RNA–Protein interactions for RNA: ENST00000428331.6

ATP2C1-204, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene ATP2C1, Length 4,795 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-204ENST00000428331 CSTF2P33240 577 aaKnown RBP eCLIP10.36□□□□□ -0.754e-21■■■■■ 61.4
ATP2C1-204ENST00000428331 FMR1Q06787 632 aaKnown RBP eCLIP12.18□□□□□ -0.462e-20■■■■■ 71.1
ATP2C1-204ENST00000428331 PTBP1P26599 531 aaKnown RBP eCLIP10.22□□□□□ -0.771e-16■■■■■ 67.2
ATP2C1-204ENST00000428331 AGGF1Q8N302 714 aaeCLIP11.52□□□□□ -0.572e-9■□□□□ 10.7
ATP2C1-204ENST00000428331 SF3B4Q15427 424 aaKnown RBP eCLIP10.5□□□□□ -0.738e-9■■■■□ 21.6
ATP2C1-204ENST00000428331 PCBP2Q15366 365 aaKnown RBP eCLIP10.53□□□□□ -0.722e-8■■■■■ 32.5
ATP2C1-204ENST00000428331 DDX3XO00571 662 aaKnown RBP eCLIP11.62□□□□□ -0.552e-8■■■■□ 19.4
ATP2C1-204ENST00000428331 RBFOX2O43251 390 aaKnown RBP eCLIP9□□□□□ -0.972e-8■■■■■ 29.4
ATP2C1-204ENST00000428331 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.77□□□□□ -0.534e-8■■■■□ 22
ATP2C1-204ENST00000428331 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.37□□□□□ -0.274e-8■□□□□ 8.6
ATP2C1-204ENST00000428331 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.86□□□□□ -0.672e-7■■■■■ 62.8
ATP2C1-204ENST00000428331 AQRO60306 1485 aaKnown RBP eCLIP14.55□□□□□ -0.082e-7■■■■■ 32.8
ATP2C1-204ENST00000428331 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.02□□□□□ -0.813e-7■■■□□ 18.5
ATP2C1-204ENST00000428331 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.18□□□□□ -1.15e-7■■■■□ 22.1
ATP2C1-204ENST00000428331 HNRNPMP52272 730 aaKnown RBP eCLIP13.96□□□□□ -0.175e-7■■■■■ 28.1
ATP2C1-204ENST00000428331 SF3B1O75533 1304 aaKnown RBP eCLIP11.03□□□□□ -0.648e-7■■■■■ 85.6
ATP2C1-204ENST00000428331 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.38□□□□□ -0.431e-6■■■■□ 20.6
ATP2C1-204ENST00000428331 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.47□□□□□ -0.411e-6■□□□□ 10.5
ATP2C1-204ENST00000428331 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.24□□□□□ -0.451e-6■■■□□ 15.2
ATP2C1-204ENST00000428331 PPIGQ13427 754 aaKnown RBP eCLIP10.43□□□□□ -0.741e-6■■■□□ 19.2
ATP2C1-204ENST00000428331 AARSP49588 968 aaKnown RBP eCLIP12.01□□□□□ -0.491e-6■■■■■ 36.1
ATP2C1-204ENST00000428331 KHSRPQ92945 711 aaKnown RBP eCLIP10.85□□□□□ -0.672e-6■■■□□ 16.8
ATP2C1-204ENST00000428331 ZRANB2O95218 330 aaKnown RBP eCLIP12.27□□□□□ -0.443e-6■■■■■ 27.8
ATP2C1-204ENST00000428331 HNRNPLP14866 589 aaKnown RBP eCLIP10.89□□□□□ -0.674e-6■■■■□ 19.8
ATP2C1-204ENST00000428331 U2AF2P26368 475 aaKnown RBP eCLIP12.71□□□□□ -0.385e-6■■■□□ 19.2
ATP2C1-204ENST00000428331 SF3A3Q12874 501 aaKnown RBP eCLIP11.72□□□□□ -0.535e-6■■□□□ 14.3
ATP2C1-204ENST00000428331 GPKOWQ92917 476 aaPredicted RBP eCLIP11.93□□□□□ -0.55e-6■■□□□ 13.8
ATP2C1-204ENST00000428331 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.52□□□□□ -0.566e-6■■■■■ 93.2
ATP2C1-204ENST00000428331 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.09□□□□□ -0.797e-6■■■■□ 19.6
Retrieved 29 of 29 RNA–protein pairs in 8.7 ms