RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CHAF1AQ13111 956 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-202ENST00000381753 PLB1Q6P1J6 1458 aa11.44□□□□□ -0.58
LIMCH1-202ENST00000381753 DIAPH1O60610 1272 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-202ENST00000381753 TSPYL4Q9UJ04 414 aa11.44□□□□□ -0.58
LIMCH1-202ENST00000381753 ROCK1Q13464 1354 aa11.44□□□□□ -0.58
LIMCH1-202ENST00000381753 GOLGA6L22H0YM25 854 aa11.44□□□□□ -0.58
LIMCH1-202ENST00000381753 CA8P35219 290 aa11.44□□□□□ -0.58
LIMCH1-202ENST00000381753 PHF8Q9UPP1 1060 aa11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 NOL8Q76FK4 1167 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 MPHOSPH8Q99549 860 aa11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 CDK19Q9BWU1 502 aa11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 ACSBG1Q96GR2 724 aa11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 PLEKHH2Q8IVE3 1493 aa11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 MYO1BO43795 1136 aa11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 ZNF530Q6P9A1 599 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 CEP89Q96ST8 783 aa11.43□□□□□ -0.58
LIMCH1-202ENST00000381753 DDB1Q16531 1140 aa11.42□□□□□ -0.58
LIMCH1-202ENST00000381753 ANKIB1Q9P2G1 1089 aa11.42□□□□□ -0.58
LIMCH1-202ENST00000381753 CCDC34Q96HJ3 373 aa11.42□□□□□ -0.58
LIMCH1-202ENST00000381753 NEUROD6Q96NK8 337 aa11.42□□□□□ -0.58
LIMCH1-202ENST00000381753 NPHP3Q7Z494 1330 aa11.41□□□□□ -0.58
LIMCH1-202ENST00000381753 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-202ENST00000381753 ERICH2A1L162 156 aa11.41□□□□□ -0.58
LIMCH1-202ENST00000381753 ECM2O94769 699 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-202ENST00000381753 EAPPQ56P03 285 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-202ENST00000381753 G3BP1Q13283 466 aaKnown RBP eCLIP11.4□□□□□ -0.58
LIMCH1-202ENST00000381753 GTF3C3Q9Y5Q9 886 aa11.4□□□□□ -0.58
LIMCH1-202ENST00000381753 TNRQ92752 1358 aa11.4□□□□□ -0.58
LIMCH1-202ENST00000381753 C6orf229H3BNL8 230 aa11.4□□□□□ -0.59
LIMCH1-202ENST00000381753 QTRT2Q9H974 415 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-202ENST00000381753 RTEL1-TNFRSF6BF6WH68 1400 aa11.39□□□□□ -0.59
LIMCH1-202ENST00000381753 GOLGA6L6A8MZA4 724 aa11.39□□□□□ -0.59
LIMCH1-202ENST00000381753 PTCD1O75127 700 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-202ENST00000381753 GAS2L2Q8NHY3 880 aa11.39□□□□□ -0.59
LIMCH1-202ENST00000381753 LAMC3Q9Y6N6 1575 aa11.39□□□□□ -0.59
LIMCH1-202ENST00000381753 FKBP5Q13451 457 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 L1TD1Q5T7N2 865 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 GJA3Q9Y6H8 435 aa11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 SLC3A2P08195 630 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 PLCD3Q8N3E9 789 aa11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 ADGRL1O94910 1474 aa11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 HMOX1P09601 288 aa11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 BECN1Q14457 450 aa11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 EPRSP07814 1512 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-202ENST00000381753 IGHMBP2P38935 993 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-202ENST00000381753 DPY19L2Q6NUT2 758 aa11.37□□□□□ -0.59
LIMCH1-202ENST00000381753 TBC1D2BQ9UPU7 963 aa11.37□□□□□ -0.59
LIMCH1-202ENST00000381753 FANCAO15360 1455 aa11.37□□□□□ -0.59
LIMCH1-202ENST00000381753 TOPBP1Q92547 1522 aa11.37□□□□□ -0.59
LIMCH1-202ENST00000381753 FBXO31Q5XUX0 539 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-202ENST00000381753 CCDC146Q8IYE0 955 aa11.37□□□□□ -0.59
LIMCH1-202ENST00000381753 GGNBP2Q9H3C7 697 aa11.37□□□□□ -0.59
LIMCH1-202ENST00000381753 KANK4Q5T7N3 995 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-202ENST00000381753 MYOM3Q5VTT5 1437 aa11.36□□□□□ -0.59
LIMCH1-202ENST00000381753 TRDNQ13061 729 aa11.36□□□□□ -0.59
LIMCH1-202ENST00000381753 CHRNA2Q15822 529 aa11.36□□□□□ -0.59
LIMCH1-202ENST00000381753 ZNF644Q9H582 1327 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-202ENST00000381753 A0A087WZG4 1122 aa11.36□□□□□ -0.59
LIMCH1-202ENST00000381753 CREBRFQ8IUR6 639 aa11.36□□□□□ -0.59
LIMCH1-202ENST00000381753 HDAC9Q9UKV0 1011 aa11.36□□□□□ -0.59
LIMCH1-202ENST00000381753 RBM26Q5T8P6 1007 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-202ENST00000381753 IFIT2P09913 472 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-202ENST00000381753 CRACR2BQ8N4Y2 399 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-202ENST00000381753 ARHGAP27Q6ZUM4 889 aa11.35□□□□□ -0.59
LIMCH1-202ENST00000381753 SCLT1Q96NL6 688 aa11.35□□□□□ -0.59
LIMCH1-202ENST00000381753 WASHC4Q2M389 1173 aa11.34□□□□□ -0.59
LIMCH1-202ENST00000381753 NFXL1Q6ZNB6 911 aa11.34□□□□□ -0.59
LIMCH1-202ENST00000381753 SPRYD3Q8NCJ5 442 aa11.34□□□□□ -0.59
LIMCH1-202ENST00000381753 TRIM44Q96DX7 344 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-202ENST00000381753 MYL6BP14649 208 aa11.34□□□□□ -0.59
LIMCH1-202ENST00000381753 SMARCC1Q92922 1105 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-202ENST00000381753 PLCB2Q00722 1185 aa11.33□□□□□ -0.6
LIMCH1-202ENST00000381753 RGS3P49796 1198 aa11.33□□□□□ -0.6
LIMCH1-202ENST00000381753 TRPC5Q9UL62 973 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-202ENST00000381753 BCS1LQ9Y276 419 aa11.33□□□□□ -0.6
LIMCH1-202ENST00000381753 FYCO1Q9BQS8 1478 aa11.33□□□□□ -0.6
LIMCH1-202ENST00000381753 IGF1RP08069 1367 aa11.33□□□□□ -0.6
LIMCH1-202ENST00000381753 OGFOD1Q8N543 542 aa11.32□□□□□ -0.6
LIMCH1-202ENST00000381753 FAM98CQ17RN3 349 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-202ENST00000381753 RRBP1Q9P2E9 1410 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-202ENST00000381753 MAGI1Q96QZ7 1491 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-202ENST00000381753 NRDCO43847 1150 aa11.32□□□□□ -0.6
LIMCH1-202ENST00000381753 EIF6P56537 245 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-202ENST00000381753 C19orf44Q9H6X5 657 aa11.32□□□□□ -0.6
LIMCH1-202ENST00000381753 CAPN15O75808 1086 aa11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 HSPA5P11021 654 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 KIF22Q14807 665 aa11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 CPLX2Q6PUV4 134 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 TCIRG1Q13488 830 aa11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 STAC3Q96MF2 364 aa11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 ARHGEF6Q15052 776 aa11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 RAB3GAP2Q9H2M9 1393 aa11.31□□□□□ -0.6
LIMCH1-202ENST00000381753 CABP1Q9NZU7 370 aa11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 ATP6V1AP38606 617 aa11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 NBPF6Q5VWK0 638 aa11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 DDX46Q7L014 1031 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 NBPF5PQ86XG9 351 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 CERKQ8TCT0 537 aa11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 NOC3LQ8WTT2 800 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms