.23□□□□□ -0.61
HPS4-206ENST00000439453 AHDC1Q5TGY3 1603 aaPredicted RBP11.22□□□□□ -0.61
HPS4-206ENST00000439453 PHLPP1O60346 1717 aa11.22□□□□□ -0.61
HPS4-206ENST00000439453 WAPLQ7Z5K2 1190 aa11.21□□□□□ -0.61
HPS4-206ENST00000439453 FRAT1Q92837 279 aaPredicted RBP11.21□□□□□ -0.61
HPS4-206ENST00000439453 MSH6P52701 1360 aa11.21□□□□□ -0.62
HPS4-206ENST00000439453 SIRT1Q96EB6 747 aa11.21□□□□□ -0.62
HPS4-206ENST00000439453 SKAP1Q86WV1 359 aa11.2□□□□□ -0.62
HPS4-206ENST00000439453 UBAP1LF5GYI3 381 aa11.2□□□□□ -0.62
HPS4-206ENST00000439453 STK26Q9P289 416 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms