RNA–Protein interactions for RNA: ENST00000421462.5

PKP4-204, Transcript of plakophilin 4, humanhuman

TSL 2

Gene PKP4, Length 3,099 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-204ENST00000421462 NISCHQ9Y2I1 1504 aa31.53■■■□□ 2.64
PKP4-204ENST00000421462 SHROOM4Q9ULL8 1493 aa28.49■■■□□ 2.15
PKP4-204ENST00000421462 SUPT5HO00267 1087 aaKnown RBP28.34■■■□□ 2.13
PKP4-204ENST00000421462 HRCP23327 699 aa27.95■■■□□ 2.07
PKP4-204ENST00000421462 PCGF6Q9BYE7 350 aa27.82■■■□□ 2.04
PKP4-204ENST00000421462 PPARGC1BQ86YN6 1023 aaKnown RBP27.75■■■□□ 2.03
PKP4-204ENST00000421462 MYO15BQ96JP2 1530 aa27.52■■■□□ 2
PKP4-204ENST00000421462 CHIC1Q5VXU3 224 aa27.45■■□□□ 1.99
PKP4-204ENST00000421462 DCAF8L2P0C7V8 631 aa27.2■■□□□ 1.95
PKP4-204ENST00000421462 LOC105371045A0A1W2PR82 267 aa27.08■■□□□ 1.93
PKP4-204ENST00000421462 ZCCHC6Q5VYS8 1495 aaKnown RBP26.72■■□□□ 1.87
PKP4-204ENST00000421462 TRIM26Q12899 539 aaPredicted RBP26.67■■□□□ 1.86
PKP4-204ENST00000421462 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
PKP4-204ENST00000421462 EHMT2Q96KQ7 1210 aa26.47■■□□□ 1.83
PKP4-204ENST00000421462 SCAF1Q9H7N4 1312 aaKnown RBP26.45■■□□□ 1.83
PKP4-204ENST00000421462 PELP1Q8IZL8 1130 aaKnown RBP26.45■■□□□ 1.82
PKP4-204ENST00000421462 FAM9AQ8IZU1 332 aaPredicted RBP26.33■■□□□ 1.8
PKP4-204ENST00000421462 ZEB1P37275 1124 aaPredicted RBP26.26■■□□□ 1.79
PKP4-204ENST00000421462 CCDC180Q9P1Z9 1646 aa26.22■■□□□ 1.79
PKP4-204ENST00000421462 TRIM41Q8WV44 630 aa26.03■■□□□ 1.76
PKP4-204ENST00000421462 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.86■■□□□ 1.73
PKP4-204ENST00000421462 NEUROD1Q13562 356 aa25.86■■□□□ 1.73
PKP4-204ENST00000421462 ACIN1Q9UKV3 1341 aaKnown RBP25.8■■□□□ 1.72
PKP4-204ENST00000421462 CCER1Q8TC90 406 aaPredicted RBP25.77■■□□□ 1.72
PKP4-204ENST00000421462 GTF3C3Q9Y5Q9 886 aa25.75■■□□□ 1.71
PKP4-204ENST00000421462 TTBK1Q5TCY1 1321 aaPredicted RBP25.75■■□□□ 1.71
PKP4-204ENST00000421462 DIEXFQ68CQ4 756 aaKnown RBP25.59■■□□□ 1.69
PKP4-204ENST00000421462 CENPBP07199 599 aaPredicted RBP25.55■■□□□ 1.68
PKP4-204ENST00000421462 YTHDC1Q96MU7 727 aaKnown RBP25.48■■□□□ 1.67
PKP4-204ENST00000421462 RSF1Q96T23 1441 aaPredicted RBP25.44■■□□□ 1.66
PKP4-204ENST00000421462 RB1CC1Q8TDY2 1594 aa25.36■■□□□ 1.65
PKP4-204ENST00000421462 ABCC9O60706 1549 aa25.34■■□□□ 1.65
PKP4-204ENST00000421462 SCRIBQ14160 1630 aa25.26■■□□□ 1.63
PKP4-204ENST00000421462 MYT1Q01538 1121 aa25.25■■□□□ 1.63
PKP4-204ENST00000421462 ZNF316A6NFI3 1004 aaPredicted RBP25.04■■□□□ 1.6
PKP4-204ENST00000421462 MIER1Q8N108 512 aa24.98■■□□□ 1.59
PKP4-204ENST00000421462 CECR2Q9BXF3 1484 aa24.91■■□□□ 1.58
PKP4-204ENST00000421462 HNRNPUL2Q1KMD3 747 aaKnown RBP24.89■■□□□ 1.58
PKP4-204ENST00000421462 UBTFP17480 764 aaKnown RBP24.84■■□□□ 1.57
PKP4-204ENST00000421462 MROH2BQ7Z745 1585 aa24.76■■□□□ 1.55
PKP4-204ENST00000421462 CEP162Q5TB80 1403 aa24.72■■□□□ 1.55
PKP4-204ENST00000421462 WIZO95785 1651 aa24.7■■□□□ 1.54
PKP4-204ENST00000421462 RANGAP1P46060 587 aaPredicted RBP24.65■■□□□ 1.54
PKP4-204ENST00000421462 ABCC8Q09428 1581 aa24.62■■□□□ 1.53
PKP4-204ENST00000421462 CCDC88BA6NC98 1476 aa24.6■■□□□ 1.53
PKP4-204ENST00000421462 SOGA1O94964 1423 aa24.57■■□□□ 1.52
PKP4-204ENST00000421462 WRNQ14191 1432 aaPredicted RBP eCLIP24.53■■□□□ 1.52
PKP4-204ENST00000421462 CSRNP3Q8WYN3 585 aa24.5■■□□□ 1.51
PKP4-204ENST00000421462 RUSC2Q8N2Y8 1516 aa24.45■■□□□ 1.5
PKP4-204ENST00000421462 TNIKQ9UKE5 1360 aa24.44■■□□□ 1.5
PKP4-204ENST00000421462 SUPT16HQ9Y5B9 1047 aaKnown RBP24.43■■□□□ 1.5
PKP4-204ENST00000421462 APLP2Q06481 763 aa24.38■■□□□ 1.49
PKP4-204ENST00000421462 BCANQ96GW7 911 aa24.32■■□□□ 1.48
PKP4-204ENST00000421462 BAZ1AQ9NRL2 1556 aaPredicted RBP24.27■■□□□ 1.48
PKP4-204ENST00000421462 TSHZ2Q9NRE2 1034 aa24.26■■□□□ 1.47
PKP4-204ENST00000421462 EIF4G1Q04637 1599 aaKnown RBP24.24■■□□□ 1.47
PKP4-204ENST00000421462 GOLGA3Q08378 1498 aa24.17■■□□□ 1.46
PKP4-204ENST00000421462 ANP32EQ9BTT0 268 aa24.16■■□□□ 1.46
PKP4-204ENST00000421462 KCNH8Q96L42 1107 aa24.15■■□□□ 1.46
PKP4-204ENST00000421462 CLIP1P30622 1438 aa24.12■■□□□ 1.45
PKP4-204ENST00000421462 ITGAEP38570 1179 aa24.09■■□□□ 1.45
PKP4-204ENST00000421462 NACADO15069 1562 aa24.05■■□□□ 1.44
PKP4-204ENST00000421462 BCL11AQ9H165 835 aa24.05■■□□□ 1.44
PKP4-204ENST00000421462 EEA1Q15075 1411 aa24.05■■□□□ 1.44
PKP4-204ENST00000421462 TOP2AP11388 1531 aaKnown RBP24.02■■□□□ 1.44
PKP4-204ENST00000421462 SMARCA2P51531 1590 aa24.01■■□□□ 1.43
PKP4-204ENST00000421462 FKBP8Q14318 412 aa24■■□□□ 1.43
PKP4-204ENST00000421462 CLSPNQ9HAW4 1339 aa24■■□□□ 1.43
PKP4-204ENST00000421462 DHX57Q6P158 1386 aaKnown RBP23.96■■□□□ 1.43
PKP4-204ENST00000421462 VPS8Q8N3P4 1428 aa23.95■■□□□ 1.42
PKP4-204ENST00000421462 CEP164Q9UPV0 1460 aa23.91■■□□□ 1.42
PKP4-204ENST00000421462 KANK4Q5T7N3 995 aaPredicted RBP23.87■■□□□ 1.41
PKP4-204ENST00000421462 DDX10Q13206 875 aaKnown RBP23.85■■□□□ 1.41
PKP4-204ENST00000421462 RAPGEF2Q9Y4G8 1499 aa23.84■■□□□ 1.41
PKP4-204ENST00000421462 SMARCA4P51532 1647 aa23.83■■□□□ 1.4
PKP4-204ENST00000421462 PABPN1Q86U42 306 aaKnown RBP eCLIP23.82■■□□□ 1.4
PKP4-204ENST00000421462 HIRIP3Q9BW71 556 aaPredicted RBP23.81■■□□□ 1.4
PKP4-204ENST00000421462 TRIM52Q96A61 297 aa23.8■■□□□ 1.4
PKP4-204ENST00000421462 NEFLP07196 543 aa23.77■■□□□ 1.4
PKP4-204ENST00000421462 RBM19Q9Y4C8 960 aaKnown RBP23.75■■□□□ 1.39
PKP4-204ENST00000421462 SYNJ1O43426 1573 aa23.71■■□□□ 1.39
PKP4-204ENST00000421462 KIF21BO75037 1637 aa23.71■■□□□ 1.39
PKP4-204ENST00000421462 SIN3AQ96ST3 1273 aa23.64■■□□□ 1.37
PKP4-204ENST00000421462 IRX6P78412 446 aaPredicted RBP23.58■■□□□ 1.37
PKP4-204ENST00000421462 BAZ1BQ9UIG0 1483 aaKnown RBP23.54■■□□□ 1.36
PKP4-204ENST00000421462 CCNB3Q8WWL7 1395 aa23.51■■□□□ 1.35
PKP4-204ENST00000421462 ERICH6Q7L0X2 663 aa23.5■■□□□ 1.35
PKP4-204ENST00000421462 RAB3GAP2Q9H2M9 1393 aa23.5■■□□□ 1.35
PKP4-204ENST00000421462 MSH5O43196 834 aa23.49■■□□□ 1.35
PKP4-204ENST00000421462 FAM50AQ14320 339 aaKnown RBP23.49■■□□□ 1.35
PKP4-204ENST00000421462 ANP32CO43423 234 aa23.48■■□□□ 1.35
PKP4-204ENST00000421462 ATP1B4Q9UN42 357 aaPredicted RBP23.48■■□□□ 1.35
PKP4-204ENST00000421462 ARAP1Q96P48 1450 aa23.46■■□□□ 1.35
PKP4-204ENST00000421462 RRBP1Q9P2E9 1410 aaKnown RBP23.39■■□□□ 1.34
PKP4-204ENST00000421462 WDR97A6NE52 1622 aa23.38■■□□□ 1.33
PKP4-204ENST00000421462 PPP1R15AO75807 674 aaPredicted RBP23.37■■□□□ 1.33
PKP4-204ENST00000421462 HNRNPUQ00839 825 aaKnown RBP eCLIP23.34■■□□□ 1.33
PKP4-204ENST00000421462 CDK11AQ9UQ88 783 aaPredicted RBP23.32■■□□□ 1.32
PKP4-204ENST00000421462 UNC13AQ9UPW8 1703 aa23.31■■□□□ 1.32
PKP4-204ENST00000421462 MAPKBP1O60336 1514 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms