RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 SLC4A3P48751 1232 aa8.56□□□□□ -1.04
ZNF540-201ENST00000316433 ARHGAP5Q13017 1502 aa8.56□□□□□ -1.04
ZNF540-201ENST00000316433 IQSEC2Q5JU85 1478 aa8.56□□□□□ -1.04
ZNF540-201ENST00000316433 VGLL3A8MV65 326 aa8.55□□□□□ -1.04
ZNF540-201ENST00000316433 ATP7AQ04656 1500 aa8.55□□□□□ -1.04
ZNF540-201ENST00000316433 FRMPD1Q5SYB0 1578 aa8.55□□□□□ -1.04
ZNF540-201ENST00000316433 ESPNB1AK53 854 aa8.55□□□□□ -1.04
ZNF540-201ENST00000316433 XRCC6P12956 609 aaKnown RBP eCLIP8.54□□□□□ -1.04
ZNF540-201ENST00000316433 TRMT2AQ8IZ69 625 aaKnown RBP8.54□□□□□ -1.04
ZNF540-201ENST00000316433 TESK2Q96S53 571 aa8.54□□□□□ -1.04
ZNF540-201ENST00000316433 MED14O60244 1454 aa8.54□□□□□ -1.04
ZNF540-201ENST00000316433 YEATS2Q9ULM3 1422 aa8.54□□□□□ -1.04
ZNF540-201ENST00000316433 MROH2AA6NES4 1674 aa8.54□□□□□ -1.04
ZNF540-201ENST00000316433 RRP1P56182 461 aaKnown RBP8.54□□□□□ -1.04
ZNF540-201ENST00000316433 CCDC184Q52MB2 194 aa8.54□□□□□ -1.04
ZNF540-201ENST00000316433 KIAA1211Q6ZU35 1233 aa8.53□□□□□ -1.04
ZNF540-201ENST00000316433 ANP32BQ92688 251 aaKnown RBP8.53□□□□□ -1.04
ZNF540-201ENST00000316433 KDM2BQ8NHM5 1336 aa8.53□□□□□ -1.04
ZNF540-201ENST00000316433 PKD2Q13563 968 aa8.52□□□□□ -1.04
ZNF540-201ENST00000316433 PRDM10Q9NQV6 1147 aa8.52□□□□□ -1.04
ZNF540-201ENST00000316433 KIDINS220Q9ULH0 1771 aa8.52□□□□□ -1.04
ZNF540-201ENST00000316433 TNNT2P45379 298 aaPredicted RBP8.52□□□□□ -1.05
ZNF540-201ENST00000316433 JPH4Q96JJ6 628 aa8.52□□□□□ -1.05
ZNF540-201ENST00000316433 HIRIP3Q9BW71 556 aaPredicted RBP8.52□□□□□ -1.05
ZNF540-201ENST00000316433 GOLGA6L3A6NEY3 463 aa8.52□□□□□ -1.05
ZNF540-201ENST00000316433 HAP1P54257 671 aaPredicted RBP8.52□□□□□ -1.05
ZNF540-201ENST00000316433 ADGRB1O14514 1584 aa8.52□□□□□ -1.05
ZNF540-201ENST00000316433 ZNF644Q9H582 1327 aaPredicted RBP8.51□□□□□ -1.05
ZNF540-201ENST00000316433 ZFYVE9O95405 1425 aa8.51□□□□□ -1.05
ZNF540-201ENST00000316433 QRICH2Q9H0J4 1663 aa8.51□□□□□ -1.05
ZNF540-201ENST00000316433 PLEKHD1A6NEE1 506 aa8.51□□□□□ -1.05
ZNF540-201ENST00000316433 RIPK4P57078 832 aa8.51□□□□□ -1.05
ZNF540-201ENST00000316433 BCCIPQ9P287 314 aaKnown RBP eCLIP8.51□□□□□ -1.05
ZNF540-201ENST00000316433 ARHGEF28Q8N1W1 1705 aaKnown RBP8.51□□□□□ -1.05
ZNF540-201ENST00000316433 ERBB4Q15303 1308 aa8.51□□□□□ -1.05
ZNF540-201ENST00000316433 VGFO15240 615 aaPredicted RBP8.5□□□□□ -1.05
ZNF540-201ENST00000316433 PANK2Q9BZ23 570 aa8.5□□□□□ -1.05
ZNF540-201ENST00000316433 ABCC3O15438 1527 aa8.5□□□□□ -1.05
ZNF540-201ENST00000316433 FSD2A1L4K1 749 aa8.5□□□□□ -1.05
ZNF540-201ENST00000316433 KIF20AO95235 890 aa8.5□□□□□ -1.05
ZNF540-201ENST00000316433 MTERF4Q7Z6M4 381 aaKnown RBP8.5□□□□□ -1.05
ZNF540-201ENST00000316433 FAM13BQ9NYF5 915 aa8.5□□□□□ -1.05
ZNF540-201ENST00000316433 TERF1P54274 439 aa8.49□□□□□ -1.05
ZNF540-201ENST00000316433 RNF216Q9NWF9 866 aaPredicted RBP8.49□□□□□ -1.05
ZNF540-201ENST00000316433 CAMSAP1Q5T5Y3 1602 aa8.49□□□□□ -1.05
ZNF540-201ENST00000316433 POLR3AO14802 1390 aaPredicted RBP8.49□□□□□ -1.05
ZNF540-201ENST00000316433 ZSCAN20P17040 1043 aaPredicted RBP8.49□□□□□ -1.05
ZNF540-201ENST00000316433 CDCA8Q53HL2 280 aa8.49□□□□□ -1.05
ZNF540-201ENST00000316433 NSD2O96028 1365 aa8.49□□□□□ -1.05
ZNF540-201ENST00000316433 ARHGAP31Q2M1Z3 1444 aa8.48□□□□□ -1.05
ZNF540-201ENST00000316433 ERVK-7P63135 1459 aa8.48□□□□□ -1.05
ZNF540-201ENST00000316433 MLH3Q9UHC1 1453 aa8.48□□□□□ -1.05
ZNF540-201ENST00000316433 RGS22Q8NE09 1264 aa8.48□□□□□ -1.05
ZNF540-201ENST00000316433 ASXL2Q76L83 1435 aa8.47□□□□□ -1.05
ZNF540-201ENST00000316433 CDK11BP21127 795 aaKnown RBP8.47□□□□□ -1.05
ZNF540-201ENST00000316433 DISP3Q9P2K9 1392 aa8.47□□□□□ -1.05
ZNF540-201ENST00000316433 ARHGEF40Q8TER5 1519 aa8.47□□□□□ -1.05
ZNF540-201ENST00000316433 TSPY4P0CV99 314 aa8.47□□□□□ -1.05
ZNF540-201ENST00000316433 TSPY10P0CW01 314 aa8.47□□□□□ -1.05
ZNF540-201ENST00000316433 IRX3P78415 501 aaPredicted RBP8.47□□□□□ -1.05
ZNF540-201ENST00000316433 GTPBP4Q9BZE4 634 aaKnown RBP8.46□□□□□ -1.05
ZNF540-201ENST00000316433 NKTRP30414 1462 aaKnown RBP8.46□□□□□ -1.05
ZNF540-201ENST00000316433 LETM1O95202 739 aaPredicted RBP8.46□□□□□ -1.06
ZNF540-201ENST00000316433 TAF3Q5VWG9 929 aa8.46□□□□□ -1.06
ZNF540-201ENST00000316433 FAM9BQ8IZU0 186 aa8.46□□□□□ -1.06
ZNF540-201ENST00000316433 CARD11Q9BXL7 1154 aa8.46□□□□□ -1.06
ZNF540-201ENST00000316433 CHIC2Q9UKJ5 165 aa8.46□□□□□ -1.06
ZNF540-201ENST00000316433 NLRP1Q9C000 1473 aa8.45□□□□□ -1.06
ZNF540-201ENST00000316433 MYH16Q9H6N6 1097 aa8.45□□□□□ -1.06
ZNF540-201ENST00000316433 KNDC1Q76NI1 1749 aa8.45□□□□□ -1.06
ZNF540-201ENST00000316433 MRE11P49959 708 aa8.45□□□□□ -1.06
ZNF540-201ENST00000316433 TRIM44Q96DX7 344 aaPredicted RBP8.45□□□□□ -1.06
ZNF540-201ENST00000316433 ATP1B4Q9UN42 357 aaPredicted RBP8.45□□□□□ -1.06
ZNF540-201ENST00000316433 RCAN3Q9UKA8 241 aa8.45□□□□□ -1.06
ZNF540-201ENST00000316433 OFD1O75665 1012 aa8.44□□□□□ -1.06
ZNF540-201ENST00000316433 DNTTIP2Q5QJE6 756 aaKnown RBP8.44□□□□□ -1.06
ZNF540-201ENST00000316433 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-201ENST00000316433 CENPQQ7L2Z9 268 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-201ENST00000316433 NEXMIFQ5QGS0 1516 aa8.44□□□□□ -1.06
ZNF540-201ENST00000316433 DLC1Q96QB1 1528 aa8.43□□□□□ -1.06
ZNF540-201ENST00000316433 ARID3AQ99856 593 aa8.43□□□□□ -1.06
ZNF540-201ENST00000316433 GLI2P10070 1586 aa8.43□□□□□ -1.06
ZNF540-201ENST00000316433 KIF20BQ96Q89 1820 aa8.43□□□□□ -1.06
ZNF540-201ENST00000316433 CNKSR2Q8WXI2 1034 aa8.43□□□□□ -1.06
ZNF540-201ENST00000316433 CCDC94Q9BW85 323 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-201ENST00000316433 N4BP2Q86UW6 1770 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-201ENST00000316433 SETD1AO15047 1707 aaKnown RBP8.43□□□□□ -1.06
ZNF540-201ENST00000316433 TMF1P82094 1093 aa8.43□□□□□ -1.06
ZNF540-201ENST00000316433 CCDC27Q2M243 656 aa8.42□□□□□ -1.06
ZNF540-201ENST00000316433 TMC1Q8TDI8 760 aa8.42□□□□□ -1.06
ZNF540-201ENST00000316433 NOS1P29475 1434 aa8.42□□□□□ -1.06
ZNF540-201ENST00000316433 ST20-MTHFSA0A0A6YYL1 179 aa8.42□□□□□ -1.06
ZNF540-201ENST00000316433 CNPY4Q8N129 248 aa8.42□□□□□ -1.06
ZNF540-201ENST00000316433 CHMP7Q8WUX9 453 aaPredicted RBP8.42□□□□□ -1.06
ZNF540-201ENST00000316433 CT47B1P0C2W7 299 aaPredicted RBP8.41□□□□□ -1.06
ZNF540-201ENST00000316433 NEO1Q92859 1461 aa8.41□□□□□ -1.06
ZNF540-201ENST00000316433 ERCC6L2Q5T890 1561 aa8.41□□□□□ -1.06
ZNF540-201ENST00000316433 LRRC7Q96NW7 1537 aa8.41□□□□□ -1.06
ZNF540-201ENST00000316433 RICTORQ6R327 1708 aa8.41□□□□□ -1.06
ZNF540-201ENST00000316433 USP54Q70EL1 1684 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms