RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 CDC42BPGQ6DT37 1551 aa20.74■□□□□ 0.91
TPM1-202ENST00000288398 NGLY1Q96IV0 654 aa20.74■□□□□ 0.91
TPM1-202ENST00000288398 NPHP3Q7Z494 1330 aa20.74■□□□□ 0.91
TPM1-202ENST00000288398 SOS2Q07890 1332 aaPredicted RBP20.73■□□□□ 0.91
TPM1-202ENST00000288398 PIK3C2GO75747 1445 aa20.71■□□□□ 0.91
TPM1-202ENST00000288398 TMEM132EQ6IEE7 984 aa20.71■□□□□ 0.91
TPM1-202ENST00000288398 WAPLQ7Z5K2 1190 aa20.71■□□□□ 0.91
TPM1-202ENST00000288398 TECPR2O15040 1411 aa20.7■□□□□ 0.9
TPM1-202ENST00000288398 IFT172Q9UG01 1749 aa20.7■□□□□ 0.9
TPM1-202ENST00000288398 QTRT2Q9H974 415 aaKnown RBP20.7■□□□□ 0.9
TPM1-202ENST00000288398 LAMC1P11047 1609 aa20.7■□□□□ 0.9
TPM1-202ENST00000288398 ABCC11Q96J66 1382 aa20.7■□□□□ 0.9
TPM1-202ENST00000288398 CDK12Q9NYV4 1490 aaPredicted RBP20.69■□□□□ 0.9
TPM1-202ENST00000288398 NUTM2FA1L443 756 aa20.69■□□□□ 0.9
TPM1-202ENST00000288398 RBM6P78332 1123 aaKnown RBP20.68■□□□□ 0.9
TPM1-202ENST00000288398 YTHDC2Q9H6S0 1430 aaKnown RBP20.68■□□□□ 0.9
TPM1-202ENST00000288398 FOXO3O43524 673 aa20.67■□□□□ 0.9
TPM1-202ENST00000288398 DHX57Q6P158 1386 aaKnown RBP20.67■□□□□ 0.9
TPM1-202ENST00000288398 RAB3GAP2Q9H2M9 1393 aa20.67■□□□□ 0.9
TPM1-202ENST00000288398 KNDC1Q76NI1 1749 aa20.66■□□□□ 0.9
TPM1-202ENST00000288398 USP21Q9UK80 565 aa20.65■□□□□ 0.9
TPM1-202ENST00000288398 XPCQ01831 940 aaPredicted RBP20.64■□□□□ 0.89
TPM1-202ENST00000288398 UPF1Q92900 1129 aaKnown RBP eCLIP20.64■□□□□ 0.89
TPM1-202ENST00000288398 C14orf93Q9H972 538 aaKnown RBP20.64■□□□□ 0.89
TPM1-202ENST00000288398 MYOM2P54296 1465 aa20.63■□□□□ 0.89
TPM1-202ENST00000288398 PLEKHH1Q9ULM0 1364 aa20.63■□□□□ 0.89
TPM1-202ENST00000288398 CFAP70Q5T0N1 1121 aa20.62■□□□□ 0.89
TPM1-202ENST00000288398 SIRT1Q96EB6 747 aa20.62■□□□□ 0.89
TPM1-202ENST00000288398 TRPC5Q9UL62 973 aaPredicted RBP20.62■□□□□ 0.89
TPM1-202ENST00000288398 POGKQ9P215 609 aa20.61■□□□□ 0.89
TPM1-202ENST00000288398 PXDNQ92626 1479 aa20.61■□□□□ 0.89
TPM1-202ENST00000288398 COL22A1Q8NFW1 1626 aaPredicted RBP20.6■□□□□ 0.89
TPM1-202ENST00000288398 RGS12O14924 1447 aa20.6■□□□□ 0.89
TPM1-202ENST00000288398 HAP1P54257 671 aaPredicted RBP20.59■□□□□ 0.89
TPM1-202ENST00000288398 SAFB2Q14151 953 aaKnown RBP eCLIP20.59■□□□□ 0.89
TPM1-202ENST00000288398 KIF1AQ12756 1690 aa20.58■□□□□ 0.89
TPM1-202ENST00000288398 NRXN1Q9ULB1 1477 aa20.58■□□□□ 0.89
TPM1-202ENST00000288398 PRAM1Q96QH2 718 aa20.58■□□□□ 0.89
TPM1-202ENST00000288398 FMN2Q9NZ56 1722 aa20.58■□□□□ 0.88
TPM1-202ENST00000288398 PSME1Q06323 249 aa20.57■□□□□ 0.88
TPM1-202ENST00000288398 FNBP4Q8N3X1 1017 aaPredicted RBP20.57■□□□□ 0.88
TPM1-202ENST00000288398 KRT28Q7Z3Y7 464 aa20.56■□□□□ 0.88
TPM1-202ENST00000288398 PHF8Q9UPP1 1060 aa20.55■□□□□ 0.88
TPM1-202ENST00000288398 KDM2AQ9Y2K7 1162 aa20.55■□□□□ 0.88
TPM1-202ENST00000288398 DCAF11Q8TEB1 546 aa20.54■□□□□ 0.88
TPM1-202ENST00000288398 SPATA31A3Q5VYP0 1347 aa20.53■□□□□ 0.88
TPM1-202ENST00000288398 ATAD2Q6PL18 1390 aa20.53■□□□□ 0.88
TPM1-202ENST00000288398 LMOD2Q6P5Q4 547 aa20.52■□□□□ 0.88
TPM1-202ENST00000288398 STAC3Q96MF2 364 aa20.51■□□□□ 0.87
TPM1-202ENST00000288398 TRAK1Q9UPV9 953 aa20.51■□□□□ 0.87
TPM1-202ENST00000288398 DLC1Q96QB1 1528 aa20.51■□□□□ 0.87
TPM1-202ENST00000288398 ATRNO75882 1429 aa20.51■□□□□ 0.87
TPM1-202ENST00000288398 EIF3AQ14152 1382 aaKnown RBP20.5■□□□□ 0.87
TPM1-202ENST00000288398 PLEKHG5O94827 1062 aa20.5■□□□□ 0.87
TPM1-202ENST00000288398 HRCP23327 699 aa20.5■□□□□ 0.87
TPM1-202ENST00000288398 TNS3Q68CZ2 1445 aa20.49■□□□□ 0.87
TPM1-202ENST00000288398 MARF1Q9Y4F3 1742 aaKnown RBP20.48■□□□□ 0.87
TPM1-202ENST00000288398 ANKARQ7Z5J8 1434 aa20.48■□□□□ 0.87
TPM1-202ENST00000288398 ARHGEF10O15013 1369 aa20.46■□□□□ 0.87
TPM1-202ENST00000288398 UNC5CLQ8IV45 518 aa20.46■□□□□ 0.87
TPM1-202ENST00000288398 PMFBP1Q8TBY8 1022 aa20.46■□□□□ 0.87
TPM1-202ENST00000288398 GJD4Q96KN9 370 aaPredicted RBP20.46■□□□□ 0.87
TPM1-202ENST00000288398 HIRIP3Q9BW71 556 aaPredicted RBP20.46■□□□□ 0.87
TPM1-202ENST00000288398 MINK1Q8N4C8 1332 aaPredicted RBP20.46■□□□□ 0.87
TPM1-202ENST00000288398 SBNO1A3KN83 1393 aa20.46■□□□□ 0.87
TPM1-202ENST00000288398 BCL9LQ86UU0 1499 aa20.45■□□□□ 0.86
TPM1-202ENST00000288398 GPRASP1Q5JY77 1395 aa20.45■□□□□ 0.86
TPM1-202ENST00000288398 ADGRB1O14514 1584 aa20.44■□□□□ 0.86
TPM1-202ENST00000288398 RGPD8O14715 1765 aaPredicted RBP20.44■□□□□ 0.86
TPM1-202ENST00000288398 ADGRB2O60241 1585 aa20.43■□□□□ 0.86
TPM1-202ENST00000288398 USP32Q8NFA0 1604 aa20.42■□□□□ 0.86
TPM1-202ENST00000288398 CABLES1Q8TDN4 633 aa20.42■□□□□ 0.86
TPM1-202ENST00000288398 CCDC9Q9Y3X0 531 aaKnown RBP20.42■□□□□ 0.86
TPM1-202ENST00000288398 WASLO00401 505 aaPredicted RBP20.4■□□□□ 0.86
TPM1-202ENST00000288398 NGDNQ8NEJ9 315 aaKnown RBP20.4■□□□□ 0.86
TPM1-202ENST00000288398 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.39■□□□□ 0.86
TPM1-202ENST00000288398 SLIT2O94813 1529 aa20.39■□□□□ 0.85
TPM1-202ENST00000288398 TULP4Q9NRJ4 1543 aa20.38■□□□□ 0.85
TPM1-202ENST00000288398 CCDC125Q86Z20 511 aa20.38■□□□□ 0.85
TPM1-202ENST00000288398 RALGAPBQ86X10 1494 aa20.37■□□□□ 0.85
TPM1-202ENST00000288398 PAK3O75914 559 aaPredicted RBP20.37■□□□□ 0.85
TPM1-202ENST00000288398 A0A0G2JS52 829 aa20.35■□□□□ 0.85
TPM1-202ENST00000288398 MYT1Q01538 1121 aa20.35■□□□□ 0.85
TPM1-202ENST00000288398 VPS72Q15906 364 aa20.35■□□□□ 0.85
TPM1-202ENST00000288398 PRR36Q9H6K5 1346 aa20.33■□□□□ 0.85
TPM1-202ENST00000288398 SF3B2Q13435 895 aaKnown RBP20.32■□□□□ 0.84
TPM1-202ENST00000288398 ZRANB1Q9UGI0 708 aa20.32■□□□□ 0.84
TPM1-202ENST00000288398 PLCH1Q4KWH8 1693 aa20.32■□□□□ 0.84
TPM1-202ENST00000288398 NWD2Q9ULI1 1742 aa20.31■□□□□ 0.84
TPM1-202ENST00000288398 GLI3P10071 1580 aa20.31■□□□□ 0.84
TPM1-202ENST00000288398 SEPT12Q8IYM1 358 aa20.31■□□□□ 0.84
TPM1-202ENST00000288398 NUDT16Q96DE0 195 aaKnown RBP20.31■□□□□ 0.84
TPM1-202ENST00000288398 ABCA3Q99758 1704 aa20.3■□□□□ 0.84
TPM1-202ENST00000288398 FAM83GA6ND36 823 aa20.3■□□□□ 0.84
TPM1-202ENST00000288398 ARHGEF28Q8N1W1 1705 aaKnown RBP20.3■□□□□ 0.84
TPM1-202ENST00000288398 BTG4Q9NY30 223 aa20.29■□□□□ 0.84
TPM1-202ENST00000288398 ITSN1Q15811 1721 aa20.29■□□□□ 0.84
TPM1-202ENST00000288398 TRPM3Q9HCF6 1732 aaPredicted RBP20.28■□□□□ 0.84
TPM1-202ENST00000288398 CDK19Q9BWU1 502 aa20.28■□□□□ 0.84
TPM1-202ENST00000288398 PRDM11Q9NQV5 511 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms