RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 KIF1BO60333 1816 aa12.8□□□□□ -0.36
ATG4A-202ENST00000345734 WASHC2CQ9Y4E1 1318 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 NPATQ14207 1427 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 PIP4P2Q8N4L2 257 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 PHF8Q9UPP1 1060 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 ZMYM4Q5VZL5 1548 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 GPRASP1Q5JY77 1395 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 MADDQ8WXG6 1647 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 CCER2I3L3R5 266 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 CHRDL2Q6WN34 429 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 KIF12Q96FN5 646 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 POLR3GLQ9BT43 218 aa12.79□□□□□ -0.36
ATG4A-202ENST00000345734 CAMSAP1Q5T5Y3 1602 aa12.78□□□□□ -0.36
ATG4A-202ENST00000345734 MROH2AA6NES4 1674 aa12.78□□□□□ -0.36
ATG4A-202ENST00000345734 LAMC1P11047 1609 aa12.78□□□□□ -0.36
ATG4A-202ENST00000345734 SIGLEC1Q9BZZ2 1709 aa12.77□□□□□ -0.37
ATG4A-202ENST00000345734 NEURL4Q96JN8 1562 aa12.76□□□□□ -0.37
ATG4A-202ENST00000345734 BCL11AQ9H165 835 aa12.76□□□□□ -0.37
ATG4A-202ENST00000345734 FBXO22Q8NEZ5 403 aa12.74□□□□□ -0.37
ATG4A-202ENST00000345734 PHF12Q96QT6 1004 aa12.74□□□□□ -0.37
ATG4A-202ENST00000345734 ARID4BQ4LE39 1312 aaPredicted RBP12.74□□□□□ -0.37
ATG4A-202ENST00000345734 COL17A1Q9UMD9 1497 aaPredicted RBP12.74□□□□□ -0.37
ATG4A-202ENST00000345734 IFT172Q9UG01 1749 aa12.74□□□□□ -0.37
ATG4A-202ENST00000345734 ZC3H13Q5T200 1668 aaKnown RBP12.73□□□□□ -0.37
ATG4A-202ENST00000345734 ADGRB3O60242 1522 aa12.73□□□□□ -0.37
ATG4A-202ENST00000345734 ZRANB1Q9UGI0 708 aa12.73□□□□□ -0.37
ATG4A-202ENST00000345734 STAC3Q96MF2 364 aa12.71□□□□□ -0.37
ATG4A-202ENST00000345734 PRKRIP1Q9H875 184 aaPredicted RBP12.71□□□□□ -0.37
ATG4A-202ENST00000345734 NOS1P29475 1434 aa12.71□□□□□ -0.37
ATG4A-202ENST00000345734 SYNMO15061 1565 aa12.71□□□□□ -0.37
ATG4A-202ENST00000345734 IQGAP1P46940 1657 aa12.71□□□□□ -0.37
ATG4A-202ENST00000345734 GTF3C3Q9Y5Q9 886 aa12.71□□□□□ -0.38
ATG4A-202ENST00000345734 ADGRF5Q8IZF2 1346 aa12.71□□□□□ -0.38
ATG4A-202ENST00000345734 TESK2Q96S53 571 aa12.7□□□□□ -0.38
ATG4A-202ENST00000345734 MYOM2P54296 1465 aa12.7□□□□□ -0.38
ATG4A-202ENST00000345734 KIAA1210Q9ULL0 1709 aa12.7□□□□□ -0.38
ATG4A-202ENST00000345734 ARHGAP31Q2M1Z3 1444 aa12.7□□□□□ -0.38
ATG4A-202ENST00000345734 PIK3C2BO00750 1634 aa12.69□□□□□ -0.38
ATG4A-202ENST00000345734 REREQ9P2R6 1566 aa12.69□□□□□ -0.38
ATG4A-202ENST00000345734 PPLO60437 1756 aa12.69□□□□□ -0.38
ATG4A-202ENST00000345734 DISP3Q9P2K9 1392 aa12.69□□□□□ -0.38
ATG4A-202ENST00000345734 CD44P16070 742 aaKnown RBP12.68□□□□□ -0.38
ATG4A-202ENST00000345734 NLRP6P59044 892 aa12.68□□□□□ -0.38
ATG4A-202ENST00000345734 CCDC184Q52MB2 194 aa12.68□□□□□ -0.38
ATG4A-202ENST00000345734 CNGB1Q14028 1251 aaPredicted RBP12.68□□□□□ -0.38
ATG4A-202ENST00000345734 CFAP70Q5T0N1 1121 aa12.68□□□□□ -0.38
ATG4A-202ENST00000345734 LMOD2Q6P5Q4 547 aa12.68□□□□□ -0.38
ATG4A-202ENST00000345734 PREX1Q8TCU6 1659 aa12.67□□□□□ -0.38
ATG4A-202ENST00000345734 NRXN1Q9ULB1 1477 aa12.67□□□□□ -0.38
ATG4A-202ENST00000345734 AGLP35573 1532 aa12.67□□□□□ -0.38
ATG4A-202ENST00000345734 SCAF11Q99590 1463 aaKnown RBP12.67□□□□□ -0.38
ATG4A-202ENST00000345734 ARHGEF40Q8TER5 1519 aa12.66□□□□□ -0.38
ATG4A-202ENST00000345734 MYO5BQ9ULV0 1848 aa12.66□□□□□ -0.38
ATG4A-202ENST00000345734 IDI1Q13907 227 aa12.65□□□□□ -0.38
ATG4A-202ENST00000345734 TRPC6Q9Y210 931 aa12.65□□□□□ -0.38
ATG4A-202ENST00000345734 CLTCQ00610 1675 aaKnown RBP12.65□□□□□ -0.38
ATG4A-202ENST00000345734 MLECQ14165 292 aa12.65□□□□□ -0.38
ATG4A-202ENST00000345734 FBXO31Q5XUX0 539 aaPredicted RBP12.65□□□□□ -0.38
ATG4A-202ENST00000345734 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.64□□□□□ -0.39
ATG4A-202ENST00000345734 TMF1P82094 1093 aa12.64□□□□□ -0.39
ATG4A-202ENST00000345734 MS4A4AQ96JQ5 239 aa12.64□□□□□ -0.39
ATG4A-202ENST00000345734 SOX12O15370 315 aa12.63□□□□□ -0.39
ATG4A-202ENST00000345734 NUTM2DQ5VT03 806 aaPredicted RBP12.63□□□□□ -0.39
ATG4A-202ENST00000345734 RPGRIP1LQ68CZ1 1315 aa12.63□□□□□ -0.39
ATG4A-202ENST00000345734 NEXMIFQ5QGS0 1516 aa12.62□□□□□ -0.39
ATG4A-202ENST00000345734 PIK3C2GO75747 1445 aa12.62□□□□□ -0.39
ATG4A-202ENST00000345734 NCKAP5LQ9HCH0 1330 aa12.62□□□□□ -0.39
ATG4A-202ENST00000345734 SLC52A1Q9NWF4 448 aa12.62□□□□□ -0.39
ATG4A-202ENST00000345734 SEMA3EO15041 775 aa12.61□□□□□ -0.39
ATG4A-202ENST00000345734 E2F4Q16254 413 aa12.61□□□□□ -0.39
ATG4A-202ENST00000345734 MRS2Q9HD23 443 aa12.61□□□□□ -0.39
ATG4A-202ENST00000345734 ERVK-7P63135 1459 aa12.61□□□□□ -0.39
ATG4A-202ENST00000345734 TMEM131LA2VDJ0 1609 aa12.6□□□□□ -0.39
ATG4A-202ENST00000345734 TMEM106CQ9BVX2 250 aa12.6□□□□□ -0.39
ATG4A-202ENST00000345734 C14orf93Q9H972 538 aaKnown RBP12.6□□□□□ -0.39
ATG4A-202ENST00000345734 EIF3AQ14152 1382 aaKnown RBP12.6□□□□□ -0.39
ATG4A-202ENST00000345734 SETBP1Q9Y6X0 1596 aa12.59□□□□□ -0.39
ATG4A-202ENST00000345734 LARP6Q9BRS8 491 aaKnown RBP12.59□□□□□ -0.39
ATG4A-202ENST00000345734 GOLGA2Q08379 1002 aa12.58□□□□□ -0.4
ATG4A-202ENST00000345734 TMEM132EQ6IEE7 984 aa12.58□□□□□ -0.4
ATG4A-202ENST00000345734 PANK3Q9H999 370 aa12.58□□□□□ -0.4
ATG4A-202ENST00000345734 PER1O15534 1290 aaPredicted RBP12.58□□□□□ -0.4
ATG4A-202ENST00000345734 FAM9BQ8IZU0 186 aa12.58□□□□□ -0.4
ATG4A-202ENST00000345734 ADGRB1O14514 1584 aa12.58□□□□□ -0.4
ATG4A-202ENST00000345734 HNRNPUQ00839 825 aaKnown RBP eCLIP12.56□□□□□ -0.4
ATG4A-202ENST00000345734 MS4A3Q96HJ5 214 aa12.56□□□□□ -0.4
ATG4A-202ENST00000345734 MYO3AQ8NEV4 1616 aa12.56□□□□□ -0.4
ATG4A-202ENST00000345734 TRAK1Q9UPV9 953 aa12.56□□□□□ -0.4
ATG4A-202ENST00000345734 SPATA31D1Q6ZQQ2 1576 aa12.56□□□□□ -0.4
ATG4A-202ENST00000345734 ARHGEF1Q92888 912 aaKnown RBP12.55□□□□□ -0.4
ATG4A-202ENST00000345734 KDM5AP29375 1690 aaKnown RBP12.55□□□□□ -0.4
ATG4A-202ENST00000345734 MYOM1P52179 1685 aa12.54□□□□□ -0.4
ATG4A-202ENST00000345734 RALBP1Q15311 655 aa12.54□□□□□ -0.4
ATG4A-202ENST00000345734 ZFYVE9O95405 1425 aa12.54□□□□□ -0.4
ATG4A-202ENST00000345734 CDCA8Q53HL2 280 aa12.53□□□□□ -0.4
ATG4A-202ENST00000345734 ZMYM3Q14202 1370 aa12.53□□□□□ -0.4
ATG4A-202ENST00000345734 KTN1Q86UP2 1357 aaKnown RBP12.53□□□□□ -0.4
ATG4A-202ENST00000345734 CENPJQ9HC77 1338 aaPredicted RBP12.53□□□□□ -0.4
ATG4A-202ENST00000345734 CC2D1BQ5T0F9 858 aaKnown RBP12.53□□□□□ -0.4
ATG4A-202ENST00000345734 ESF1Q9H501 851 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms