RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 PANK3Q9H999 370 aa7.57□□□□□ -1.2
EPHA4-202ENST00000409854 AKAP12Q02952 1782 aa7.57□□□□□ -1.2
EPHA4-202ENST00000409854 NINLQ9Y2I6 1382 aa7.57□□□□□ -1.2
EPHA4-202ENST00000409854 EVC2Q86UK5 1308 aa7.57□□□□□ -1.2
EPHA4-202ENST00000409854 TXNDC2Q86VQ3 553 aa7.57□□□□□ -1.2
EPHA4-202ENST00000409854 EID1Q9Y6B2 187 aa7.57□□□□□ -1.2
EPHA4-202ENST00000409854 PTCH1Q13635 1447 aa7.56□□□□□ -1.2
EPHA4-202ENST00000409854 PTPRUQ92729 1446 aa7.56□□□□□ -1.2
EPHA4-202ENST00000409854 KIF20BQ96Q89 1820 aa7.56□□□□□ -1.2
EPHA4-202ENST00000409854 RALBP1Q15311 655 aa7.56□□□□□ -1.2
EPHA4-202ENST00000409854 PRAM1Q96QH2 718 aa7.56□□□□□ -1.2
EPHA4-202ENST00000409854 STK26Q9P289 416 aa7.56□□□□□ -1.2
EPHA4-202ENST00000409854 ITSN1Q15811 1721 aa7.56□□□□□ -1.2
EPHA4-202ENST00000409854 MON2Q7Z3U7 1717 aa7.56□□□□□ -1.2
EPHA4-202ENST00000409854 PIK3R4Q99570 1358 aa7.55□□□□□ -1.2
EPHA4-202ENST00000409854 PLEKHH1Q9ULM0 1364 aa7.55□□□□□ -1.2
EPHA4-202ENST00000409854 TBX22Q9Y458 520 aa7.55□□□□□ -1.2
EPHA4-202ENST00000409854 NWD1Q149M9 1564 aa7.55□□□□□ -1.2
EPHA4-202ENST00000409854 ATAD2Q6PL18 1390 aa7.55□□□□□ -1.2
EPHA4-202ENST00000409854 CD163L1Q9NR16 1453 aa7.55□□□□□ -1.2
EPHA4-202ENST00000409854 MYBBP1AQ9BQG0 1328 aaKnown RBP7.54□□□□□ -1.2
EPHA4-202ENST00000409854 AMER1Q5JTC6 1135 aaPredicted RBP7.54□□□□□ -1.2
EPHA4-202ENST00000409854 PLPPR3Q6T4P5 718 aa7.54□□□□□ -1.2
EPHA4-202ENST00000409854 BRD4O60885 1362 aaPredicted RBP7.54□□□□□ -1.2
EPHA4-202ENST00000409854 ANKRD36BQ8N2N9 1353 aa7.54□□□□□ -1.2
EPHA4-202ENST00000409854 ROBO2Q9HCK4 1378 aa7.54□□□□□ -1.2
EPHA4-202ENST00000409854 CCDC184Q52MB2 194 aa7.54□□□□□ -1.2
EPHA4-202ENST00000409854 YTHDC1Q96MU7 727 aaKnown RBP7.54□□□□□ -1.2
EPHA4-202ENST00000409854 SENP3Q9H4L4 574 aaPredicted RBP7.54□□□□□ -1.2
EPHA4-202ENST00000409854 NALCNQ8IZF0 1738 aa7.53□□□□□ -1.2
EPHA4-202ENST00000409854 CENPBP07199 599 aaPredicted RBP7.53□□□□□ -1.2
EPHA4-202ENST00000409854 POGKQ9P215 609 aa7.53□□□□□ -1.2
EPHA4-202ENST00000409854 ATP7BP35670 1465 aa7.53□□□□□ -1.2
EPHA4-202ENST00000409854 FMN2Q9NZ56 1722 aa7.53□□□□□ -1.2
EPHA4-202ENST00000409854 CDC42BPGQ6DT37 1551 aa7.53□□□□□ -1.2
EPHA4-202ENST00000409854 NRKQ7Z2Y5 1582 aa7.53□□□□□ -1.2
EPHA4-202ENST00000409854 MINK1Q8N4C8 1332 aaPredicted RBP7.52□□□□□ -1.21
EPHA4-202ENST00000409854 RGPD8O14715 1765 aaPredicted RBP7.52□□□□□ -1.21
EPHA4-202ENST00000409854 CARD14Q9BXL6 1004 aa7.52□□□□□ -1.21
EPHA4-202ENST00000409854 WAPLQ7Z5K2 1190 aa7.52□□□□□ -1.21
EPHA4-202ENST00000409854 KNSTRNQ9Y448 316 aa7.52□□□□□ -1.21
EPHA4-202ENST00000409854 NSD3Q9BZ95 1437 aa7.52□□□□□ -1.21
EPHA4-202ENST00000409854 NPHP4O75161 1426 aaPredicted RBP7.51□□□□□ -1.21
EPHA4-202ENST00000409854 SAFB2Q14151 953 aaKnown RBP eCLIP7.51□□□□□ -1.21
EPHA4-202ENST00000409854 CABP2Q9NPB3 220 aa7.51□□□□□ -1.21
EPHA4-202ENST00000409854 ANKLE2Q86XL3 938 aa7.51□□□□□ -1.21
EPHA4-202ENST00000409854 MRS2Q9HD23 443 aa7.51□□□□□ -1.21
EPHA4-202ENST00000409854 SLC26A8Q96RN1 970 aa7.51□□□□□ -1.21
EPHA4-202ENST00000409854 SLC12A5Q9H2X9 1139 aa7.51□□□□□ -1.21
EPHA4-202ENST00000409854 A0A1W2PP64 1363 aa7.51□□□□□ -1.21
EPHA4-202ENST00000409854 NSD2O96028 1365 aa7.51□□□□□ -1.21
EPHA4-202ENST00000409854 NLRP13Q86W25 1043 aa7.5□□□□□ -1.21
EPHA4-202ENST00000409854 BCANQ96GW7 911 aa7.5□□□□□ -1.21
EPHA4-202ENST00000409854 CDK19Q9BWU1 502 aa7.5□□□□□ -1.21
EPHA4-202ENST00000409854 SHPRHQ149N8 1683 aa7.5□□□□□ -1.21
EPHA4-202ENST00000409854 WASLO00401 505 aaPredicted RBP7.5□□□□□ -1.21
EPHA4-202ENST00000409854 SRPK2P78362 688 aaKnown RBP7.5□□□□□ -1.21
EPHA4-202ENST00000409854 CC2D1BQ5T0F9 858 aaKnown RBP7.5□□□□□ -1.21
EPHA4-202ENST00000409854 STRCQ7RTU9 1775 aa7.5□□□□□ -1.21
EPHA4-202ENST00000409854 INSRP06213 1382 aa7.5□□□□□ -1.21
EPHA4-202ENST00000409854 CPSF1Q10570 1443 aaKnown RBP7.49□□□□□ -1.21
EPHA4-202ENST00000409854 STRCP1A6NGW2 1772 aa7.49□□□□□ -1.21
EPHA4-202ENST00000409854 AMOTL2Q9Y2J4 779 aa7.49□□□□□ -1.21
EPHA4-202ENST00000409854 PNISRQ8TF01 805 aaKnown RBP7.48□□□□□ -1.21
EPHA4-202ENST00000409854 USP54Q70EL1 1684 aa7.48□□□□□ -1.21
EPHA4-202ENST00000409854 LMTK3Q96Q04 1460 aa7.48□□□□□ -1.21
EPHA4-202ENST00000409854 PPIP5K1Q6PFW1 1433 aa7.48□□□□□ -1.21
EPHA4-202ENST00000409854 TMC1Q8TDI8 760 aa7.48□□□□□ -1.21
EPHA4-202ENST00000409854 KDM4FA0A1W2PPD8 638 aa7.48□□□□□ -1.21
EPHA4-202ENST00000409854 PPP2R1AP30153 589 aa7.47□□□□□ -1.21
EPHA4-202ENST00000409854 NKTRP30414 1462 aaKnown RBP7.47□□□□□ -1.21
EPHA4-202ENST00000409854 TERF2IPQ9NYB0 399 aa7.47□□□□□ -1.21
EPHA4-202ENST00000409854 ANKARQ7Z5J8 1434 aa7.47□□□□□ -1.21
EPHA4-202ENST00000409854 CGNL1Q0VF96 1302 aa7.47□□□□□ -1.21
EPHA4-202ENST00000409854 PRR36Q9H6K5 1346 aa7.47□□□□□ -1.21
EPHA4-202ENST00000409854 BLMP54132 1417 aaPredicted RBP7.47□□□□□ -1.21
EPHA4-202ENST00000409854 EDC4Q6P2E9 1401 aaKnown RBP7.47□□□□□ -1.21
EPHA4-202ENST00000409854 CNGB1Q14028 1251 aaPredicted RBP7.46□□□□□ -1.22
EPHA4-202ENST00000409854 MAP2P11137 1827 aaKnown RBP7.46□□□□□ -1.22
EPHA4-202ENST00000409854 XIRP1Q702N8 1843 aaKnown RBP7.46□□□□□ -1.22
EPHA4-202ENST00000409854 KCNA6P17658 529 aa7.46□□□□□ -1.22
EPHA4-202ENST00000409854 NUDT16Q96DE0 195 aaKnown RBP7.46□□□□□ -1.22
EPHA4-202ENST00000409854 CABP1Q9NZU7 370 aa7.46□□□□□ -1.22
EPHA4-202ENST00000409854 MARF1Q9Y4F3 1742 aaKnown RBP7.46□□□□□ -1.22
EPHA4-202ENST00000409854 ADGRL3Q9HAR2 1447 aa7.45□□□□□ -1.22
EPHA4-202ENST00000409854 FAM9BQ8IZU0 186 aa7.45□□□□□ -1.22
EPHA4-202ENST00000409854 HDGFL2Q7Z4V5 671 aaPredicted RBP7.45□□□□□ -1.22
EPHA4-202ENST00000409854 CCDC61Q9Y6R9 512 aa7.45□□□□□ -1.22
EPHA4-202ENST00000409854 POLR3AO14802 1390 aaPredicted RBP7.45□□□□□ -1.22
EPHA4-202ENST00000409854 NCKAP5LQ9HCH0 1330 aa7.45□□□□□ -1.22
EPHA4-202ENST00000409854 BCL11AQ9H165 835 aa7.44□□□□□ -1.22
EPHA4-202ENST00000409854 ZBED9Q6R2W3 1325 aa7.44□□□□□ -1.22
EPHA4-202ENST00000409854 PLEKHG3A1L390 1219 aa7.44□□□□□ -1.22
EPHA4-202ENST00000409854 SSH2Q76I76 1423 aa7.44□□□□□ -1.22
EPHA4-202ENST00000409854 HNRNPUQ00839 825 aaKnown RBP eCLIP7.43□□□□□ -1.22
EPHA4-202ENST00000409854 LRRC7Q96NW7 1537 aa7.43□□□□□ -1.22
EPHA4-202ENST00000409854 PIK3C2AO00443 1686 aa7.43□□□□□ -1.22
EPHA4-202ENST00000409854 COL3A1P02461 1466 aaPredicted RBP7.43□□□□□ -1.22
EPHA4-202ENST00000409854 KIF1AQ12756 1690 aa7.43□□□□□ -1.22
EPHA4-202ENST00000409854 FYB1O15117 783 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms