RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 KIF15Q9NS87 1388 aa12.39□□□□□ -0.43
CD44-205ENST00000352818 ERBINQ96RT1 1412 aa12.38□□□□□ -0.43
CD44-205ENST00000352818 MYO5BQ9ULV0 1848 aa12.38□□□□□ -0.43
CD44-205ENST00000352818 NINLQ9Y2I6 1382 aa12.38□□□□□ -0.43
CD44-205ENST00000352818 RRBP1Q9P2E9 1410 aaKnown RBP12.37□□□□□ -0.43
CD44-205ENST00000352818 HDGFP51858 240 aaKnown RBP12.36□□□□□ -0.43
CD44-205ENST00000352818 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.36□□□□□ -0.43
CD44-205ENST00000352818 CAMKK2Q96RR4 588 aa12.36□□□□□ -0.43
CD44-205ENST00000352818 METP08581 1390 aa12.35□□□□□ -0.43
CD44-205ENST00000352818 VPS72Q15906 364 aa12.35□□□□□ -0.43
CD44-205ENST00000352818 FAM182BQ5T319 152 aa12.35□□□□□ -0.43
CD44-205ENST00000352818 RRP7BPQ9NSQ0 103 aa12.35□□□□□ -0.43
CD44-205ENST00000352818 PXDNQ92626 1479 aa12.34□□□□□ -0.43
CD44-205ENST00000352818 NALCNQ8IZF0 1738 aa12.34□□□□□ -0.43
CD44-205ENST00000352818 MARF1Q9Y4F3 1742 aaKnown RBP12.34□□□□□ -0.43
CD44-205ENST00000352818 KANK1Q14678 1352 aa12.33□□□□□ -0.44
CD44-205ENST00000352818 GCC2Q8IWJ2 1684 aa12.33□□□□□ -0.44
CD44-205ENST00000352818 NRXN3Q9Y4C0 1643 aa12.33□□□□□ -0.44
CD44-205ENST00000352818 XPCQ01831 940 aaPredicted RBP12.31□□□□□ -0.44
CD44-205ENST00000352818 DCAF8L1A6NGE4 600 aa12.3□□□□□ -0.44
CD44-205ENST00000352818 TNS1Q9HBL0 1735 aaKnown RBP12.3□□□□□ -0.44
CD44-205ENST00000352818 KCNQ2O43526 872 aa12.29□□□□□ -0.44
CD44-205ENST00000352818 KANK4Q5T7N3 995 aaPredicted RBP12.29□□□□□ -0.44
CD44-205ENST00000352818 SPON1Q9HCB6 807 aa12.29□□□□□ -0.44
CD44-205ENST00000352818 PPP1R1BQ9UD71 204 aaPredicted RBP12.29□□□□□ -0.44
CD44-205ENST00000352818 RPRD2Q5VT52 1461 aaKnown RBP12.28□□□□□ -0.44
CD44-205ENST00000352818 CHGAP10645 457 aaKnown RBP12.28□□□□□ -0.44
CD44-205ENST00000352818 RGPD1P0DJD0 1748 aa12.28□□□□□ -0.44
CD44-205ENST00000352818 ABCC5O15440 1437 aa12.28□□□□□ -0.44
CD44-205ENST00000352818 FAM98CQ17RN3 349 aaKnown RBP12.27□□□□□ -0.45
CD44-205ENST00000352818 ADGRL2O95490 1459 aa12.27□□□□□ -0.45
CD44-205ENST00000352818 NPHP3Q7Z494 1330 aa12.26□□□□□ -0.45
CD44-205ENST00000352818 FOXO3O43524 673 aa12.25□□□□□ -0.45
CD44-205ENST00000352818 ROBO2Q9HCK4 1378 aa12.25□□□□□ -0.45
CD44-205ENST00000352818 USP32Q8NFA0 1604 aa12.25□□□□□ -0.45
CD44-205ENST00000352818 MYOM3Q5VTT5 1437 aa12.24□□□□□ -0.45
CD44-205ENST00000352818 CCDC9Q9Y3X0 531 aaKnown RBP12.24□□□□□ -0.45
CD44-205ENST00000352818 PTPN23Q9H3S7 1636 aa12.23□□□□□ -0.45
CD44-205ENST00000352818 GIGYF1O75420 1035 aaPredicted RBP12.23□□□□□ -0.45
CD44-205ENST00000352818 TRIM37O94972 964 aa12.23□□□□□ -0.45
CD44-205ENST00000352818 GOLGB1Q14789 3259 aaKnown RBP12.22□□□□□ -0.45
CD44-205ENST00000352818 PARD3Q8TEW0 1356 aa12.22□□□□□ -0.45
CD44-205ENST00000352818 SPATA31A3Q5VYP0 1347 aa12.22□□□□□ -0.45
CD44-205ENST00000352818 A0A0G2JS52 829 aa12.22□□□□□ -0.45
CD44-205ENST00000352818 MYT1Q01538 1121 aa12.22□□□□□ -0.45
CD44-205ENST00000352818 CABLES1Q8TDN4 633 aa12.22□□□□□ -0.45
CD44-205ENST00000352818 RREB1Q92766 1687 aa12.22□□□□□ -0.45
CD44-205ENST00000352818 NUP188Q5SRE5 1749 aa12.21□□□□□ -0.45
CD44-205ENST00000352818 PTGER2P43116 358 aa12.21□□□□□ -0.45
CD44-205ENST00000352818 ESCO1Q5FWF5 840 aa12.21□□□□□ -0.45
CD44-205ENST00000352818 CCER1Q8TC90 406 aaPredicted RBP12.21□□□□□ -0.45
CD44-205ENST00000352818 PDGFDQ9GZP0 370 aaPredicted RBP12.21□□□□□ -0.45
CD44-205ENST00000352818 FAM83GA6ND36 823 aa12.2□□□□□ -0.46
CD44-205ENST00000352818 APBA3O96018 575 aa12.2□□□□□ -0.46
CD44-205ENST00000352818 NRKQ7Z2Y5 1582 aa12.2□□□□□ -0.46
CD44-205ENST00000352818 PLCH1Q4KWH8 1693 aa12.19□□□□□ -0.46
CD44-205ENST00000352818 SLC34A2O95436 690 aa12.19□□□□□ -0.46
CD44-205ENST00000352818 ADGRB2O60241 1585 aa12.18□□□□□ -0.46
CD44-205ENST00000352818 NWD2Q9ULI1 1742 aa12.17□□□□□ -0.46
CD44-205ENST00000352818 THSD7AQ9UPZ6 1657 aa12.17□□□□□ -0.46
CD44-205ENST00000352818 SYT17Q9BSW7 474 aa12.17□□□□□ -0.46
CD44-205ENST00000352818 CROCC2H7BZ55 1655 aa12.16□□□□□ -0.46
CD44-205ENST00000352818 NBPF8Q3BBV2 869 aa12.16□□□□□ -0.46
CD44-205ENST00000352818 NBPF14Q5TI25 921 aa12.16□□□□□ -0.46
CD44-205ENST00000352818 ANO8Q9HCE9 1232 aaPredicted RBP12.16□□□□□ -0.46
CD44-205ENST00000352818 DAPK1P53355 1430 aa12.16□□□□□ -0.46
CD44-205ENST00000352818 MYOM1P52179 1685 aa12.16□□□□□ -0.46
CD44-205ENST00000352818 NRAPQ86VF7 1730 aa12.15□□□□□ -0.46
CD44-205ENST00000352818 PRAG1Q86YV5 1406 aa12.15□□□□□ -0.46
CD44-205ENST00000352818 FHDC1Q9C0D6 1143 aaPredicted RBP12.15□□□□□ -0.46
CD44-205ENST00000352818 CHIC2Q9UKJ5 165 aa12.15□□□□□ -0.46
CD44-205ENST00000352818 SPATA31A5Q5VU36 1347 aa12.14□□□□□ -0.47
CD44-205ENST00000352818 SPATA31A7Q8IWB4 1347 aa12.14□□□□□ -0.47
CD44-205ENST00000352818 CLSPNQ9HAW4 1339 aa12.14□□□□□ -0.47
CD44-205ENST00000352818 FAM196AQ6ZSG2 479 aa12.14□□□□□ -0.47
CD44-205ENST00000352818 SHANK3Q9BYB0 1731 aa12.14□□□□□ -0.47
CD44-205ENST00000352818 CASZ1Q86V15 1759 aa12.13□□□□□ -0.47
CD44-205ENST00000352818 PLEKHG5O94827 1062 aa12.13□□□□□ -0.47
CD44-205ENST00000352818 ZBTB7AO95365 584 aa12.13□□□□□ -0.47
CD44-205ENST00000352818 CHD4Q14839 1912 aa12.13□□□□□ -0.47
CD44-205ENST00000352818 BTG4Q9NY30 223 aa12.12□□□□□ -0.47
CD44-205ENST00000352818 ANKRD30AQ9BXX3 1397 aa12.12□□□□□ -0.47
CD44-205ENST00000352818 CDC42BPGQ6DT37 1551 aa12.11□□□□□ -0.47
CD44-205ENST00000352818 LRPPRCP42704 1394 aaKnown RBP12.11□□□□□ -0.47
CD44-205ENST00000352818 NUTM2FA1L443 756 aa12.11□□□□□ -0.47
CD44-205ENST00000352818 SGIP1Q9BQI5 828 aa12.11□□□□□ -0.47
CD44-205ENST00000352818 CAPN15O75808 1086 aa12.1□□□□□ -0.47
CD44-205ENST00000352818 HSPA6P17066 643 aa12.1□□□□□ -0.47
CD44-205ENST00000352818 KRT28Q7Z3Y7 464 aa12.1□□□□□ -0.47
CD44-205ENST00000352818 IQGAP3Q86VI3 1631 aa12.1□□□□□ -0.47
CD44-205ENST00000352818 TNS3Q68CZ2 1445 aa12.1□□□□□ -0.47
CD44-205ENST00000352818 E9PCH4 1651 aa12.1□□□□□ -0.47
CD44-205ENST00000352818 ATF5Q9Y2D1 282 aaPredicted RBP12.09□□□□□ -0.47
CD44-205ENST00000352818 HFM1A2PYH4 1435 aa12.09□□□□□ -0.47
CD44-205ENST00000352818 ABCA3Q99758 1704 aa12.08□□□□□ -0.47
CD44-205ENST00000352818 HAP1P54257 671 aaPredicted RBP12.08□□□□□ -0.48
CD44-205ENST00000352818 COL13A1Q5TAT6 717 aaPredicted RBP12.08□□□□□ -0.48
CD44-205ENST00000352818 CCDC144AA2RUR9 1427 aa12.08□□□□□ -0.48
CD44-205ENST00000352818 DHX57Q6P158 1386 aaKnown RBP12.07□□□□□ -0.48
CD44-205ENST00000352818 NEXMIFQ5QGS0 1516 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms