RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 PPP1R9BQ96SB3 815 aa14.8□□□□□ -0.04
SMARCA1-201ENST00000371121 MFAP1P55081 439 aaKnown RBP14.8□□□□□ -0.04
SMARCA1-201ENST00000371121 KIAA1211Q6ZU35 1233 aa14.8□□□□□ -0.04
SMARCA1-201ENST00000371121 TSPY4P0CV99 314 aa14.79□□□□□ -0.04
SMARCA1-201ENST00000371121 TSPY10P0CW01 314 aa14.79□□□□□ -0.04
SMARCA1-201ENST00000371121 RAB3GAP1Q15042 981 aa14.79□□□□□ -0.04
SMARCA1-201ENST00000371121 PMFBP1Q8TBY8 1022 aa14.79□□□□□ -0.04
SMARCA1-201ENST00000371121 RRP7AQ9Y3A4 280 aaKnown RBP14.79□□□□□ -0.04
SMARCA1-201ENST00000371121 KIAA1210Q9ULL0 1709 aa14.79□□□□□ -0.04
SMARCA1-201ENST00000371121 ARHGAP31Q2M1Z3 1444 aa14.78□□□□□ -0.04
SMARCA1-201ENST00000371121 POLR3AO14802 1390 aaPredicted RBP14.78□□□□□ -0.04
SMARCA1-201ENST00000371121 ADGRB2O60241 1585 aa14.78□□□□□ -0.04
SMARCA1-201ENST00000371121 RBM25P49756 843 aaKnown RBP14.78□□□□□ -0.04
SMARCA1-201ENST00000371121 SMC5Q8IY18 1101 aa14.78□□□□□ -0.04
SMARCA1-201ENST00000371121 TPM2P07951 284 aa14.77□□□□□ -0.04
SMARCA1-201ENST00000371121 PPRC1Q5VV67 1664 aaKnown RBP14.77□□□□□ -0.05
SMARCA1-201ENST00000371121 ABCA6Q8N139 1617 aa14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 ZC3H13Q5T200 1668 aaKnown RBP14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 KANK1Q14678 1352 aa14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 MYO3AQ8NEV4 1616 aa14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 DDX11L8A8MPP1 907 aa14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 OFD1O75665 1012 aa14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 PLEKHG5O94827 1062 aa14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 CALD1Q05682 793 aaKnown RBP14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 ISY1Q9ULR0 285 aaKnown RBP14.76□□□□□ -0.05
SMARCA1-201ENST00000371121 TRPM2O94759 1503 aa14.75□□□□□ -0.05
SMARCA1-201ENST00000371121 MVPQ14764 893 aaKnown RBP14.75□□□□□ -0.05
SMARCA1-201ENST00000371121 IFT172Q9UG01 1749 aa14.75□□□□□ -0.05
SMARCA1-201ENST00000371121 CFAP74Q9C0B2 1584 aa14.75□□□□□ -0.05
SMARCA1-201ENST00000371121 RBM10P98175 930 aaKnown RBP14.75□□□□□ -0.05
SMARCA1-201ENST00000371121 SNX21Q969T3 373 aa14.75□□□□□ -0.05
SMARCA1-201ENST00000371121 UPF2Q9HAU5 1272 aaKnown RBP14.75□□□□□ -0.05
SMARCA1-201ENST00000371121 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.74□□□□□ -0.051e-9■■□□□ 11.5
SMARCA1-201ENST00000371121 MRC2Q9UBG0 1479 aa14.73□□□□□ -0.05
SMARCA1-201ENST00000371121 RBM42Q9BTD8 480 aaKnown RBP14.72□□□□□ -0.05
SMARCA1-201ENST00000371121 INO80Q9ULG1 1556 aaPredicted RBP14.72□□□□□ -0.05
SMARCA1-201ENST00000371121 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.72□□□□□ -0.05
SMARCA1-201ENST00000371121 IFT140Q96RY7 1462 aa14.72□□□□□ -0.05
SMARCA1-201ENST00000371121 NEUROD2Q15784 382 aa14.72□□□□□ -0.05
SMARCA1-201ENST00000371121 TCP11L2Q8N4U5 519 aa14.72□□□□□ -0.05
SMARCA1-201ENST00000371121 CANXP27824 592 aaKnown RBP14.72□□□□□ -0.05
SMARCA1-201ENST00000371121 ZNF518AQ6AHZ1 1483 aa14.71□□□□□ -0.05
SMARCA1-201ENST00000371121 HDAC1Q13547 482 aaPredicted RBP14.71□□□□□ -0.05
SMARCA1-201ENST00000371121 AAMPQ13685 434 aa14.71□□□□□ -0.05
SMARCA1-201ENST00000371121 CLEC17AQ6ZS10 378 aa14.71□□□□□ -0.05
SMARCA1-201ENST00000371121 RWDD1Q9H446 243 aaPredicted RBP14.71□□□□□ -0.05
SMARCA1-201ENST00000371121 PLEKHD1A6NEE1 506 aa14.7□□□□□ -0.06
SMARCA1-201ENST00000371121 ZSCAN30Q86W11 494 aa14.7□□□□□ -0.06
SMARCA1-201ENST00000371121 SSFA2P28290 1259 aa14.7□□□□□ -0.06
SMARCA1-201ENST00000371121 IBTKQ9P2D0 1353 aaPredicted RBP14.7□□□□□ -0.06
SMARCA1-201ENST00000371121 CD109Q6YHK3 1445 aa14.69□□□□□ -0.06
SMARCA1-201ENST00000371121 MROH2AA6NES4 1674 aa14.69□□□□□ -0.06
SMARCA1-201ENST00000371121 MAP3K4Q9Y6R4 1608 aa14.69□□□□□ -0.06
SMARCA1-201ENST00000371121 TRIM27P14373 513 aa14.69□□□□□ -0.06
SMARCA1-201ENST00000371121 PTPRTO14522 1441 aa14.69□□□□□ -0.06
SMARCA1-201ENST00000371121 GAS2L2Q8NHY3 880 aa14.69□□□□□ -0.06
SMARCA1-201ENST00000371121 USP32Q8NFA0 1604 aa14.69□□□□□ -0.06
SMARCA1-201ENST00000371121 CCDC173Q0VFZ6 552 aa14.68□□□□□ -0.06
SMARCA1-201ENST00000371121 NGEFQ8N5V2 710 aa14.68□□□□□ -0.06
SMARCA1-201ENST00000371121 PDLIM2Q96JY6 352 aa14.68□□□□□ -0.06
SMARCA1-201ENST00000371121 NOS1P29475 1434 aa14.68□□□□□ -0.06
SMARCA1-201ENST00000371121 DEPDC5O75140 1603 aa14.68□□□□□ -0.06
SMARCA1-201ENST00000371121 UGGT1Q9NYU2 1555 aa14.68□□□□□ -0.06
SMARCA1-201ENST00000371121 FOXD4L1Q9NU39 408 aa14.68□□□□□ -0.06
SMARCA1-201ENST00000371121 HSCBQ8IWL3 235 aa14.67□□□□□ -0.06
SMARCA1-201ENST00000371121 NASPP49321 788 aaPredicted RBP14.67□□□□□ -0.06
SMARCA1-201ENST00000371121 WDR63Q8IWG1 891 aa14.67□□□□□ -0.06
SMARCA1-201ENST00000371121 PKP1Q13835 747 aa14.66□□□□□ -0.06
SMARCA1-201ENST00000371121 CCDC27Q2M243 656 aa14.66□□□□□ -0.06
SMARCA1-201ENST00000371121 TRIM44Q96DX7 344 aaPredicted RBP14.66□□□□□ -0.06
SMARCA1-201ENST00000371121 TERF1P54274 439 aa14.66□□□□□ -0.06
SMARCA1-201ENST00000371121 JARID2Q92833 1246 aaPredicted RBP14.66□□□□□ -0.06
SMARCA1-201ENST00000371121 TSR2Q969E8 191 aaKnown RBP14.66□□□□□ -0.06
SMARCA1-201ENST00000371121 RUNDC1Q96C34 613 aa14.66□□□□□ -0.06
SMARCA1-201ENST00000371121 RBSNQ9H1K0 784 aa14.65□□□□□ -0.06
SMARCA1-201ENST00000371121 KNDC1Q76NI1 1749 aa14.65□□□□□ -0.06
SMARCA1-201ENST00000371121 JPH4Q96JJ6 628 aa14.65□□□□□ -0.06
SMARCA1-201ENST00000371121 ZBTB40Q9NUA8 1239 aa14.65□□□□□ -0.06
SMARCA1-201ENST00000371121 CIZ1Q9ULV3 898 aaPredicted RBP14.65□□□□□ -0.06
SMARCA1-201ENST00000371121 ZNF500O60304 480 aaPredicted RBP14.65□□□□□ -0.06
SMARCA1-201ENST00000371121 NUCB1Q02818 461 aa14.65□□□□□ -0.06
SMARCA1-201ENST00000371121 PODXL2Q9NZ53 605 aa14.65□□□□□ -0.06
SMARCA1-201ENST00000371121 CYP2E1P05181 493 aaPredicted RBP14.64□□□□□ -0.07
SMARCA1-201ENST00000371121 XPCQ01831 940 aaPredicted RBP14.64□□□□□ -0.07
SMARCA1-201ENST00000371121 NOL7Q9UMY1 257 aaKnown RBP14.64□□□□□ -0.07
SMARCA1-201ENST00000371121 ARHGAP5Q13017 1502 aa14.64□□□□□ -0.07
SMARCA1-201ENST00000371121 KLHL40Q2TBA0 621 aa14.64□□□□□ -0.07
SMARCA1-201ENST00000371121 DZIP1LQ8IYY4 767 aaKnown RBP14.64□□□□□ -0.07
SMARCA1-201ENST00000371121 NSD3Q9BZ95 1437 aa14.63□□□□□ -0.07
SMARCA1-201ENST00000371121 BAG4O95429 457 aaKnown RBP14.63□□□□□ -0.07
SMARCA1-201ENST00000371121 ZNF445P59923 1031 aa14.63□□□□□ -0.07
SMARCA1-201ENST00000371121 CHAMP1Q96JM3 812 aa14.63□□□□□ -0.07
SMARCA1-201ENST00000371121 QRICH2Q9H0J4 1663 aa14.62□□□□□ -0.07
SMARCA1-201ENST00000371121 SSH1Q8WYL5 1049 aa14.62□□□□□ -0.07
SMARCA1-201ENST00000371121 R3HCC1Q9Y3T6 440 aaKnown RBP14.62□□□□□ -0.07
SMARCA1-201ENST00000371121 NEURL4Q96JN8 1562 aa14.62□□□□□ -0.07
SMARCA1-201ENST00000371121 MED14O60244 1454 aa14.61□□□□□ -0.07
SMARCA1-201ENST00000371121 ZKSCAN2Q63HK3 967 aa14.61□□□□□ -0.07
SMARCA1-201ENST00000371121 PPIP5K1Q6PFW1 1433 aa14.61□□□□□ -0.07
SMARCA1-201ENST00000371121 TMEM57Q8N5G2 664 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms