RNA–Protein interactions for RNA: ENST00000421462.5

PKP4-204, Transcript of plakophilin 4, humanhuman

TSL 2

Gene PKP4, Length 3,099 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-204ENST00000421462 MRC2Q9UBG0 1479 aa20.89■□□□□ 0.94
PKP4-204ENST00000421462 SAMD9LQ8IVG5 1584 aa20.89■□□□□ 0.93
PKP4-204ENST00000421462 NUP160Q12769 1436 aa20.88■□□□□ 0.93
PKP4-204ENST00000421462 SCAF11Q99590 1463 aaKnown RBP20.88■□□□□ 0.93
PKP4-204ENST00000421462 KIAA1211Q6ZU35 1233 aa20.88■□□□□ 0.93
PKP4-204ENST00000421462 ARHGAP5Q13017 1502 aa20.88■□□□□ 0.93
PKP4-204ENST00000421462 EXOSC9Q06265 439 aaKnown RBP20.87■□□□□ 0.93
PKP4-204ENST00000421462 GBP4Q96PP9 640 aa20.87■□□□□ 0.93
PKP4-204ENST00000421462 RBM42Q9BTD8 480 aaKnown RBP20.87■□□□□ 0.93
PKP4-204ENST00000421462 SYNJ2O15056 1496 aa20.87■□□□□ 0.93
PKP4-204ENST00000421462 U2SURPO15042 1029 aaKnown RBP20.86■□□□□ 0.93
PKP4-204ENST00000421462 ZNF692Q9BU19 519 aaPredicted RBP20.86■□□□□ 0.93
PKP4-204ENST00000421462 TRAK1Q9UPV9 953 aa20.86■□□□□ 0.93
PKP4-204ENST00000421462 IFT140Q96RY7 1462 aa20.85■□□□□ 0.93
PKP4-204ENST00000421462 TRIM27P14373 513 aa20.85■□□□□ 0.93
PKP4-204ENST00000421462 ERCC6Q03468 1493 aa20.85■□□□□ 0.93
PKP4-204ENST00000421462 ZBTB7CA1YPR0 619 aa20.85■□□□□ 0.93
PKP4-204ENST00000421462 LAMC1P11047 1609 aa20.84■□□□□ 0.93
PKP4-204ENST00000421462 CD2BP2O95400 341 aaKnown RBP20.84■□□□□ 0.93
PKP4-204ENST00000421462 SYNMO15061 1565 aa20.84■□□□□ 0.93
PKP4-204ENST00000421462 NGEFQ8N5V2 710 aa20.84■□□□□ 0.93
PKP4-204ENST00000421462 SSFA2P28290 1259 aa20.83■□□□□ 0.92
PKP4-204ENST00000421462 NOB1Q9ULX3 412 aaKnown RBP20.83■□□□□ 0.92
PKP4-204ENST00000421462 ARHGEF5Q12774 1597 aa20.82■□□□□ 0.92
PKP4-204ENST00000421462 SSH1Q8WYL5 1049 aa20.82■□□□□ 0.92
PKP4-204ENST00000421462 ANP32BQ92688 251 aaKnown RBP20.82■□□□□ 0.92
PKP4-204ENST00000421462 ADGRF5Q8IZF2 1346 aa20.82■□□□□ 0.92
PKP4-204ENST00000421462 NASPP49321 788 aaPredicted RBP20.82■□□□□ 0.92
PKP4-204ENST00000421462 WDR63Q8IWG1 891 aa20.82■□□□□ 0.92
PKP4-204ENST00000421462 DDX49Q9Y6V7 483 aaKnown RBP20.82■□□□□ 0.92
PKP4-204ENST00000421462 ABCA8O94911 1581 aa20.82■□□□□ 0.92
PKP4-204ENST00000421462 TMEM57Q8N5G2 664 aa20.81■□□□□ 0.92
PKP4-204ENST00000421462 RTEL1-TNFRSF6BF6WH68 1400 aa20.81■□□□□ 0.92
PKP4-204ENST00000421462 NSD3Q9BZ95 1437 aa20.81■□□□□ 0.92
PKP4-204ENST00000421462 CFAP53Q96M91 514 aa20.81■□□□□ 0.92
PKP4-204ENST00000421462 C1orf115Q9H7X2 142 aa20.8■□□□□ 0.92
PKP4-204ENST00000421462 MSNP26038 577 aaKnown RBP20.8■□□□□ 0.92
PKP4-204ENST00000421462 FAM13BQ9NYF5 915 aa20.8■□□□□ 0.92
PKP4-204ENST00000421462 NPC1L1Q9UHC9 1359 aa20.8■□□□□ 0.92
PKP4-204ENST00000421462 AAMPQ13685 434 aa20.79■□□□□ 0.92
PKP4-204ENST00000421462 ANKRD45Q5TZF3 282 aa20.79■□□□□ 0.92
PKP4-204ENST00000421462 CDC42BPBQ9Y5S2 1711 aa20.79■□□□□ 0.92
PKP4-204ENST00000421462 SAFB2Q14151 953 aaKnown RBP eCLIP20.78■□□□□ 0.92
PKP4-204ENST00000421462 AFAP1Q8N556 730 aa20.78■□□□□ 0.92
PKP4-204ENST00000421462 DDX19BQ9UMR2 479 aa20.78■□□□□ 0.92
PKP4-204ENST00000421462 POLR3AO14802 1390 aaPredicted RBP20.78■□□□□ 0.92
PKP4-204ENST00000421462 TMEM132EQ6IEE7 984 aa20.77■□□□□ 0.92
PKP4-204ENST00000421462 R3HCC1Q9Y3T6 440 aaKnown RBP20.77■□□□□ 0.92
PKP4-204ENST00000421462 ATF7IPQ6VMQ6 1270 aa20.76■□□□□ 0.91
PKP4-204ENST00000421462 RAB3GAP1Q15042 981 aa20.76■□□□□ 0.91
PKP4-204ENST00000421462 GOLGA6L22H0YM25 854 aa20.75■□□□□ 0.91
PKP4-204ENST00000421462 MADDQ8WXG6 1647 aa20.75■□□□□ 0.91
PKP4-204ENST00000421462 RNF17Q9BXT8 1623 aaKnown RBP20.75■□□□□ 0.91
PKP4-204ENST00000421462 MYOM1P52179 1685 aa20.75■□□□□ 0.91
PKP4-204ENST00000421462 NUTM2DQ5VT03 806 aaPredicted RBP20.74■□□□□ 0.91
PKP4-204ENST00000421462 GAS2L2Q8NHY3 880 aa20.74■□□□□ 0.91
PKP4-204ENST00000421462 ERVK-7P63135 1459 aa20.74■□□□□ 0.91
PKP4-204ENST00000421462 TPM2P07951 284 aa20.74■□□□□ 0.91
PKP4-204ENST00000421462 MCTP1Q6DN14 999 aa20.74■□□□□ 0.91
PKP4-204ENST00000421462 UNC13BO14795 1591 aa20.74■□□□□ 0.91
PKP4-204ENST00000421462 SMC5Q8IY18 1101 aa20.74■□□□□ 0.91
PKP4-204ENST00000421462 IQGAP1P46940 1657 aa20.73■□□□□ 0.91
PKP4-204ENST00000421462 SKOR2Q2VWA4 1001 aaPredicted RBP20.73■□□□□ 0.91
PKP4-204ENST00000421462 CAVIN1Q6NZI2 390 aaKnown RBP20.73■□□□□ 0.91
PKP4-204ENST00000421462 HDAC1Q13547 482 aaPredicted RBP20.73■□□□□ 0.91
PKP4-204ENST00000421462 KDM5AP29375 1690 aaKnown RBP20.73■□□□□ 0.91
PKP4-204ENST00000421462 AK9Q5TCS8 1911 aa20.73■□□□□ 0.91
PKP4-204ENST00000421462 KIF3BO15066 747 aa20.72■□□□□ 0.91
PKP4-204ENST00000421462 IQGAP3Q86VI3 1631 aa20.72■□□□□ 0.91
PKP4-204ENST00000421462 CHD1LQ86WJ1 897 aa20.72■□□□□ 0.91
PKP4-204ENST00000421462 CCDC173Q0VFZ6 552 aa20.72■□□□□ 0.91
PKP4-204ENST00000421462 FOXD4L5Q5VV16 416 aaPredicted RBP20.72■□□□□ 0.91
PKP4-204ENST00000421462 ZSCAN30Q86W11 494 aa20.72■□□□□ 0.91
PKP4-204ENST00000421462 FOXD4L4Q8WXT5 416 aaPredicted RBP20.72■□□□□ 0.91
PKP4-204ENST00000421462 ISY1Q9ULR0 285 aaKnown RBP20.72■□□□□ 0.91
PKP4-204ENST00000421462 ELL2O00472 640 aaPredicted RBP20.71■□□□□ 0.91
PKP4-204ENST00000421462 DDIT3P35638 169 aa20.71■□□□□ 0.91
PKP4-204ENST00000421462 RBM25P49756 843 aaKnown RBP20.71■□□□□ 0.91
PKP4-204ENST00000421462 XPCQ01831 940 aaPredicted RBP20.71■□□□□ 0.91
PKP4-204ENST00000421462 K7ELQ4 463 aaPredicted RBP20.71■□□□□ 0.91
PKP4-204ENST00000421462 PDCL3Q9H2J4 239 aa20.71■□□□□ 0.91
PKP4-204ENST00000421462 PLXNC1O60486 1568 aa20.7■□□□□ 0.9
PKP4-204ENST00000421462 MAST1Q9Y2H9 1570 aa20.7■□□□□ 0.9
PKP4-204ENST00000421462 SNX21Q969T3 373 aa20.69■□□□□ 0.9
PKP4-204ENST00000421462 PHF23Q9BUL5 403 aaPredicted RBP20.69■□□□□ 0.9
PKP4-204ENST00000421462 SPAG9O60271 1321 aaKnown RBP20.69■□□□□ 0.9
PKP4-204ENST00000421462 CHAMP1Q96JM3 812 aa20.69■□□□□ 0.9
PKP4-204ENST00000421462 KIF2CQ99661 725 aa20.69■□□□□ 0.9
PKP4-204ENST00000421462 NUCB1Q02818 461 aa20.68■□□□□ 0.9
PKP4-204ENST00000421462 ZBTB40Q9NUA8 1239 aa20.68■□□□□ 0.9
PKP4-204ENST00000421462 TBC1D9Q6ZT07 1266 aa20.68■□□□□ 0.9
PKP4-204ENST00000421462 BAG4O95429 457 aaKnown RBP20.67■□□□□ 0.9
PKP4-204ENST00000421462 CIZ1Q9ULV3 898 aaPredicted RBP20.67■□□□□ 0.9
PKP4-204ENST00000421462 PREX2Q70Z35 1606 aa20.67■□□□□ 0.9
PKP4-204ENST00000421462 ZMYM3Q14202 1370 aa20.67■□□□□ 0.9
PKP4-204ENST00000421462 RIPK4P57078 832 aa20.67■□□□□ 0.9
PKP4-204ENST00000421462 CALD1Q05682 793 aaKnown RBP20.67■□□□□ 0.9
PKP4-204ENST00000421462 TTC37Q6PGP7 1564 aa20.66■□□□□ 0.9
PKP4-204ENST00000421462 EFCAB2Q5VUJ9 269 aa20.66■□□□□ 0.9
PKP4-204ENST00000421462 GGNBP2Q9H3C7 697 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms