RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 LMTK3Q96Q04 1460 aa28.53■■■□□ 2.16
YBX3-202ENST00000279550 KTN1Q86UP2 1357 aaKnown RBP28.53■■■□□ 2.16
YBX3-202ENST00000279550 SAFB2Q14151 953 aaKnown RBP eCLIP28.53■■■□□ 2.16
YBX3-202ENST00000279550 CPS1P31327 1500 aa28.53■■■□□ 2.16
YBX3-202ENST00000279550 RALBP1Q15311 655 aa28.52■■■□□ 2.16
YBX3-202ENST00000279550 PTPRUQ92729 1446 aa28.52■■■□□ 2.16
YBX3-202ENST00000279550 NCKAP5LQ9HCH0 1330 aa28.52■■■□□ 2.16
YBX3-202ENST00000279550 MYOM1P52179 1685 aa28.52■■■□□ 2.16
YBX3-202ENST00000279550 PARD3Q8TEW0 1356 aa28.52■■■□□ 2.16
YBX3-202ENST00000279550 FAM135BQ49AJ0 1406 aa28.51■■■□□ 2.15
YBX3-202ENST00000279550 SIRT1Q96EB6 747 aa28.5■■■□□ 2.15
YBX3-202ENST00000279550 MYBBP1AQ9BQG0 1328 aaKnown RBP28.5■■■□□ 2.15
YBX3-202ENST00000279550 PIK3R4Q99570 1358 aa28.5■■■□□ 2.15
YBX3-202ENST00000279550 WAPLQ7Z5K2 1190 aa28.49■■■□□ 2.15
YBX3-202ENST00000279550 PLEKHH1Q9ULM0 1364 aa28.48■■■□□ 2.15
YBX3-202ENST00000279550 HSPA2P54652 639 aa28.48■■■□□ 2.15
YBX3-202ENST00000279550 AMOTL2Q9Y2J4 779 aa28.47■■■□□ 2.15
YBX3-202ENST00000279550 ROBO2Q9HCK4 1378 aa28.47■■■□□ 2.15
YBX3-202ENST00000279550 TULP4Q9NRJ4 1543 aa28.46■■■□□ 2.15
YBX3-202ENST00000279550 EVC2Q86UK5 1308 aa28.46■■■□□ 2.15
YBX3-202ENST00000279550 BRD4O60885 1362 aaPredicted RBP28.44■■■□□ 2.14
YBX3-202ENST00000279550 MINK1Q8N4C8 1332 aaPredicted RBP28.44■■■□□ 2.14
YBX3-202ENST00000279550 PTCH1Q13635 1447 aa28.43■■■□□ 2.14
YBX3-202ENST00000279550 XRN1Q8IZH2 1706 aaKnown RBP28.43■■■□□ 2.14
YBX3-202ENST00000279550 CC2D1BQ5T0F9 858 aaKnown RBP28.42■■■□□ 2.14
YBX3-202ENST00000279550 TMC1Q8TDI8 760 aa28.42■■■□□ 2.14
YBX3-202ENST00000279550 PNISRQ8TF01 805 aaKnown RBP28.42■■■□□ 2.14
YBX3-202ENST00000279550 PUS7Q96PZ0 661 aaKnown RBP28.39■■■□□ 2.14
YBX3-202ENST00000279550 SUPT16HQ9Y5B9 1047 aaKnown RBP28.39■■■□□ 2.14
YBX3-202ENST00000279550 KCNA6P17658 529 aa28.38■■■□□ 2.13
YBX3-202ENST00000279550 CHD2O14647 1828 aaKnown RBP28.37■■■□□ 2.13
YBX3-202ENST00000279550 ZBED9Q6R2W3 1325 aa28.36■■■□□ 2.13
YBX3-202ENST00000279550 NLRP13Q86W25 1043 aa28.35■■■□□ 2.13
YBX3-202ENST00000279550 SRPK2P78362 688 aaKnown RBP28.34■■■□□ 2.13
YBX3-202ENST00000279550 CABP2Q9NPB3 220 aa28.34■■■□□ 2.13
YBX3-202ENST00000279550 CDK19Q9BWU1 502 aa28.32■■■□□ 2.12
YBX3-202ENST00000279550 AMER1Q5JTC6 1135 aaPredicted RBP28.32■■■□□ 2.12
YBX3-202ENST00000279550 KNSTRNQ9Y448 316 aa28.32■■■□□ 2.12
YBX3-202ENST00000279550 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.31■■■□□ 2.12
YBX3-202ENST00000279550 STRCQ7RTU9 1775 aa28.31■■■□□ 2.12
YBX3-202ENST00000279550 ATAD2Q6PL18 1390 aa28.3■■■□□ 2.12
YBX3-202ENST00000279550 ADGRB2O60241 1585 aa28.3■■■□□ 2.12
YBX3-202ENST00000279550 WASLO00401 505 aaPredicted RBP28.29■■■□□ 2.12
YBX3-202ENST00000279550 NWD1Q149M9 1564 aa28.28■■■□□ 2.12
YBX3-202ENST00000279550 SLC12A5Q9H2X9 1139 aa28.26■■■□□ 2.11
YBX3-202ENST00000279550 NINLQ9Y2I6 1382 aa28.24■■■□□ 2.11
YBX3-202ENST00000279550 CARD14Q9BXL6 1004 aa28.23■■■□□ 2.11
YBX3-202ENST00000279550 NPC1L1Q9UHC9 1359 aa28.23■■■□□ 2.11
YBX3-202ENST00000279550 FKBP8Q14318 412 aa28.23■■■□□ 2.11
YBX3-202ENST00000279550 SENP3-EIF4A1A0A087X0R7 540 aa28.21■■■□□ 2.11
YBX3-202ENST00000279550 NKTRP30414 1462 aaKnown RBP28.2■■■□□ 2.1
YBX3-202ENST00000279550 PPP2R1AP30153 589 aa28.19■■■□□ 2.1
YBX3-202ENST00000279550 ANKRD36BQ8N2N9 1353 aa28.18■■■□□ 2.1
YBX3-202ENST00000279550 NUDT16Q96DE0 195 aaKnown RBP28.16■■■□□ 2.1
YBX3-202ENST00000279550 ATP7BP35670 1465 aa28.16■■■□□ 2.1
YBX3-202ENST00000279550 NEFLP07196 543 aa28.15■■■□□ 2.1
YBX3-202ENST00000279550 NALCNQ8IZF0 1738 aa28.15■■■□□ 2.1
YBX3-202ENST00000279550 RBM33Q96EV2 1170 aaKnown RBP28.15■■■□□ 2.1
YBX3-202ENST00000279550 CABP1Q9NZU7 370 aa28.15■■■□□ 2.1
YBX3-202ENST00000279550 CCDC61Q9Y6R9 512 aa28.14■■■□□ 2.1
YBX3-202ENST00000279550 PRR36Q9H6K5 1346 aa28.14■■■□□ 2.09
YBX3-202ENST00000279550 ADGRL3Q9HAR2 1447 aa28.13■■■□□ 2.09
YBX3-202ENST00000279550 PROSER2Q86WR7 435 aaPredicted RBP28.12■■■□□ 2.09
YBX3-202ENST00000279550 STRCP1A6NGW2 1772 aa28.12■■■□□ 2.09
YBX3-202ENST00000279550 A0A1W2PP64 1363 aa28.12■■■□□ 2.09
YBX3-202ENST00000279550 PPIP5K1Q6PFW1 1433 aa28.12■■■□□ 2.09
YBX3-202ENST00000279550 CD163L1Q9NR16 1453 aa28.12■■■□□ 2.09
YBX3-202ENST00000279550 TERF2IPQ9NYB0 399 aa28.11■■■□□ 2.09
YBX3-202ENST00000279550 NSD3Q9BZ95 1437 aa28.11■■■□□ 2.09
YBX3-202ENST00000279550 CDC42BPGQ6DT37 1551 aa28.1■■■□□ 2.09
YBX3-202ENST00000279550 SMG6Q86US8 1419 aaKnown RBP28.1■■■□□ 2.09
YBX3-202ENST00000279550 BLMP54132 1417 aaPredicted RBP28.09■■■□□ 2.09
YBX3-202ENST00000279550 NUTM2FA1L443 756 aa28.09■■■□□ 2.09
YBX3-202ENST00000279550 DMRT2Q9Y5R5 561 aa28.09■■■□□ 2.09
YBX3-202ENST00000279550 INSRP06213 1382 aa28.07■■■□□ 2.08
YBX3-202ENST00000279550 USP32Q8NFA0 1604 aa28.07■■■□□ 2.08
YBX3-202ENST00000279550 HDGFL2Q7Z4V5 671 aaPredicted RBP28.06■■■□□ 2.08
YBX3-202ENST00000279550 C14orf37Q86TY3 774 aa28.06■■■□□ 2.08
YBX3-202ENST00000279550 TOPAZ1Q8N9V7 1692 aa28.06■■■□□ 2.08
YBX3-202ENST00000279550 FMN2Q9NZ56 1722 aa28.06■■■□□ 2.08
YBX3-202ENST00000279550 ANKARQ7Z5J8 1434 aa28.05■■■□□ 2.08
YBX3-202ENST00000279550 TMEM94Q12767 1356 aa28.04■■■□□ 2.08
YBX3-202ENST00000279550 CPSF1Q10570 1443 aaKnown RBP28.03■■■□□ 2.08
YBX3-202ENST00000279550 ZNF335Q9H4Z2 1342 aaPredicted RBP28.03■■■□□ 2.08
YBX3-202ENST00000279550 NCOA3Q9Y6Q9 1424 aa28.03■■■□□ 2.08
YBX3-202ENST00000279550 NUDCQ9Y266 331 aa28.02■■■□□ 2.08
YBX3-202ENST00000279550 CGNL1Q0VF96 1302 aa28.01■■■□□ 2.07
YBX3-202ENST00000279550 PLEKHG3A1L390 1219 aa28.01■■■□□ 2.07
YBX3-202ENST00000279550 ITSN1Q15811 1721 aa28■■■□□ 2.07
YBX3-202ENST00000279550 IRX6P78412 446 aaPredicted RBP28■■■□□ 2.07
YBX3-202ENST00000279550 C19orf44Q9H6X5 657 aa27.99■■■□□ 2.07
YBX3-202ENST00000279550 ADAMTS8Q9UP79 889 aa27.99■■■□□ 2.07
YBX3-202ENST00000279550 RGPD8O14715 1765 aaPredicted RBP27.97■■■□□ 2.07
YBX3-202ENST00000279550 ZNF692Q9BU19 519 aaPredicted RBP27.96■■■□□ 2.07
YBX3-202ENST00000279550 SALL2Q9Y467 1007 aaPredicted RBP27.96■■■□□ 2.07
YBX3-202ENST00000279550 ACEP12821 1306 aa27.96■■■□□ 2.07
YBX3-202ENST00000279550 EDC4Q6P2E9 1401 aaKnown RBP27.95■■■□□ 2.06
YBX3-202ENST00000279550 LRRC7Q96NW7 1537 aa27.94■■■□□ 2.06
YBX3-202ENST00000279550 NSD2O96028 1365 aa27.94■■■□□ 2.06
YBX3-202ENST00000279550 AKAP12Q02952 1782 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms