RNA–Protein interactions for RNA: ENST00000306658.7

KRT28-201, Transcript of keratin 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KRT28, Length 1,685 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28-201ENST00000306658 KDM4FA0A1W2PPD8 638 aa23.97■■□□□ 1.43
KRT28-201ENST00000306658 PIK3R4Q99570 1358 aa23.96■■□□□ 1.43
KRT28-201ENST00000306658 SRPK2P78362 688 aaKnown RBP23.95■■□□□ 1.43
KRT28-201ENST00000306658 PLEKHH1Q9ULM0 1364 aa23.95■■□□□ 1.42
KRT28-201ENST00000306658 AMOTL2Q9Y2J4 779 aa23.95■■□□□ 1.42
KRT28-201ENST00000306658 KNSTRNQ9Y448 316 aa23.95■■□□□ 1.42
KRT28-201ENST00000306658 CABP2Q9NPB3 220 aa23.94■■□□□ 1.42
KRT28-201ENST00000306658 PTPRUQ92729 1446 aa23.93■■□□□ 1.42
KRT28-201ENST00000306658 RALBP1Q15311 655 aa23.93■■□□□ 1.42
KRT28-201ENST00000306658 TMC1Q8TDI8 760 aa23.93■■□□□ 1.42
KRT28-201ENST00000306658 ATAD2Q6PL18 1390 aa23.92■■□□□ 1.42
KRT28-201ENST00000306658 ROBO2Q9HCK4 1378 aa23.92■■□□□ 1.42
KRT28-201ENST00000306658 CDK19Q9BWU1 502 aa23.92■■□□□ 1.42
KRT28-201ENST00000306658 CNGB1Q14028 1251 aaPredicted RBP23.91■■□□□ 1.42
KRT28-201ENST00000306658 NINLQ9Y2I6 1382 aa23.91■■□□□ 1.42
KRT28-201ENST00000306658 NPHP4O75161 1426 aaPredicted RBP23.9■■□□□ 1.42
KRT28-201ENST00000306658 SLC12A5Q9H2X9 1139 aa23.89■■□□□ 1.42
KRT28-201ENST00000306658 YTHDC1Q96MU7 727 aaKnown RBP23.88■■□□□ 1.41
KRT28-201ENST00000306658 PTCH1Q13635 1447 aa23.88■■□□□ 1.41
KRT28-201ENST00000306658 WASLO00401 505 aaPredicted RBP23.87■■□□□ 1.41
KRT28-201ENST00000306658 NCKAP5LQ9HCH0 1330 aa23.86■■□□□ 1.41
KRT28-201ENST00000306658 CC2D1BQ5T0F9 858 aaKnown RBP23.85■■□□□ 1.41
KRT28-201ENST00000306658 XRN1Q8IZH2 1706 aaKnown RBP23.84■■□□□ 1.41
KRT28-201ENST00000306658 PARD3Q8TEW0 1356 aa23.84■■□□□ 1.41
KRT28-201ENST00000306658 NPC1L1Q9UHC9 1359 aa23.84■■□□□ 1.41
KRT28-201ENST00000306658 MYBBP1AQ9BQG0 1328 aaKnown RBP23.83■■□□□ 1.41
KRT28-201ENST00000306658 AMER1Q5JTC6 1135 aaPredicted RBP23.83■■□□□ 1.41
KRT28-201ENST00000306658 CARD14Q9BXL6 1004 aa23.83■■□□□ 1.41
KRT28-201ENST00000306658 ANKRD36BQ8N2N9 1353 aa23.83■■□□□ 1.41
KRT28-201ENST00000306658 MRS2Q9HD23 443 aa23.83■■□□□ 1.4
KRT28-201ENST00000306658 CHD2O14647 1828 aaKnown RBP23.81■■□□□ 1.4
KRT28-201ENST00000306658 KCNA6P17658 529 aa23.81■■□□□ 1.4
KRT28-201ENST00000306658 TERF2IPQ9NYB0 399 aa23.81■■□□□ 1.4
KRT28-201ENST00000306658 ADGRB2O60241 1585 aa23.8■■□□□ 1.4
KRT28-201ENST00000306658 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.79■■□□□ 1.4
KRT28-201ENST00000306658 NSD3Q9BZ95 1437 aa23.78■■□□□ 1.4
KRT28-201ENST00000306658 CCDC184Q52MB2 194 aa23.77■■□□□ 1.4
KRT28-201ENST00000306658 CABP1Q9NZU7 370 aa23.77■■□□□ 1.4
KRT28-201ENST00000306658 CENPBP07199 599 aaPredicted RBP23.76■■□□□ 1.39
KRT28-201ENST00000306658 HDGFL2Q7Z4V5 671 aaPredicted RBP23.76■■□□□ 1.39
KRT28-201ENST00000306658 NLRP13Q86W25 1043 aa23.76■■□□□ 1.39
KRT28-201ENST00000306658 NUDT16Q96DE0 195 aaKnown RBP23.76■■□□□ 1.39
KRT28-201ENST00000306658 BRD4O60885 1362 aaPredicted RBP23.75■■□□□ 1.39
KRT28-201ENST00000306658 CCDC61Q9Y6R9 512 aa23.75■■□□□ 1.39
KRT28-201ENST00000306658 CGNL1Q0VF96 1302 aa23.75■■□□□ 1.39
KRT28-201ENST00000306658 A0A1W2PP64 1363 aa23.74■■□□□ 1.39
KRT28-201ENST00000306658 HSPA2P54652 639 aa23.74■■□□□ 1.39
KRT28-201ENST00000306658 LMTK3Q96Q04 1460 aa23.73■■□□□ 1.39
KRT28-201ENST00000306658 USP32Q8NFA0 1604 aa23.72■■□□□ 1.39
KRT28-201ENST00000306658 ATP7BP35670 1465 aa23.72■■□□□ 1.39
KRT28-201ENST00000306658 PPIP5K1Q6PFW1 1433 aa23.71■■□□□ 1.39
KRT28-201ENST00000306658 CD163L1Q9NR16 1453 aa23.71■■□□□ 1.39
KRT28-201ENST00000306658 NSD2O96028 1365 aa23.69■■□□□ 1.38
KRT28-201ENST00000306658 PRR36Q9H6K5 1346 aa23.67■■□□□ 1.38
KRT28-201ENST00000306658 FAM9BQ8IZU0 186 aa23.67■■□□□ 1.38
KRT28-201ENST00000306658 NWD1Q149M9 1564 aa23.67■■□□□ 1.38
KRT28-201ENST00000306658 PPP2R1AP30153 589 aa23.67■■□□□ 1.38
KRT28-201ENST00000306658 MORC1Q86VD1 984 aa23.66■■□□□ 1.38
KRT28-201ENST00000306658 ZNF692Q9BU19 519 aaPredicted RBP23.65■■□□□ 1.38
KRT28-201ENST00000306658 CPSF1Q10570 1443 aaKnown RBP23.65■■□□□ 1.38
KRT28-201ENST00000306658 PNISRQ8TF01 805 aaKnown RBP23.64■■□□□ 1.37
KRT28-201ENST00000306658 CDC42BPGQ6DT37 1551 aa23.63■■□□□ 1.37
KRT28-201ENST00000306658 PLEKHG3A1L390 1219 aa23.63■■□□□ 1.37
KRT28-201ENST00000306658 NUTM2FA1L443 756 aa23.63■■□□□ 1.37
KRT28-201ENST00000306658 ANKARQ7Z5J8 1434 aa23.62■■□□□ 1.37
KRT28-201ENST00000306658 NKTRP30414 1462 aaKnown RBP23.61■■□□□ 1.37
KRT28-201ENST00000306658 PROSER2Q86WR7 435 aaPredicted RBP23.61■■□□□ 1.37
KRT28-201ENST00000306658 TOPAZ1Q8N9V7 1692 aa23.61■■□□□ 1.37
KRT28-201ENST00000306658 ADGRL3Q9HAR2 1447 aa23.61■■□□□ 1.37
KRT28-201ENST00000306658 EDC4Q6P2E9 1401 aaKnown RBP23.6■■□□□ 1.37
KRT28-201ENST00000306658 C14orf37Q86TY3 774 aa23.6■■□□□ 1.37
KRT28-201ENST00000306658 ITSN1Q15811 1721 aa23.59■■□□□ 1.37
KRT28-201ENST00000306658 NALCNQ8IZF0 1738 aa23.59■■□□□ 1.37
KRT28-201ENST00000306658 FYB1O15117 783 aa23.59■■□□□ 1.37
KRT28-201ENST00000306658 STRCQ7RTU9 1775 aa23.59■■□□□ 1.37
KRT28-201ENST00000306658 FMN2Q9NZ56 1722 aa23.58■■□□□ 1.37
KRT28-201ENST00000306658 RBM33Q96EV2 1170 aaKnown RBP23.57■■□□□ 1.36
KRT28-201ENST00000306658 ACEP12821 1306 aa23.57■■□□□ 1.36
KRT28-201ENST00000306658 AKAP12Q02952 1782 aa23.57■■□□□ 1.36
KRT28-201ENST00000306658 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.56■■□□□ 1.36
KRT28-201ENST00000306658 GGNBP2Q9H3C7 697 aa23.56■■□□□ 1.36
KRT28-201ENST00000306658 HNRNPUQ00839 825 aaKnown RBP eCLIP23.55■■□□□ 1.36
KRT28-201ENST00000306658 MON2Q7Z3U7 1717 aa23.55■■□□□ 1.36
KRT28-201ENST00000306658 KIF20BQ96Q89 1820 aa23.54■■□□□ 1.36
KRT28-201ENST00000306658 TNNT2P45379 298 aaPredicted RBP23.54■■□□□ 1.36
KRT28-201ENST00000306658 RGPD8O14715 1765 aaPredicted RBP23.53■■□□□ 1.36
KRT28-201ENST00000306658 ANKRD26Q9UPS8 1709 aa23.53■■□□□ 1.36
KRT28-201ENST00000306658 NCOA3Q9Y6Q9 1424 aa23.52■■□□□ 1.36
KRT28-201ENST00000306658 NGDNQ8NEJ9 315 aaKnown RBP23.52■■□□□ 1.36
KRT28-201ENST00000306658 PMFBP1Q8TBY8 1022 aa23.51■■□□□ 1.35
KRT28-201ENST00000306658 C19orf44Q9H6X5 657 aa23.51■■□□□ 1.35
KRT28-201ENST00000306658 POLR3AO14802 1390 aaPredicted RBP23.51■■□□□ 1.35
KRT28-201ENST00000306658 DMRT2Q9Y5R5 561 aa23.5■■□□□ 1.35
KRT28-201ENST00000306658 USP6P35125 1406 aa23.5■■□□□ 1.35
KRT28-201ENST00000306658 STRCP1A6NGW2 1772 aa23.49■■□□□ 1.35
KRT28-201ENST00000306658 TMEM94Q12767 1356 aa23.48■■□□□ 1.35
KRT28-201ENST00000306658 TTC21BQ7Z4L5 1316 aa23.48■■□□□ 1.35
KRT28-201ENST00000306658 WDR43Q15061 677 aaKnown RBP eCLIP23.47■■□□□ 1.35
KRT28-201ENST00000306658 INSRP06213 1382 aa23.46■■□□□ 1.35
KRT28-201ENST00000306658 MTHFSP49914 203 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms