RNA–Protein interactions for RNA: ENST00000306658.7

KRT28-201, Transcript of keratin 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KRT28, Length 1,685 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28-201ENST00000306658 NISCHQ9Y2I1 1504 aa40■■■■□ 3.99
KRT28-201ENST00000306658 CCDC180Q9P1Z9 1646 aa34.97■■■■□ 3.19
KRT28-201ENST00000306658 ZCCHC6Q5VYS8 1495 aaKnown RBP33.56■■■□□ 2.96
KRT28-201ENST00000306658 ABCC9O60706 1549 aa33.2■■■□□ 2.9
KRT28-201ENST00000306658 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
KRT28-201ENST00000306658 DCAF1Q9Y4B6 1507 aa33.11■■■□□ 2.89
KRT28-201ENST00000306658 MYO15BQ96JP2 1530 aa32.81■■■□□ 2.84
KRT28-201ENST00000306658 NACADO15069 1562 aa32.64■■■□□ 2.82
KRT28-201ENST00000306658 SHROOM4Q9ULL8 1493 aa32.46■■■□□ 2.79
KRT28-201ENST00000306658 RB1CC1Q8TDY2 1594 aa32.4■■■□□ 2.78
KRT28-201ENST00000306658 SCRIBQ14160 1630 aa32.09■■■□□ 2.73
KRT28-201ENST00000306658 UNC13AQ9UPW8 1703 aa31.66■■■□□ 2.66
KRT28-201ENST00000306658 BICRAQ9NZM4 1560 aa31.35■■■□□ 2.61
KRT28-201ENST00000306658 PABPN1Q86U42 306 aaKnown RBP eCLIP31.28■■■□□ 2.6
KRT28-201ENST00000306658 SUPT5HO00267 1087 aaKnown RBP31.21■■■□□ 2.59
KRT28-201ENST00000306658 CECR2Q9BXF3 1484 aa31.06■■■□□ 2.56
KRT28-201ENST00000306658 RSF1Q96T23 1441 aaPredicted RBP30.96■■■□□ 2.55
KRT28-201ENST00000306658 BAZ1AQ9NRL2 1556 aaPredicted RBP30.93■■■□□ 2.54
KRT28-201ENST00000306658 MROH2BQ7Z745 1585 aa30.87■■■□□ 2.53
KRT28-201ENST00000306658 SMARCA4P51532 1647 aa30.78■■■□□ 2.52
KRT28-201ENST00000306658 WIZO95785 1651 aa30.6■■■□□ 2.49
KRT28-201ENST00000306658 EIF4G1Q04637 1599 aaKnown RBP30.45■■■□□ 2.47
KRT28-201ENST00000306658 PEG3Q9GZU2 1588 aa30.43■■■□□ 2.46
KRT28-201ENST00000306658 SMARCA2P51531 1590 aa30.34■■■□□ 2.45
KRT28-201ENST00000306658 ATAD2BQ9ULI0 1458 aa30.33■■■□□ 2.45
KRT28-201ENST00000306658 TOP2AP11388 1531 aaKnown RBP30.31■■■□□ 2.44
KRT28-201ENST00000306658 BAZ1BQ9UIG0 1483 aaKnown RBP30.16■■■□□ 2.42
KRT28-201ENST00000306658 NCAPD3P42695 1498 aa30.12■■■□□ 2.41
KRT28-201ENST00000306658 HMGXB3Q12766 1538 aa30.05■■■□□ 2.4
KRT28-201ENST00000306658 CC2D2AQ9P2K1 1620 aa30.04■■■□□ 2.4
KRT28-201ENST00000306658 CCDC88BA6NC98 1476 aa30■■■□□ 2.39
KRT28-201ENST00000306658 CHIC1Q5VXU3 224 aa29.78■■■□□ 2.36
KRT28-201ENST00000306658 DNAJC5BQ9UF47 199 aa29.4■■■□□ 2.3
KRT28-201ENST00000306658 TRIM41Q8WV44 630 aa29.4■■■□□ 2.3
KRT28-201ENST00000306658 CFTRP13569 1480 aa29.39■■■□□ 2.3
KRT28-201ENST00000306658 CADPSQ9ULU8 1353 aa29.35■■■□□ 2.29
KRT28-201ENST00000306658 ABCC8Q09428 1581 aa29.28■■■□□ 2.28
KRT28-201ENST00000306658 PRDM2Q13029 1718 aa29.22■■■□□ 2.27
KRT28-201ENST00000306658 WRNQ14191 1432 aaPredicted RBP eCLIP29.18■■■□□ 2.26
KRT28-201ENST00000306658 LAMC3Q9Y6N6 1575 aa29.13■■■□□ 2.25
KRT28-201ENST00000306658 NESP48681 1621 aa29.07■■■□□ 2.24
KRT28-201ENST00000306658 SYNJ1O43426 1573 aa29■■■□□ 2.23
KRT28-201ENST00000306658 FANCD2Q9BXW9 1451 aa29■■■□□ 2.23
KRT28-201ENST00000306658 TOP2BQ02880 1626 aa28.94■■■□□ 2.22
KRT28-201ENST00000306658 PDS5BQ9NTI5 1447 aa28.94■■■□□ 2.22
KRT28-201ENST00000306658 BIVM-ERCC5R4GMW8 1640 aa28.9■■■□□ 2.22
KRT28-201ENST00000306658 CUX1P39880 1505 aa28.87■■■□□ 2.21
KRT28-201ENST00000306658 CEP164Q9UPV0 1460 aa28.84■■■□□ 2.21
KRT28-201ENST00000306658 FAM9AQ8IZU1 332 aaPredicted RBP28.8■■■□□ 2.2
KRT28-201ENST00000306658 KIF21AQ7Z4S6 1674 aa28.72■■■□□ 2.19
KRT28-201ENST00000306658 SOGA1O94964 1423 aa28.71■■■□□ 2.19
KRT28-201ENST00000306658 EEA1Q15075 1411 aa28.71■■■□□ 2.19
KRT28-201ENST00000306658 DNMBPQ6XZF7 1577 aa28.7■■■□□ 2.19
KRT28-201ENST00000306658 TOPBP1Q92547 1522 aa28.66■■■□□ 2.18
KRT28-201ENST00000306658 URB2Q14146 1524 aaKnown RBP28.61■■■□□ 2.17
KRT28-201ENST00000306658 FGD5Q6ZNL6 1462 aa28.61■■■□□ 2.17
KRT28-201ENST00000306658 LOC105371045A0A1W2PR82 267 aa28.61■■■□□ 2.17
KRT28-201ENST00000306658 RUSC2Q8N2Y8 1516 aa28.59■■■□□ 2.17
KRT28-201ENST00000306658 CSRNP3Q8WYN3 585 aa28.56■■■□□ 2.16
KRT28-201ENST00000306658 MRC2Q9UBG0 1479 aa28.54■■■□□ 2.16
KRT28-201ENST00000306658 ERCC6Q03468 1493 aa28.53■■■□□ 2.16
KRT28-201ENST00000306658 POLA1P09884 1462 aaPredicted RBP28.5■■■□□ 2.15
KRT28-201ENST00000306658 KIF27Q86VH2 1401 aa28.48■■■□□ 2.15
KRT28-201ENST00000306658 CUX2O14529 1486 aa28.41■■■□□ 2.14
KRT28-201ENST00000306658 RAD54L2Q9Y4B4 1467 aa28.39■■■□□ 2.13
KRT28-201ENST00000306658 WDR62O43379 1518 aa28.37■■■□□ 2.13
KRT28-201ENST00000306658 ABCA10Q8WWZ4 1543 aa28.37■■■□□ 2.13
KRT28-201ENST00000306658 EHMT2Q96KQ7 1210 aa28.36■■■□□ 2.13
KRT28-201ENST00000306658 THOC2Q8NI27 1593 aaKnown RBP28.3■■■□□ 2.12
KRT28-201ENST00000306658 KIF21BO75037 1637 aa28.29■■■□□ 2.12
KRT28-201ENST00000306658 GOLGA3Q08378 1498 aa28.27■■■□□ 2.12
KRT28-201ENST00000306658 WDR97A6NE52 1622 aa28.24■■■□□ 2.11
KRT28-201ENST00000306658 TARBP1Q13395 1621 aaKnown RBP28.23■■■□□ 2.11
KRT28-201ENST00000306658 IGF1RP08069 1367 aa28.22■■■□□ 2.11
KRT28-201ENST00000306658 PRXQ9BXM0 1461 aa28.2■■■□□ 2.11
KRT28-201ENST00000306658 UBTFP17480 764 aaKnown RBP28.19■■■□□ 2.1
KRT28-201ENST00000306658 IFT140Q96RY7 1462 aa28.18■■■□□ 2.1
KRT28-201ENST00000306658 TDRD9Q8NDG6 1382 aaKnown RBP28.16■■■□□ 2.1
KRT28-201ENST00000306658 TNIKQ9UKE5 1360 aa28.16■■■□□ 2.1
KRT28-201ENST00000306658 ERICH3Q5RHP9 1530 aa28.15■■■□□ 2.1
KRT28-201ENST00000306658 RAPGEF2Q9Y4G8 1499 aa28.14■■■□□ 2.09
KRT28-201ENST00000306658 ABCA5Q8WWZ7 1642 aa28.12■■■□□ 2.09
KRT28-201ENST00000306658 GAPVD1Q14C86 1478 aa28.12■■■□□ 2.09
KRT28-201ENST00000306658 CARMIL1Q5VZK9 1371 aa28.09■■■□□ 2.09
KRT28-201ENST00000306658 CUL7Q14999 1698 aa28.01■■■□□ 2.08
KRT28-201ENST00000306658 AQRO60306 1485 aaKnown RBP eCLIP28■■■□□ 2.07
KRT28-201ENST00000306658 ZNF608Q9ULD9 1512 aaPredicted RBP27.96■■■□□ 2.07
KRT28-201ENST00000306658 CEP162Q5TB80 1403 aa27.96■■■□□ 2.07
KRT28-201ENST00000306658 GRIN2BQ13224 1484 aa27.93■■■□□ 2.06
KRT28-201ENST00000306658 PBRM1Q86U86 1689 aa27.93■■■□□ 2.06
KRT28-201ENST00000306658 EIF4G3O43432 1585 aaKnown RBP27.88■■■□□ 2.05
KRT28-201ENST00000306658 FHAD1B1AJZ9 1412 aa27.82■■■□□ 2.04
KRT28-201ENST00000306658 CLIP1P30622 1438 aa27.81■■■□□ 2.04
KRT28-201ENST00000306658 ADAMTS12P58397 1594 aa27.77■■■□□ 2.04
KRT28-201ENST00000306658 SNAPC4Q5SXM2 1469 aa27.73■■■□□ 2.03
KRT28-201ENST00000306658 MAGI1Q96QZ7 1491 aaPredicted RBP27.72■■■□□ 2.03
KRT28-201ENST00000306658 RANGAP1P46060 587 aaPredicted RBP27.72■■■□□ 2.03
KRT28-201ENST00000306658 CTTNBP2Q8WZ74 1663 aa27.66■■■□□ 2.02
KRT28-201ENST00000306658 SYNJ2O15056 1496 aa27.61■■■□□ 2.01
KRT28-201ENST00000306658 CHMP7Q8WUX9 453 aaPredicted RBP27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms