RNA–Protein interactions for RNA: ENST00000428331.6

ATP2C1-204, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene ATP2C1, Length 4,795 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-204ENST00000428331 USP19O94966 1318 aa13.52□□□□□ -0.25
ATP2C1-204ENST00000428331 POLR3AO14802 1390 aaPredicted RBP13.52□□□□□ -0.25
ATP2C1-204ENST00000428331 ABCC2Q92887 1545 aa13.51□□□□□ -0.25
ATP2C1-204ENST00000428331 CT47B1P0C2W7 299 aaPredicted RBP13.51□□□□□ -0.25
ATP2C1-204ENST00000428331 SKOR2Q2VWA4 1001 aaPredicted RBP13.51□□□□□ -0.25
ATP2C1-204ENST00000428331 HSP90AA2PQ14568 343 aaPredicted RBP13.5□□□□□ -0.25
ATP2C1-204ENST00000428331 AFAP1Q8N556 730 aa13.5□□□□□ -0.25
ATP2C1-204ENST00000428331 ATP10AO60312 1499 aa13.5□□□□□ -0.25
ATP2C1-204ENST00000428331 XRCC6P12956 609 aaKnown RBP eCLIP13.5□□□□□ -0.25
ATP2C1-204ENST00000428331 SAMD9LQ8IVG5 1584 aa13.49□□□□□ -0.25
ATP2C1-204ENST00000428331 SLC12A5Q9H2X9 1139 aa13.49□□□□□ -0.25
ATP2C1-204ENST00000428331 ZMYM3Q14202 1370 aa13.49□□□□□ -0.25
ATP2C1-204ENST00000428331 CLASP1Q7Z460 1538 aa13.49□□□□□ -0.25
ATP2C1-204ENST00000428331 CARD14Q9BXL6 1004 aa13.49□□□□□ -0.25
ATP2C1-204ENST00000428331 SYNMO15061 1565 aa13.48□□□□□ -0.25
ATP2C1-204ENST00000428331 RLBP1P12271 317 aa13.48□□□□□ -0.25
ATP2C1-204ENST00000428331 RRAGDQ9NQL2 400 aaPredicted RBP13.48□□□□□ -0.25
ATP2C1-204ENST00000428331 ANTXR1Q9H6X2 564 aa13.47□□□□□ -0.25
ATP2C1-204ENST00000428331 NSD3Q9BZ95 1437 aa13.47□□□□□ -0.25
ATP2C1-204ENST00000428331 GRPEL1Q9HAV7 217 aa13.47□□□□□ -0.25
ATP2C1-204ENST00000428331 CCDC27Q2M243 656 aa13.46□□□□□ -0.25
ATP2C1-204ENST00000428331 MAST1Q9Y2H9 1570 aa13.46□□□□□ -0.26
ATP2C1-204ENST00000428331 CLCN1P35523 988 aa13.46□□□□□ -0.26
ATP2C1-204ENST00000428331 EXOSC9Q06265 439 aaKnown RBP13.45□□□□□ -0.26
ATP2C1-204ENST00000428331 CIZ1Q9ULV3 898 aaPredicted RBP13.45□□□□□ -0.26
ATP2C1-204ENST00000428331 KIF16BQ96L93 1317 aa13.45□□□□□ -0.26
ATP2C1-204ENST00000428331 ATF7IPQ6VMQ6 1270 aa13.45□□□□□ -0.26
ATP2C1-204ENST00000428331 TNNQ9UQP3 1299 aa13.45□□□□□ -0.26
ATP2C1-204ENST00000428331 UNC13BO14795 1591 aa13.45□□□□□ -0.26
ATP2C1-204ENST00000428331 EVC2Q86UK5 1308 aa13.45□□□□□ -0.26
ATP2C1-204ENST00000428331 NCLP19338 710 aaKnown RBP13.44□□□□□ -0.26
ATP2C1-204ENST00000428331 CFAP44Q96MT7 982 aa13.44□□□□□ -0.26
ATP2C1-204ENST00000428331 ADGRF5Q8IZF2 1346 aa13.44□□□□□ -0.26
ATP2C1-204ENST00000428331 ESPNB1AK53 854 aa13.44□□□□□ -0.26
ATP2C1-204ENST00000428331 LNPKQ9C0E8 428 aa13.44□□□□□ -0.26
ATP2C1-204ENST00000428331 TSR2Q969E8 191 aaKnown RBP13.44□□□□□ -0.26
ATP2C1-204ENST00000428331 IQGAP3Q86VI3 1631 aa13.44□□□□□ -0.26
ATP2C1-204ENST00000428331 PREX2Q70Z35 1606 aa13.43□□□□□ -0.26
ATP2C1-204ENST00000428331 MSNP26038 577 aaKnown RBP13.43□□□□□ -0.26
ATP2C1-204ENST00000428331 PANK2Q9BZ23 570 aa13.43□□□□□ -0.26
ATP2C1-204ENST00000428331 SRPK2P78362 688 aaKnown RBP13.43□□□□□ -0.26
ATP2C1-204ENST00000428331 HDAC1Q13547 482 aaPredicted RBP13.43□□□□□ -0.26
ATP2C1-204ENST00000428331 ANKRD45Q5TZF3 282 aa13.42□□□□□ -0.26
ATP2C1-204ENST00000428331 PLCH2O75038 1416 aa13.42□□□□□ -0.26
ATP2C1-204ENST00000428331 FOXD4L1Q9NU39 408 aa13.42□□□□□ -0.26
ATP2C1-204ENST00000428331 NOB1Q9ULX3 412 aaKnown RBP13.41□□□□□ -0.26
ATP2C1-204ENST00000428331 TRIM27P14373 513 aa13.4□□□□□ -0.26
ATP2C1-204ENST00000428331 RIPK4P57078 832 aa13.4□□□□□ -0.26
ATP2C1-204ENST00000428331 SAFB2Q14151 953 aaKnown RBP eCLIP13.4□□□□□ -0.26
ATP2C1-204ENST00000428331 DDX49Q9Y6V7 483 aaKnown RBP13.4□□□□□ -0.26
ATP2C1-204ENST00000428331 FSD2A1L4K1 749 aa13.4□□□□□ -0.26
ATP2C1-204ENST00000428331 SSH1Q8WYL5 1049 aa13.4□□□□□ -0.26
ATP2C1-204ENST00000428331 RRP9O43818 475 aaKnown RBP13.4□□□□□ -0.26
ATP2C1-204ENST00000428331 VSIG10Q8N0Z9 540 aa13.4□□□□□ -0.26
ATP2C1-204ENST00000428331 TMEM132EQ6IEE7 984 aa13.39□□□□□ -0.27
ATP2C1-204ENST00000428331 CALD1Q05682 793 aaKnown RBP13.39□□□□□ -0.27
ATP2C1-204ENST00000428331 TERF2IPQ9NYB0 399 aa13.39□□□□□ -0.27
ATP2C1-204ENST00000428331 KDM5AP29375 1690 aaKnown RBP13.39□□□□□ -0.27
ATP2C1-204ENST00000428331 NCBP3Q53F19 620 aaKnown RBP13.39□□□□□ -0.27
ATP2C1-204ENST00000428331 CASC1Q6TDU7 716 aa13.39□□□□□ -0.27
ATP2C1-204ENST00000428331 PLXNC1O60486 1568 aa13.38□□□□□ -0.27
ATP2C1-204ENST00000428331 TRAPPC8Q9Y2L5 1435 aa13.38□□□□□ -0.27
ATP2C1-204ENST00000428331 TMPOP42166 694 aaKnown RBP13.38□□□□□ -0.27
ATP2C1-204ENST00000428331 GGT6Q6P531 493 aa13.38□□□□□ -0.27
ATP2C1-204ENST00000428331 CHD1LQ86WJ1 897 aa13.38□□□□□ -0.27
ATP2C1-204ENST00000428331 TMEM57Q8N5G2 664 aa13.38□□□□□ -0.27
ATP2C1-204ENST00000428331 SMC5Q8IY18 1101 aa13.37□□□□□ -0.27
ATP2C1-204ENST00000428331 TNPO1Q92973 898 aaKnown RBP13.37□□□□□ -0.27
ATP2C1-204ENST00000428331 SNX21Q969T3 373 aa13.37□□□□□ -0.27
ATP2C1-204ENST00000428331 TTC37Q6PGP7 1564 aa13.37□□□□□ -0.27
ATP2C1-204ENST00000428331 CDC42BPBQ9Y5S2 1711 aa13.37□□□□□ -0.27
ATP2C1-204ENST00000428331 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.37□□□□□ -0.274e-8■□□□□ 8.6
ATP2C1-204ENST00000428331 GCC1Q96CN9 775 aa13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 ERVK-7P63135 1459 aa13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 VGFO15240 615 aaPredicted RBP13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 DIAPH1O60610 1272 aaKnown RBP13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 HDGFL2Q7Z4V5 671 aaPredicted RBP13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 MYO5CQ9NQX4 1742 aa13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 NASPP49321 788 aaPredicted RBP13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 K7ELQ4 463 aaPredicted RBP13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 TPM2P07951 284 aa13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 SBNO2Q9Y2G9 1366 aa13.36□□□□□ -0.27
ATP2C1-204ENST00000428331 CCDC173Q0VFZ6 552 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 TRPM2O94759 1503 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 MADDQ8WXG6 1647 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 GGNBP2Q9H3C7 697 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 STK26Q9P289 416 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 ABCC11Q96J66 1382 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 RTEL1-TNFRSF6BF6WH68 1400 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 NSD2O96028 1365 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 PTPRTO14522 1441 aa13.35□□□□□ -0.27
ATP2C1-204ENST00000428331 BMP2KLQ5H9B9 411 aa13.34□□□□□ -0.27
ATP2C1-204ENST00000428331 CABP2Q9NPB3 220 aa13.34□□□□□ -0.27
ATP2C1-204ENST00000428331 RNF17Q9BXT8 1623 aaKnown RBP13.34□□□□□ -0.27
ATP2C1-204ENST00000428331 RBM25P49756 843 aaKnown RBP13.34□□□□□ -0.27
ATP2C1-204ENST00000428331 NUCB2P80303 420 aa13.34□□□□□ -0.27
ATP2C1-204ENST00000428331 ZNF428Q96B54 188 aa13.34□□□□□ -0.27
ATP2C1-204ENST00000428331 PHF23Q9BUL5 403 aaPredicted RBP13.34□□□□□ -0.27
ATP2C1-204ENST00000428331 NUCB1Q02818 461 aa13.33□□□□□ -0.27
ATP2C1-204ENST00000428331 SENP3Q9H4L4 574 aaPredicted RBP13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms