RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 POGKQ9P215 609 aa18.75■□□□□ 0.59
PTPRF-202ENST00000372405 TXNDC2Q86VQ3 553 aa18.74■□□□□ 0.59
PTPRF-202ENST00000372405 CABP2Q9NPB3 220 aa18.74■□□□□ 0.59
PTPRF-202ENST00000372405 MED14O60244 1454 aa18.74■□□□□ 0.59
PTPRF-202ENST00000372405 NPC1L1Q9UHC9 1359 aa18.74■□□□□ 0.59
PTPRF-202ENST00000372405 HNRNPUQ00839 825 aaKnown RBP eCLIP18.73■□□□□ 0.59
PTPRF-202ENST00000372405 WAPLQ7Z5K2 1190 aa18.73■□□□□ 0.59
PTPRF-202ENST00000372405 PNISRQ8TF01 805 aaKnown RBP18.73■□□□□ 0.59
PTPRF-202ENST00000372405 TECPR2O15040 1411 aa18.73■□□□□ 0.59
PTPRF-202ENST00000372405 NLRP13Q86W25 1043 aa18.73■□□□□ 0.59
PTPRF-202ENST00000372405 CPS1P31327 1500 aa18.72■□□□□ 0.59
PTPRF-202ENST00000372405 TMC1Q8TDI8 760 aa18.72■□□□□ 0.59
PTPRF-202ENST00000372405 ZNF142P52746 1687 aaPredicted RBP18.71■□□□□ 0.59
PTPRF-202ENST00000372405 THEMISQ8N1K5 641 aaPredicted RBP18.71■□□□□ 0.59
PTPRF-202ENST00000372405 GTF3C3Q9Y5Q9 886 aa18.71■□□□□ 0.59
PTPRF-202ENST00000372405 BCANQ96GW7 911 aa18.7■□□□□ 0.58
PTPRF-202ENST00000372405 EID1Q9Y6B2 187 aa18.7■□□□□ 0.58
PTPRF-202ENST00000372405 FAM135BQ49AJ0 1406 aa18.69■□□□□ 0.58
PTPRF-202ENST00000372405 NSD3Q9BZ95 1437 aa18.69■□□□□ 0.58
PTPRF-202ENST00000372405 USP32Q8NFA0 1604 aa18.68■□□□□ 0.58
PTPRF-202ENST00000372405 SETD1BQ9UPS6 1966 aaKnown RBP18.68■□□□□ 0.58
PTPRF-202ENST00000372405 SRPK2P78362 688 aaKnown RBP18.68■□□□□ 0.58
PTPRF-202ENST00000372405 SLC26A8Q96RN1 970 aa18.67■□□□□ 0.58
PTPRF-202ENST00000372405 PTPRUQ92729 1446 aa18.67■□□□□ 0.58
PTPRF-202ENST00000372405 ANKRD36BQ8N2N9 1353 aa18.66■□□□□ 0.58
PTPRF-202ENST00000372405 SIRT1Q96EB6 747 aa18.66■□□□□ 0.58
PTPRF-202ENST00000372405 CDK19Q9BWU1 502 aa18.66■□□□□ 0.58
PTPRF-202ENST00000372405 ATAD2Q6PL18 1390 aa18.66■□□□□ 0.58
PTPRF-202ENST00000372405 ROBO2Q9HCK4 1378 aa18.66■□□□□ 0.58
PTPRF-202ENST00000372405 PPP2R1AP30153 589 aa18.66■□□□□ 0.58
PTPRF-202ENST00000372405 CD163L1Q9NR16 1453 aa18.65■□□□□ 0.58
PTPRF-202ENST00000372405 NINLQ9Y2I6 1382 aa18.65■□□□□ 0.58
PTPRF-202ENST00000372405 DIP2AQ14689 1571 aa18.64■□□□□ 0.57
PTPRF-202ENST00000372405 A0A1W2PP64 1363 aa18.64■□□□□ 0.57
PTPRF-202ENST00000372405 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.63■□□□□ 0.57
PTPRF-202ENST00000372405 TBX22Q9Y458 520 aa18.62■□□□□ 0.57
PTPRF-202ENST00000372405 ZBED9Q6R2W3 1325 aa18.61■□□□□ 0.57
PTPRF-202ENST00000372405 WASLO00401 505 aaPredicted RBP18.59■□□□□ 0.57
PTPRF-202ENST00000372405 XRN1Q8IZH2 1706 aaKnown RBP18.59■□□□□ 0.57
PTPRF-202ENST00000372405 ADGRB2O60241 1585 aa18.59■□□□□ 0.57
PTPRF-202ENST00000372405 CABP1Q9NZU7 370 aa18.57■□□□□ 0.56
PTPRF-202ENST00000372405 CGNL1Q0VF96 1302 aa18.57■□□□□ 0.56
PTPRF-202ENST00000372405 AMOTL2Q9Y2J4 779 aa18.57■□□□□ 0.56
PTPRF-202ENST00000372405 PTCH1Q13635 1447 aa18.56■□□□□ 0.56
PTPRF-202ENST00000372405 TERF2IPQ9NYB0 399 aa18.55■□□□□ 0.56
PTPRF-202ENST00000372405 ATP7BP35670 1465 aa18.54■□□□□ 0.56
PTPRF-202ENST00000372405 SENP3-EIF4A1A0A087X0R7 540 aa18.54■□□□□ 0.56
PTPRF-202ENST00000372405 ANKRD26Q9UPS8 1709 aa18.54■□□□□ 0.56
PTPRF-202ENST00000372405 BLMP54132 1417 aaPredicted RBP18.54■□□□□ 0.56
PTPRF-202ENST00000372405 ANKLE2Q86XL3 938 aa18.53■□□□□ 0.56
PTPRF-202ENST00000372405 NSD2O96028 1365 aa18.53■□□□□ 0.56
PTPRF-202ENST00000372405 MORC1Q86VD1 984 aa18.53■□□□□ 0.56
PTPRF-202ENST00000372405 PRR36Q9H6K5 1346 aa18.52■□□□□ 0.56
PTPRF-202ENST00000372405 NCKAP5LQ9HCH0 1330 aa18.52■□□□□ 0.56
PTPRF-202ENST00000372405 PPIP5K1Q6PFW1 1433 aa18.52■□□□□ 0.56
PTPRF-202ENST00000372405 INSRP06213 1382 aa18.52■□□□□ 0.56
PTPRF-202ENST00000372405 CHD2O14647 1828 aaKnown RBP18.52■□□□□ 0.56
PTPRF-202ENST00000372405 NUDT16Q96DE0 195 aaKnown RBP18.51■□□□□ 0.55
PTPRF-202ENST00000372405 KIF20BQ96Q89 1820 aa18.51■□□□□ 0.55
PTPRF-202ENST00000372405 CPSF1Q10570 1443 aaKnown RBP18.51■□□□□ 0.55
PTPRF-202ENST00000372405 TOPAZ1Q8N9V7 1692 aa18.51■□□□□ 0.55
PTPRF-202ENST00000372405 PIK3R4Q99570 1358 aa18.51■□□□□ 0.55
PTPRF-202ENST00000372405 HDGFL2Q7Z4V5 671 aaPredicted RBP18.5■□□□□ 0.55
PTPRF-202ENST00000372405 CDC42BPGQ6DT37 1551 aa18.5■□□□□ 0.55
PTPRF-202ENST00000372405 TNNT2P45379 298 aaPredicted RBP18.5■□□□□ 0.55
PTPRF-202ENST00000372405 ADAMTS8Q9UP79 889 aa18.5■□□□□ 0.55
PTPRF-202ENST00000372405 AKAP12Q02952 1782 aa18.49■□□□□ 0.55
PTPRF-202ENST00000372405 MON2Q7Z3U7 1717 aa18.49■□□□□ 0.55
PTPRF-202ENST00000372405 FYB1O15117 783 aa18.49■□□□□ 0.55
PTPRF-202ENST00000372405 KCNA6P17658 529 aa18.49■□□□□ 0.55
PTPRF-202ENST00000372405 CCDC61Q9Y6R9 512 aa18.48■□□□□ 0.55
PTPRF-202ENST00000372405 SHPRHQ149N8 1683 aa18.48■□□□□ 0.55
PTPRF-202ENST00000372405 POLR3AO14802 1390 aaPredicted RBP18.48■□□□□ 0.55
PTPRF-202ENST00000372405 GGNBP2Q9H3C7 697 aa18.48■□□□□ 0.55
PTPRF-202ENST00000372405 ITSN1Q15811 1721 aa18.47■□□□□ 0.55
PTPRF-202ENST00000372405 NPHP4O75161 1426 aaPredicted RBP18.45■□□□□ 0.54
PTPRF-202ENST00000372405 RGPD8O14715 1765 aaPredicted RBP18.45■□□□□ 0.54
PTPRF-202ENST00000372405 NKTRP30414 1462 aaKnown RBP18.44■□□□□ 0.54
PTPRF-202ENST00000372405 WDR43Q15061 677 aaKnown RBP eCLIP18.44■□□□□ 0.544e-6■□□□□ 8.9
PTPRF-202ENST00000372405 EDC4Q6P2E9 1401 aaKnown RBP18.44■□□□□ 0.54
PTPRF-202ENST00000372405 MTHFSP49914 203 aa18.43■□□□□ 0.54
PTPRF-202ENST00000372405 NUTM2FA1L443 756 aa18.42■□□□□ 0.54
PTPRF-202ENST00000372405 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.42■□□□□ 0.54
PTPRF-202ENST00000372405 NALCNQ8IZF0 1738 aa18.42■□□□□ 0.54
PTPRF-202ENST00000372405 NRKQ7Z2Y5 1582 aa18.42■□□□□ 0.54
PTPRF-202ENST00000372405 SMG6Q86US8 1419 aaKnown RBP18.41■□□□□ 0.54
PTPRF-202ENST00000372405 FMN2Q9NZ56 1722 aa18.4■□□□□ 0.54
PTPRF-202ENST00000372405 SALL2Q9Y467 1007 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-202ENST00000372405 PLEKHG3A1L390 1219 aa18.39■□□□□ 0.53
PTPRF-202ENST00000372405 SUPT16HQ9Y5B9 1047 aaKnown RBP18.38■□□□□ 0.53
PTPRF-202ENST00000372405 ACEP12821 1306 aa18.38■□□□□ 0.53
PTPRF-202ENST00000372405 NME9Q86XW9 330 aa18.37■□□□□ 0.53
PTPRF-202ENST00000372405 COL3A1P02461 1466 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-202ENST00000372405 NWD1Q149M9 1564 aa18.37■□□□□ 0.53
PTPRF-202ENST00000372405 KDM4FA0A1W2PPD8 638 aa18.37■□□□□ 0.53
PTPRF-202ENST00000372405 ZRANB1Q9UGI0 708 aa18.37■□□□□ 0.53
PTPRF-202ENST00000372405 NUDCQ9Y266 331 aa18.37■□□□□ 0.53
PTPRF-202ENST00000372405 ZNF692Q9BU19 519 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-202ENST00000372405 CCDC146Q8IYE0 955 aa18.35■□□□□ 0.53
PTPRF-202ENST00000372405 MAP2P11137 1827 aaKnown RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms