RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 NISCHQ9Y2I1 1504 aa12.72□□□□□ -0.37
EPHA4-202ENST00000409854 CCDC180Q9P1Z9 1646 aa11.19□□□□□ -0.62
EPHA4-202ENST00000409854 ZCCHC6Q5VYS8 1495 aaKnown RBP10.7□□□□□ -0.7
EPHA4-202ENST00000409854 DCAF1Q9Y4B6 1507 aa10.57□□□□□ -0.72
EPHA4-202ENST00000409854 MYO15BQ96JP2 1530 aa10.46□□□□□ -0.73
EPHA4-202ENST00000409854 ABCC9O60706 1549 aa10.44□□□□□ -0.74
EPHA4-202ENST00000409854 NACADO15069 1562 aa10.37□□□□□ -0.75
EPHA4-202ENST00000409854 DCAF8L2P0C7V8 631 aa10.3□□□□□ -0.76
EPHA4-202ENST00000409854 RB1CC1Q8TDY2 1594 aa10.27□□□□□ -0.77
EPHA4-202ENST00000409854 SHROOM4Q9ULL8 1493 aa10.23□□□□□ -0.77
EPHA4-202ENST00000409854 SCRIBQ14160 1630 aa10.19□□□□□ -0.78
EPHA4-202ENST00000409854 UNC13AQ9UPW8 1703 aa10.15□□□□□ -0.78
EPHA4-202ENST00000409854 BICRAQ9NZM4 1560 aa9.98□□□□□ -0.81
EPHA4-202ENST00000409854 CECR2Q9BXF3 1484 aa9.84□□□□□ -0.83
EPHA4-202ENST00000409854 BAZ1AQ9NRL2 1556 aaPredicted RBP9.83□□□□□ -0.84
EPHA4-202ENST00000409854 RSF1Q96T23 1441 aaPredicted RBP9.83□□□□□ -0.84
EPHA4-202ENST00000409854 SMARCA4P51532 1647 aa9.81□□□□□ -0.84
EPHA4-202ENST00000409854 MROH2BQ7Z745 1585 aa9.81□□□□□ -0.84
EPHA4-202ENST00000409854 SUPT5HO00267 1087 aaKnown RBP9.8□□□□□ -0.84
EPHA4-202ENST00000409854 PABPN1Q86U42 306 aaKnown RBP eCLIP9.77□□□□□ -0.84
EPHA4-202ENST00000409854 WIZO95785 1651 aa9.76□□□□□ -0.85
EPHA4-202ENST00000409854 PEG3Q9GZU2 1588 aa9.72□□□□□ -0.85
EPHA4-202ENST00000409854 TOP2AP11388 1531 aaKnown RBP9.67□□□□□ -0.86
EPHA4-202ENST00000409854 EIF4G1Q04637 1599 aaKnown RBP9.66□□□□□ -0.86
EPHA4-202ENST00000409854 SMARCA2P51531 1590 aa9.63□□□□□ -0.87
EPHA4-202ENST00000409854 ATAD2BQ9ULI0 1458 aa9.6□□□□□ -0.87
EPHA4-202ENST00000409854 HMGXB3Q12766 1538 aa9.57□□□□□ -0.88
EPHA4-202ENST00000409854 BAZ1BQ9UIG0 1483 aaKnown RBP9.54□□□□□ -0.88
EPHA4-202ENST00000409854 NCAPD3P42695 1498 aa9.54□□□□□ -0.88
EPHA4-202ENST00000409854 CCDC88BA6NC98 1476 aa9.51□□□□□ -0.89
EPHA4-202ENST00000409854 CC2D2AQ9P2K1 1620 aa9.51□□□□□ -0.89
EPHA4-202ENST00000409854 CHIC1Q5VXU3 224 aa9.44□□□□□ -0.9
EPHA4-202ENST00000409854 PRDM2Q13029 1718 aa9.41□□□□□ -0.9
EPHA4-202ENST00000409854 CFTRP13569 1480 aa9.32□□□□□ -0.92
EPHA4-202ENST00000409854 ABCC8Q09428 1581 aa9.31□□□□□ -0.92
EPHA4-202ENST00000409854 BIVM-ERCC5R4GMW8 1640 aa9.26□□□□□ -0.93
EPHA4-202ENST00000409854 SYNJ1O43426 1573 aa9.26□□□□□ -0.93
EPHA4-202ENST00000409854 CADPSQ9ULU8 1353 aa9.25□□□□□ -0.93
EPHA4-202ENST00000409854 LAMC3Q9Y6N6 1575 aa9.25□□□□□ -0.93
EPHA4-202ENST00000409854 TRIM41Q8WV44 630 aa9.25□□□□□ -0.93
EPHA4-202ENST00000409854 WRNQ14191 1432 aaPredicted RBP eCLIP9.24□□□□□ -0.93
EPHA4-202ENST00000409854 TOP2BQ02880 1626 aa9.24□□□□□ -0.93
EPHA4-202ENST00000409854 CUX1P39880 1505 aa9.18□□□□□ -0.94
EPHA4-202ENST00000409854 NESP48681 1621 aa9.18□□□□□ -0.94
EPHA4-202ENST00000409854 DNAJC5BQ9UF47 199 aa9.18□□□□□ -0.94
EPHA4-202ENST00000409854 FANCD2Q9BXW9 1451 aa9.16□□□□□ -0.94
EPHA4-202ENST00000409854 KIF21AQ7Z4S6 1674 aa9.16□□□□□ -0.94
EPHA4-202ENST00000409854 DNMBPQ6XZF7 1577 aa9.13□□□□□ -0.95
EPHA4-202ENST00000409854 EEA1Q15075 1411 aa9.13□□□□□ -0.95
EPHA4-202ENST00000409854 CEP164Q9UPV0 1460 aa9.12□□□□□ -0.95
EPHA4-202ENST00000409854 PDS5BQ9NTI5 1447 aa9.11□□□□□ -0.95
EPHA4-202ENST00000409854 SOGA1O94964 1423 aa9.1□□□□□ -0.95
EPHA4-202ENST00000409854 TOPBP1Q92547 1522 aa9.08□□□□□ -0.96
EPHA4-202ENST00000409854 RUSC2Q8N2Y8 1516 aa9.08□□□□□ -0.96
EPHA4-202ENST00000409854 WDR97A6NE52 1622 aa9.07□□□□□ -0.96
EPHA4-202ENST00000409854 URB2Q14146 1524 aaKnown RBP9.07□□□□□ -0.96
EPHA4-202ENST00000409854 FGD5Q6ZNL6 1462 aa9.07□□□□□ -0.96
EPHA4-202ENST00000409854 KIF21BO75037 1637 aa9.06□□□□□ -0.96
EPHA4-202ENST00000409854 FAM9AQ8IZU1 332 aaPredicted RBP9.03□□□□□ -0.96
EPHA4-202ENST00000409854 POLA1P09884 1462 aaPredicted RBP9.03□□□□□ -0.96
EPHA4-202ENST00000409854 LOC105371045A0A1W2PR82 267 aa9.03□□□□□ -0.96
EPHA4-202ENST00000409854 MRC2Q9UBG0 1479 aa9.02□□□□□ -0.97
EPHA4-202ENST00000409854 WDR62O43379 1518 aa9.01□□□□□ -0.97
EPHA4-202ENST00000409854 ABCA10Q8WWZ4 1543 aa9.01□□□□□ -0.97
EPHA4-202ENST00000409854 THOC2Q8NI27 1593 aaKnown RBP9.01□□□□□ -0.97
EPHA4-202ENST00000409854 KIF27Q86VH2 1401 aa9□□□□□ -0.97
EPHA4-202ENST00000409854 CSRNP3Q8WYN3 585 aa9□□□□□ -0.97
EPHA4-202ENST00000409854 TARBP1Q13395 1621 aaKnown RBP9□□□□□ -0.97
EPHA4-202ENST00000409854 ERICH3Q5RHP9 1530 aa8.99□□□□□ -0.97
EPHA4-202ENST00000409854 GOLGA3Q08378 1498 aa8.99□□□□□ -0.97
EPHA4-202ENST00000409854 ABCA5Q8WWZ7 1642 aa8.98□□□□□ -0.97
EPHA4-202ENST00000409854 CUX2O14529 1486 aa8.98□□□□□ -0.97
EPHA4-202ENST00000409854 PRXQ9BXM0 1461 aa8.97□□□□□ -0.97
EPHA4-202ENST00000409854 RAD54L2Q9Y4B4 1467 aa8.97□□□□□ -0.97
EPHA4-202ENST00000409854 CUL7Q14999 1698 aa8.95□□□□□ -0.98
EPHA4-202ENST00000409854 TNIKQ9UKE5 1360 aa8.94□□□□□ -0.98
EPHA4-202ENST00000409854 ERCC6Q03468 1493 aa8.94□□□□□ -0.98
EPHA4-202ENST00000409854 PBRM1Q86U86 1689 aa8.94□□□□□ -0.98
EPHA4-202ENST00000409854 RAPGEF2Q9Y4G8 1499 aa8.93□□□□□ -0.98
EPHA4-202ENST00000409854 IGF1RP08069 1367 aa8.91□□□□□ -0.98
EPHA4-202ENST00000409854 AEBP2Q6ZN18 517 aaPredicted RBP8.91□□□□□ -0.98
EPHA4-202ENST00000409854 IFT140Q96RY7 1462 aa8.91□□□□□ -0.98
EPHA4-202ENST00000409854 GAPVD1Q14C86 1478 aa8.89□□□□□ -0.99
EPHA4-202ENST00000409854 CEP162Q5TB80 1403 aa8.89□□□□□ -0.99
EPHA4-202ENST00000409854 CTTNBP2Q8WZ74 1663 aa8.87□□□□□ -0.99
EPHA4-202ENST00000409854 EIF4G3O43432 1585 aaKnown RBP8.87□□□□□ -0.99
EPHA4-202ENST00000409854 EHMT2Q96KQ7 1210 aa8.86□□□□□ -0.99
EPHA4-202ENST00000409854 CARMIL1Q5VZK9 1371 aa8.86□□□□□ -0.99
EPHA4-202ENST00000409854 ADAMTS12P58397 1594 aa8.85□□□□□ -0.99
EPHA4-202ENST00000409854 TDRD9Q8NDG6 1382 aaKnown RBP8.85□□□□□ -0.99
EPHA4-202ENST00000409854 UBTFP17480 764 aaKnown RBP8.84□□□□□ -1
EPHA4-202ENST00000409854 ZNF608Q9ULD9 1512 aaPredicted RBP8.83□□□□□ -1
EPHA4-202ENST00000409854 GRIN2BQ13224 1484 aa8.83□□□□□ -1
EPHA4-202ENST00000409854 AQRO60306 1485 aaKnown RBP eCLIP8.81□□□□□ -1
EPHA4-202ENST00000409854 CLIP1P30622 1438 aa8.81□□□□□ -1
EPHA4-202ENST00000409854 FHAD1B1AJZ9 1412 aa8.79□□□□□ -1
EPHA4-202ENST00000409854 MAGI1Q96QZ7 1491 aaPredicted RBP8.78□□□□□ -1
EPHA4-202ENST00000409854 ARAP1Q96P48 1450 aa8.77□□□□□ -1.01
EPHA4-202ENST00000409854 SNAPC4Q5SXM2 1469 aa8.77□□□□□ -1.01
EPHA4-202ENST00000409854 ARHGAP35Q9NRY4 1499 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 228.8 ms